CN182008

Overview
NameCN182008
Unique NameCN182008
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2297 contig Csv1_Contig2297:1..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182008 vs. ExPASy Swiss-Prot
Match: EFTS_ACICJ (Elongation factor Ts OS=Acidiphilium cryptum (strain JF-5) GN=tsf PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.043e-18
Identity = 45/83 (54.22%), Postives = 62/83 (74.70%), Query Frame = 1
Query:  325 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQ 573
            ++K LRE+T A M D K ALV+ D D+EAA+  LRK+G   A+KKS RTA EGL+ +A   ++A+++E+N ETDFV+RNE FQ
Sbjct:    8 MVKDLREKTGAGMMDCKKALVETDGDMEAAVDWLRKKGLAAAAKKSGRTAAEGLVGVAHEGNRASMVEVNAETDFVARNEAFQ 90          
BLAST of CN182008 vs. ExPASy Swiss-Prot
Match: EFTS_THET8 (Elongation factor Ts OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=tsf PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.176e-17
Identity = 46/88 (52.27%), Postives = 62/88 (70.45%), Query Frame = 1
Query:  316 QVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLA--LAQNESKAAVIELNCETDFVSRNEIFQ 573
            Q+ LIK+LRE T A M DVK AL D  WD E A++ LR+RG + A+KK+ R A EG++   +  N+    ++ELNCETDFV+RNE+FQ
Sbjct:    3 QMELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLLRERGAMKAAKKADREAREGIIGHYIHHNQRVGVLVELNCETDFVARNELFQ 90          
BLAST of CN182008 vs. ExPASy Swiss-Prot
Match: EFTS_THET2 (Elongation factor Ts OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=tsf PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.536e-17
Identity = 46/88 (52.27%), Postives = 61/88 (69.32%), Query Frame = 1
Query:  316 QVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLA--LAQNESKAAVIELNCETDFVSRNEIFQ 573
            Q  LIK+LRE T A M DVK AL D  WD E A++ LR+RG + A+KK+ R A EG++   +  N+    ++ELNCETDFV+RNE+FQ
Sbjct:    3 QTELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLLRERGAMKAAKKADREAREGIIGHYIHHNQRVGVLVELNCETDFVARNELFQ 90          
BLAST of CN182008 vs. ExPASy Swiss-Prot
Match: EFTS_RHIME (Elongation factor Ts OS=Rhizobium meliloti GN=tsf PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.838e-17
Identity = 43/83 (51.81%), Postives = 60/83 (72.29%), Query Frame = 1
Query:  325 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQ 573
            ++K+LRE+T A M D K AL + + D+EAA+  LR +G   A KKS RTA EGL+ +A + +KA V+E+N ETDFV+RN+ FQ
Sbjct:    7 MVKELREKTGAGMMDCKKALAETNGDMEAAIDWLRAKGIAKADKKSGRTAAEGLIGIASSGTKAVVVEINSETDFVARNDAFQ 89          
BLAST of CN182008 vs. ExPASy Swiss-Prot
Match: EFTS_AGRRK (Elongation factor Ts OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=tsf PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.838e-17
Identity = 46/83 (55.42%), Postives = 60/83 (72.29%), Query Frame = 1
Query:  325 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQ 573
            L+K+LRE++ A M D K AL++ + DIEAA+  LR +G   A KKS RTA EGL+A+A    KA V+ELN ETDFV+RN+ FQ
Sbjct:    8 LVKELREKSGAGMMDCKKALIETNGDIEAAIDWLRAKGISKADKKSGRTAAEGLVAIAGAGHKAVVVELNSETDFVARNDAFQ 90          
BLAST of CN182008 vs. ExPASy Swiss-Prot
Match: EFTS_RHORT (Elongation factor Ts OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=tsf PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.624e-17
Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = 1
Query:  325 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQ 573
            L+K LREQT A M D K AL +   D+EAA+  LRK+G   A+KK+ RTA+EGL+ +A   +  AV+E+N ETDFV+RN+ FQ
Sbjct:    8 LVKSLREQTGAGMMDCKKALTETAGDVEAAIDWLRKKGLAAAAKKAGRTASEGLVGIATAGTAGAVVEVNAETDFVARNDTFQ 90          
BLAST of CN182008 vs. ExPASy Swiss-Prot
Match: EFTS_SINMW (Elongation factor Ts OS=Sinorhizobium medicae (strain WSM419) GN=tsf PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.301e-16
Identity = 43/83 (51.81%), Postives = 59/83 (71.08%), Query Frame = 1
Query:  325 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQ 573
            ++K+LRE+T A M D K AL + + D+EAA+  LR +G   A KKS RTA EGL+ +A   +KA V+E+N ETDFV+RN+ FQ
Sbjct:    7 MVKELREKTGAGMMDCKKALAETNGDMEAAIDWLRAKGIAKADKKSGRTAAEGLIGIASAGAKAVVVEINSETDFVARNDAFQ 89          
BLAST of CN182008 vs. ExPASy Swiss-Prot
Match: EFTS_MYCAP (Elongation factor Ts OS=Mycoplasma agalactiae (strain PG2) GN=tsf PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.301e-16
Identity = 41/86 (47.67%), Postives = 61/86 (70.93%), Query Frame = 1
Query:  313 EQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIF 570
            +++ LIK+LRE+T+A M D K AL   +WD+E A+  L+K GK+ A+ K++R + +GLL  A N  +A ++ELNCETDFV+  E F
Sbjct:    2 DKMALIKELRERTAAGMSDCKKALEVSNWDVEEAISFLKKNGKIKAASKANRISADGLLVEAGNNERAVLVELNCETDFVAHGEEF 87          
BLAST of CN182008 vs. ExPASy Swiss-Prot
Match: EFTS_GRABC (Elongation factor Ts OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=tsf PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.301e-16
Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = 1
Query:  325 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQ 573
            L+K+LRE T A M D K AL + + D+EAA+  LRK+G   A+KKS R A EGL+ +A     AA++E+N ETDFV+RNE+FQ
Sbjct:    8 LVKELRETTGAGMMDCKKALSETNGDLEAAIDWLRKKGLSAAAKKSGRVAAEGLVGVASAPQTAAMVEVNAETDFVARNELFQ 90          
BLAST of CN182008 vs. ExPASy Swiss-Prot
Match: EFTS_RHISN (Elongation factor Ts OS=Rhizobium sp. (strain NGR234) GN=tsf PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.218e-16
Identity = 43/83 (51.81%), Postives = 58/83 (69.88%), Query Frame = 1
Query:  325 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQ 573
            ++K LRE+T A M D K AL + + D+EAA+  LR +G   A KKS RTA EGL+ +A   +KA V+E+N ETDFV+RN+ FQ
Sbjct:    7 MVKDLREKTGAGMMDCKKALAETNGDMEAAIDWLRAKGIAKADKKSGRTAAEGLIGIASAGNKAVVVEINSETDFVARNDAFQ 89          
The following BLAST results are available for this feature:
BLAST of CN182008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTS_ACICJ4.043e-1854.22Elongation factor Ts OS=Acidiphilium cryptum (stra... [more]
EFTS_THET81.176e-1752.27Elongation factor Ts OS=Thermus thermophilus (stra... [more]
EFTS_THET21.536e-1752.27Elongation factor Ts OS=Thermus thermophilus (stra... [more]
EFTS_RHIME5.838e-1751.81Elongation factor Ts OS=Rhizobium meliloti GN=tsf ... [more]
EFTS_AGRRK5.838e-1755.42Elongation factor Ts OS=Agrobacterium radiobacter ... [more]
EFTS_RHORT7.624e-1753.01Elongation factor Ts OS=Rhodospirillum rubrum (str... [more]
EFTS_SINMW1.301e-1651.81Elongation factor Ts OS=Sinorhizobium medicae (str... [more]
EFTS_MYCAP1.301e-1647.67Elongation factor Ts OS=Mycoplasma agalactiae (str... [more]
EFTS_GRABC1.301e-1653.01Elongation factor Ts OS=Granulibacter bethesdensis... [more]
EFTS_RHISN2.218e-1651.81Elongation factor Ts OS=Rhizobium sp. (strain NGR2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001M24_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182008 ID=CN182008; Name=CN182008; organism=Citrus sinensis; type=EST; length=689bp
GAGGCTCTTCGGTAGTCATCAGTATCAACACCAGCCGTCGGTCCTTACTT
TTACCTCCGGTTATTCAATAGCATAAAGGGTACTGGAATGGCCTGTTTTC
GAAGTGCAAAGCATCCATTTAGGATTTTCTTCTACAACAGACTCATTGCT
GCCACAAACAGTAAAAATGGATACTCTACTTGTGCAAGCAAAGGGACTCC
GGTTTATCAAGCTAGGCAGATCAAGGACTTATTCTCATTCAAATACCTGA
ACCCAAAATCCTCTTTTGCTTTAATTTCAAGAAACTTCAGTGATCAAGCT
CCTGCGGCTACGGAGCAAGTGAATCTCATTAAGCAGTTAAGGGAACAAAC
AAGTGCTCCAATGAAGGATGTCAAGTTGGCTCTTGTTGATTGCGATTGGG
ATATTGAGGCTGCACTGAAGGAATTGAGGAAACGAGGGAAAGTTCTGGCG
TCAAAGAAGTCGTCTCGAACTGCCACTGAGGGCTTACTTGCTTTAGCGCA
GAATGAGAGCAAGGCTGCTGTTATTGAGCTTAATTGTGAGACCGATTTTG
TTTCCAGGAATGAGATATTTCAGTACTTGGCCTTAGCTTTGGCAAAGCAA
GCTTTGGTGGCTGAGAATGTTTCACAGCCAGTATCTGGGCTCTTTCCTGT
TGGTCCTGAGTATTTGGAGGGCTTGAAGTTGAATCTTGA
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