CN182042

Overview
NameCN182042
Unique NameCN182042
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3585 contig Csv1_Contig3585:454..1189. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182042 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.386e-24
Identity = 69/171 (40.35%), Postives = 94/171 (54.97%), Query Frame = 3
Query:  240 DDDSSVEEPRSRARP-----CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF-SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFI 734
            +++  +EE   R          LYV NLP S   S+L E+F   GTV +VE+  +  T  SRG  ++TMGS+  AK AI   DGS VGGR ++V F  +          A I    + FV +SPHKLYV NLSWA+  + LR+ F      +SA+V++DR    +R FGFI
Sbjct:   94 EEEEEIEEKEERVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFV-DSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFI 263          
BLAST of CN182042 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.074e-19
Identity = 58/168 (34.52%), Postives = 86/168 (51.19%), Query Frame = 3
Query:  231 NEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFI 734
            +EV+ D   EE +      +L+V NLP   D   L  +F+  G V   EV  N +T  SRG G++TM ++  A+ A+   +  DV GR + V      N   R  E    PP+    +E  +++YVGN+ W +    L   F   G VVSARV++DR+   +R FGF+
Sbjct:  118 DEVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTV------NKAARRGERPERPPR---TFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFV 276          
BLAST of CN182042 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.645e-18
Identity = 57/165 (34.55%), Postives = 88/165 (53.33%), Query Frame = 3
Query:  240 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFI 734
            D D  VEE R+ +   +++V NLP S D + L E+F+  G V  VEV  +  TG SRG G++TM S    + A    +G ++ GR +RV        R  +  +     +    ++S +++YVGNL+W V  + L   F   G VV A+V++DR    +R FGF+
Sbjct:   72 DGDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENS--SFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFV 234          
BLAST of CN182042 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.512e-18
Identity = 62/170 (36.47%), Postives = 87/170 (51.18%), Query Frame = 3
Query:  234 EVDDDSSVEEPRSRARPCE---LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFI 734
            +V D+  VE  +  + P E   L+V NLP   D  +L  +F   G V   EV  N ET  SRG G++TM ++  A+ A+  L+G D+ GR++ V  +    S  R        P+  F  E   ++YVGNL W V    L   F   G VVSARV+ DR+   +R FGF+
Sbjct:   35 QVSDEGGVEGGQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPER-------APRGDF--EPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFV 195          
BLAST of CN182042 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.313e-17
Identity = 76/246 (30.89%), Postives = 112/246 (45.53%), Query Frame = 3
Query:    9 LTTSSSLFTKITPPATPKRFGFTSLPTLINFQYPKLSSCWSRSHPAGFRSVLXXXXXXXXXXXXXINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID----MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFI 734
            LT  + L  K T   T   F F+  P+ +N      SSC+S       R V                  D +   E D D  VEE R+ +   +++V NL  S D + L E+F+  G V  VEV  +  TG SRG G++TM S    + A    +G ++ GR +RV          NS  R   +     +    ++S +++YVGNL+W V  + L   F   G VV A+V++DR    +R FGF+
Sbjct:   13 LTPQTLLLPKPTSQTTSLSF-FSLPPSSLNLSLSSPSSCFSSRF---VRKVTLPDF-------------DQIEDVE-DGDEGVEEERNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFV 240          
BLAST of CN182042 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.239e-17
Identity = 54/166 (32.53%), Postives = 79/166 (47.59%), Query Frame = 3
Query:  237 VDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFI 734
            V +    EE +  +   +L+V NLP   D   L ++F+  G V   EV  N ET  SRG G++TM ++  A  A+      D+ GR + V  +    SR   A     P          +++YVGN+ W +    L   F   G VVSARV+ DR+   +R FGF+
Sbjct:   81 VGEAGETEEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQP---------TYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFV 237          
BLAST of CN182042 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.988e-17
Identity = 59/172 (34.30%), Postives = 85/172 (49.42%), Query Frame = 3
Query:  219 NVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFI 734
            +V    V + +   EP   A+   L+V NL    +   L  +F+  GTV   EV  N ET  SRG G++TM S++ A+ A+   +  D+ GR + V  +    SR         P +   VYE   ++YVGNL W V    L   F   G VV ARV++DR+   +R FGF+
Sbjct:  131 DVSEGAVSERAEFPEPSEEAK---LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSR---------PERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFV 290          
BLAST of CN182042 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.737e-15
Identity = 57/184 (30.98%), Postives = 92/184 (50.00%), Query Frame = 3
Query:  234 EVDDDSSVE----EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE-------------SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFI 734
            EV++D   +    + +S +   +L+V NLP + D ++L ++F+  G V  VEV  +  TG SRG G++TM S++  + A    +G ++ GR +RV        R    +     P+  F                S +++YVGNLSW V    L + F   G VV ARV++DR    ++ FGF+
Sbjct:   70 EVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKR---EDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFV 250          
BLAST of CN182042 vs. ExPASy Swiss-Prot
Match: PABP_PICGU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia guilliermondii GN=PAB1 PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.735e-13
Identity = 54/167 (32.34%), Postives = 88/167 (52.69%), Query Frame = 3
Query:  240 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFI 734
            D +S  EE   +A    +YV NL    D ++  E+FKPFG V SV +  + E G SRG G++   +  SA NA+  ++  ++ G+++ V  +     R    + L    +  K+  Y+  + L+V NL  ++  E L   F  FGT+ SARV+ D  G+ ++ FGF+
Sbjct:  226 DRESKFEE--MKANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQE-GKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVN-LFVKNLDDSIDSEKLEEEFKPFGTITSARVMVDDAGK-SKGFGFV 387          
BLAST of CN182042 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.699e-12
Identity = 49/152 (32.24%), Postives = 80/152 (52.63%), Query Frame = 3
Query:  291 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS----IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFI 734
            LYV N+PR+ +  EL  + +  G +   EV  +  +G SR  G++TM ++  A   I  L+ +++GGR+++V  +      M+  T  AE         FV ESP+K+Y+GNL+  V  E L++ F   G V+ A+V        +  FGF+
Sbjct:   86 LYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAE------DSQFV-ESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFV 230          
The following BLAST results are available for this feature:
BLAST of CN182042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
ROC5_NICSY9.386e-2440.3533 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC4_NICSY1.074e-1934.5231 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_NICSY2.645e-1834.5529 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
ROC1_SPIOL4.512e-1836.4728 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]
ROC1_NICPL1.313e-1730.8930 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC3_NICSY2.239e-1732.5328 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC3_ARATH4.988e-1734.3031 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
ROC1_ARATH2.737e-1530.98Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
PABP_PICGU9.735e-1332.34Polyadenylate-binding protein, cytoplasmic and nuc... [more]
RRP2_SPIOL3.699e-1232.2430S ribosomal protein 2, chloroplastic OS=Spinacia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001N21_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001N21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182042 ID=CN182042; Name=CN182042; organism=Citrus sinensis; type=EST; length=736bp
GAGGCTTCTTAACAACTTCTTCCTCTCTGTTCACAAAAATTACTCCTCCA
GCTACACCAAAACGATTCGGTTTTACCTCTCTGCCAACTTTAATTAATTT
CCAGTACCCAAAGCTCTCATCTTGCTGGTCCCGCTCTCACCCAGCTGGGT
TTCGCTCAGTTCTTGCGGTGGTAGATGAGGAAGCGGTAGTAGTTGAAGAT
GAGATTAACGGCAAGGATAATGTTGGTGGAAACGAAGTGGACGACGACAG
TTCAGTCGAAGAGCCAAGGAGCCGCGCAAGGCCCTGTGAGTTATACGTGT
GTAACTTGCCCAGGAGCTTTGACATTTCAGAGCTTCTTGAGATGTTCAAG
CCTTTTGGAACCGTTCTTTCCGTTGAGGTTTCGAGGAATCCCGAAACAGG
CATAAGTCGTGGATGCGGTTACCTGACAATGGGTTCGATCAATTCAGCAA
AAAATGCAATTATTGCATTGGACGGATCTGATGTGGGTGGACGTGAAATG
CGGGTGAGATTTTCAATTGATATGAATTCGCGGACTAGGAATGCTGAGGC
ATTGATTTCACCACCAAAGAAGATTTTTGTCTATGAAAGCCCTCATAAAT
TATATGTTGGCAATCTTTCCTGGGCTGTAAAACCTGAGGATTTGAGAAAT
CATTTTGGCCGGTTTGGGACTGTGGTCAGTGCTAGAGTGTTGCACGATCG
TAAAGGACAAACCACCCGAGTTTTTGGGTTTATTTC
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