CN188860

Overview
NameCN188860
Unique NameCN188860
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188860 vs. ExPASy Swiss-Prot
Match: FBL10_ARATH (F-box/LRR-repeat protein 10 OS=Arabidopsis thaliana GN=FBL10 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 4.389e-62
Identity = 124/209 (59.33%), Postives = 157/209 (75.12%), Query Frame = -2
Query:  187 LRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDILDALARSRPFLNVACRGEEL---GVDQWDNSDGMYMHDYDEVDELEQWLM------EGEDESDNDEEMANAE 786
            L+  V+ SLV LS+RGC+ LTDK +S LFDG+SKL L+ELDLSNLP+L+D  I  LA    PI++L++R+C LIGD SV+ALAS  V +D   GSS+ LLDLY+CGGITQL+F+WLKKP+FPRL+WLG+TGSVNRDI+DALAR RP L V+CRGEEL   G D WD++D ++ H   + DELEQW++      E ED  D  EE A+ E
Sbjct:  448 LKEGVLDSLVSLSVRGCRNLTDKFMSTLFDGSSKLALRELDLSNLPNLTDAAIFALAKSGAPITKLQLRECRLIGDASVMALASTRVYEDECPGSSLCLLDLYDCGGITQLSFKWLKKPFFPRLKWLGITGSVNRDIVDALARRRPHLQVSCRGEELGNDGEDDWDSAD-IHQHIEAQEDELEQWILGDEGDVEMEDAEDESEEDASEE 655          
BLAST of CN188860 vs. ExPASy Swiss-Prot
Match: ATB_ARATH (F-box protein At-B OS=Arabidopsis thaliana GN=ATB PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.666e-18
Identity = 58/164 (35.37%), Postives = 90/164 (54.88%), Query Frame = -2
Query:  298 LVKLSLRGCKRLTDKCISALF--DGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSS--IRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGV----TGSVNRDILDALARSRPFLNVACRGEELGV-DQWD 762
            + +LSLRGC+R++D+ IS L   +GT    L  LDL ++P +SD  I T+  C   ++EL +R C  + D+S+ +LA+    + +  G S  +R L+++NC  +T  A RWL KP F  L WLG+           +   +   RP+L +   G ELG  D W+
Sbjct:  440 ITQLSLRGCRRVSDRGISYLLNNEGTISKTLSTLDLGHMPGISDRAIHTITHCCKALTELSIRSCFHVTDSSIESLATW---ERQAEGGSKQLRKLNVHNCVSLTTGALRWLSKPSFAGLHWLGMGQTRFAGRKETVTAMICGQRPWLTLCFDGCELGCSDGWE 600          
The following BLAST results are available for this feature:
BLAST of CN188860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
FBL10_ARATH4.389e-6259.33F-box/LRR-repeat protein 10 OS=Arabidopsis thalian... [more]
ATB_ARATH8.666e-1835.37F-box protein At-B OS=Arabidopsis thaliana GN=ATB ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0006O17_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006O17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188860 ID=CN188860; Name=CN188860; organism=Citrus sinensis; type=EST; length=787bp
CTTTTTTTTTTTTTTTAAAGCGAAAGCAAACTCAAGGCTTTGCGAAATTT
ACCATTAAATTTCATGTAAGAGTTAACAGTATGTAGATATACCCAATCAA
TGAAAACTGATACAAGTTACACGTACATGCATACATACAAGGTGAAACCT
TATCTTAGCAAATTACTCCATTGGTTCTGCATTGATTTCTGCATTGGCCA
TCTCCTCGTCGTTGTCACTCTCGTCCTCTCCTTCCATAAGCCACTGCTCA
AGTTCGTCGACCTCATCATAGTCATGCATGTACATACCATCAGAGTTATC
CCACTGGTCAACACCCAGTTCCTCACCACGGCAAGCCACGTTCAGGAATG
GTCTACTCCTGGCTAAAGCATCTAAGATATCTCTATTTACACTCCCTGTC
ACTCCCAACCATCTCAACCTTGGAAAGTAAGGTTTCTTTAACCACCGGAA
TGCAAGCTGTGTTATGCCACCACAGTTATAAAGATCCAACAACCTTATGC
TACTACCATACCATCTGTCGTCATCAACCAGCATTGAGGCCAGTGCAATA
ACAGAGGTGTCACCTATCAGCGGACATTGTCGCACTCGGAGTTCTGAGAT
TGGCACCCGACATGTTGCCAGTGTCAAAATCCCATTATCGGAGAGGTGTG
GGAGATTTGACAGATCCAATTCTTGAAGCTGCAGTTTAGAAGTGCCATCA
AACAGAGCAGAGATGCATTTGTCTGTGAGTCTCTTGCACCCTCTAAGAGA
CAACTTAACTAATGAAGTTATGACAGTGAGTCTTAAA
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