CN182054

Overview
NameCN182054
Unique NameCN182054
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length340
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN182054_ssr213 microsatellite CN182054_ssr213:213..224. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN182054 vs. ExPASy Swiss-Prot
Match: Y3377_ARATH (Uncharacterized protein At3g03773 OS=Arabidopsis thaliana GN=At3g03773 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.679e-18
Identity = 42/67 (62.69%), Postives = 47/67 (70.15%), Query Frame = -2 
Query:  136 WWKRLLKSEVKPAPYIKVDWNKWCDEDDEGXXXXXXXXXXXAEHAGQNDESSDDEGMLYLPDLEKLR 336
            WW RLLKSE KPAPYIKVDWNKWCDED+E            +    Q+ ESSDD+G+LYLPDLEK R
Sbjct:   84 WWTRLLKSEEKPAPYIKVDWNKWCDEDEE--VNSETASDDESAFVNQDSESSDDDGLLYLPDLEKAR 148
The following BLAST results are available for this feature:
BLAST of CN182054 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y3377_ARATH3.679e-1862.69Uncharacterized protein At3g03773 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001O05_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001O05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182054 ID=CN182054; Name=CN182054; organism=Citrus sinensis; type=EST; length=340bp
AGATCTGATATATACATCTTTAAACCTCCATTATGTGGAGTGAAATTTCC
ATCGTGTACGGTGTACCTAACAATGAGAAAGCATGGTAGCATAAATTCAT
CTTCCATGTTATTCTACTTATTAGTACTGGTTCCCTCTTAACTTCTCCAA
ATCGGGGAGGTAGAGCATTCCTTCATCATCACTGCTTTCATCATTTTGGC
CAGCATGCTCAGCATCATCATCATTGGAAGCCAAATCAGAATTTGATCCC
TCATCATCTTCATCGCACCATTTGTTCCAATCAACCTTAATGTAAGGAGC
TGGTTTCACTTCTGACTTGAGTAGCCTTTTCCACCAACCT
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