FC921837

Overview
NameFC921837
Unique NameFC921837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length229
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11760 contig Csv1_Contig11760:513..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921837 vs. ExPASy Swiss-Prot
Match: DXS_ORYSJ (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Oryza sativa subsp. japonica GN=CLA1 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.732e-20
Identity = 39/58 (67.24%), Postives = 45/58 (77.59%), Query Frame = 3
Query:   54 RE*EKMPTPGPVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTYT 227
            RE +   T GPVLIH VTEKG+GYP AE AAD+ HGV KFDP TGKQFK+ + TL+YT
Sbjct:  341 REVKSTKTTGPVLIHVVTEKGRGYPYAERAADKYHGVAKFDPATGKQFKSPAKTLSYT 398          

HSP 2 Score: 34.6538 bits (78), Expect = 2.732e-20
Identity = 12/21 (57.14%), Postives = 18/21 (85.71%), Query Frame = 2
Query:    2 YLGPVDRHNVEDLVTIFQRVR 64
            Y+GPVD HN++DL+TI + V+
Sbjct:  324 YIGPVDGHNIDDLITILREVK 344          
BLAST of FC921837 vs. ExPASy Swiss-Prot
Match: DXS_CAPAN (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Capsicum annuum GN=TKT2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 8.315e-19
Identity = 37/58 (63.79%), Postives = 42/58 (72.41%), Query Frame = 3
Query:   54 RE*EKMPTPGPVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTYT 227
            +E     T GPVLIH VTEKG+GYP AE AAD+ HGV KFDP TGKQFK  + T +YT
Sbjct:  344 KEVRSTKTTGPVLIHVVTEKGRGYPYAERAADKYHGVAKFDPATGKQFKGSAKTQSYT 401          

HSP 2 Score: 34.2686 bits (77), Expect = 8.315e-19
Identity = 12/21 (57.14%), Postives = 18/21 (85.71%), Query Frame = 2
Query:    2 YLGPVDRHNVEDLVTIFQRVR 64
            Y+GPVD HN++DL++I + VR
Sbjct:  327 YIGPVDGHNIDDLISILKEVR 347          
BLAST of FC921837 vs. ExPASy Swiss-Prot
Match: DXS_ARATH (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=CLA1 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.406e-18
Identity = 37/58 (63.79%), Postives = 44/58 (75.86%), Query Frame = 3
Query:   54 RE*EKMPTPGPVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTYT 227
            +E +   T GPVLIH VTEKG+GYP AE A D+ HGVVKFDP TG+QFKT + T +YT
Sbjct:  345 KEVKSTRTTGPVLIHVVTEKGRGYPYAERADDKYHGVVKFDPATGRQFKTTNKTQSYT 402          

HSP 2 Score: 33.113 bits (74), Expect = 1.406e-18
Identity = 12/21 (57.14%), Postives = 17/21 (80.95%), Query Frame = 2
Query:    2 YLGPVDRHNVEDLVTIFQRVR 64
            Y+GPVD HN++DLV I + V+
Sbjct:  328 YIGPVDGHNIDDLVAILKEVK 348          
BLAST of FC921837 vs. ExPASy Swiss-Prot
Match: DXS_AZOC5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=dxs PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.678e-16
Identity = 33/49 (67.35%), Postives = 39/49 (79.59%), Query Frame = 3
Query:   81 GPVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTYT 227
            GP+L+H VT+KGKGYPPAEA+AD+ HGVVKFD  TG Q K KS   +YT
Sbjct:  274 GPILVHVVTQKGKGYPPAEASADKYHGVVKFDVVTGAQVKAKSNAPSYT 322          

HSP 2 Score: 30.0314 bits (66), Expect = 2.678e-16
Identity = 10/22 (45.45%), Postives = 17/22 (77.27%), Query Frame = 2
Query:    2 YLGPVDRHNVEDLVTIFQRVRE 67
            Y+GP+D HN+E L+ + + VR+
Sbjct:  249 YVGPIDGHNLEHLLPVLKNVRD 270          
BLAST of FC921837 vs. ExPASy Swiss-Prot
Match: DXS_BARQU (1-deoxy-D-xylulose-5-phosphate synthase OS=Bartonella quintana GN=dxs PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.832e-15
Identity = 35/62 (56.45%), Postives = 42/62 (67.74%), Query Frame = 3
Query:   42 LPSFRE*EKMPTPGPVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTYT 227
            LP  +   + P  GPVL+H VT KGKGY PAEA++D+ HGV  FD  TGKQ KT+S  L YT
Sbjct:  263 LPVLKNVREYPN-GPVLVHVVTHKGKGYAPAEASSDKYHGVNSFDVVTGKQIKTQSNALAYT 323          

HSP 2 Score: 29.6462 bits (65), Expect = 2.832e-15
Identity = 10/22 (45.45%), Postives = 17/22 (77.27%), Query Frame = 2
Query:    2 YLGPVDRHNVEDLVTIFQRVRE 67
            Y+GP+D HN++ L+ + + VRE
Sbjct:  250 YVGPIDGHNLKHLLPVLKNVRE 271          
BLAST of FC921837 vs. ExPASy Swiss-Prot
Match: DXS_MESSB (1-deoxy-D-xylulose-5-phosphate synthase OS=Mesorhizobium sp. (strain BNC1) GN=dxs PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.679e-15
Identity = 33/49 (67.35%), Postives = 38/49 (77.55%), Query Frame = 3
Query:   81 GPVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTYT 227
            GPVLIH VT+KGKGYPPAEAAAD+ HGV KFD  TG Q K+ +   +YT
Sbjct:  288 GPVLIHVVTQKGKGYPPAEAAADKYHGVAKFDVITGAQAKSPAGAPSYT 336          

HSP 2 Score: 29.6462 bits (65), Expect = 3.679e-15
Identity = 10/23 (43.48%), Postives = 18/23 (78.26%), Query Frame = 2
Query:    2 YLGPVDRHNVEDLVTIFQRVREN 70
            ++GP+D H++E LV + + VR+N
Sbjct:  263 HIGPIDGHDLEALVPVLRNVRDN 285          
BLAST of FC921837 vs. ExPASy Swiss-Prot
Match: DXS_XANP2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=dxs PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.782e-15
Identity = 32/49 (65.31%), Postives = 38/49 (77.55%), Query Frame = 3
Query:   81 GPVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTYT 227
            GP+L+H VT+KGKGY PAEA+AD+ HGVVKFD  TG Q K KS   +YT
Sbjct:  274 GPILVHVVTQKGKGYAPAEASADKYHGVVKFDVVTGAQVKAKSNAPSYT 322          

HSP 2 Score: 28.8758 bits (63), Expect = 4.782e-15
Identity = 9/22 (40.91%), Postives = 17/22 (77.27%), Query Frame = 2
Query:    2 YLGPVDRHNVEDLVTIFQRVRE 67
            Y+GP+D HN++ L+ + + VR+
Sbjct:  249 YVGPIDGHNLDHLLPVLKNVRD 270          
BLAST of FC921837 vs. ExPASy Swiss-Prot
Match: DXS_BART1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=dxs PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.215e-15
Identity = 32/49 (65.31%), Postives = 37/49 (75.51%), Query Frame = 3
Query:   81 GPVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTYT 227
            GPVL+H VT KGKGYPPAEA++D+ HGV +FD  TGKQ K  S  L YT
Sbjct:  275 GPVLVHVVTHKGKGYPPAEASSDKYHGVNRFDVTTGKQVKASSNILPYT 323          

HSP 2 Score: 28.4906 bits (62), Expect = 6.215e-15
Identity = 10/22 (45.45%), Postives = 16/22 (72.73%), Query Frame = 2
Query:    2 YLGPVDRHNVEDLVTIFQRVRE 67
            Y+GP+D HN+  L+ + + VRE
Sbjct:  250 YVGPIDGHNLGHLLPVLKNVRE 271          
BLAST of FC921837 vs. ExPASy Swiss-Prot
Match: DXS_BARHE (1-deoxy-D-xylulose-5-phosphate synthase OS=Bartonella henselae GN=dxs PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.074e-15
Identity = 36/62 (58.06%), Postives = 41/62 (66.13%), Query Frame = 3
Query:   42 LPSFRE*EKMPTPGPVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTYT 227
            LP  +   + PT GPVLIH VT KGKGY PAEA+ D+ HGV +FD  TGKQ K  S  L YT
Sbjct:  263 LPVLKNVREYPT-GPVLIHVVTHKGKGYAPAEASLDKYHGVNRFDIITGKQVKASSNVLPYT 323          

HSP 2 Score: 29.6462 bits (65), Expect = 8.074e-15
Identity = 10/22 (45.45%), Postives = 17/22 (77.27%), Query Frame = 2
Query:    2 YLGPVDRHNVEDLVTIFQRVRE 67
            Y+GP+D HN++ L+ + + VRE
Sbjct:  250 YVGPIDGHNLKHLLPVLKNVRE 271          
BLAST of FC921837 vs. ExPASy Swiss-Prot
Match: DXS_RHOP5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain BisA53) GN=dxs PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 8.074e-15
Identity = 33/48 (68.75%), Postives = 36/48 (75.00%), Query Frame = 3
Query:   81 GPVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTY 224
            GP LIH VT+KGKGY PAEAAAD+ H VVKFD  TG Q KTKS   +Y
Sbjct:  276 GPFLIHVVTQKGKGYAPAEAAADKYHAVVKFDIATGTQAKTKSNAPSY 323          

HSP 2 Score: 30.8018 bits (68), Expect = 8.074e-15
Identity = 11/22 (50.00%), Postives = 17/22 (77.27%), Query Frame = 2
Query:    2 YLGPVDRHNVEDLVTIFQRVRE 67
            Y+GP+D HN++ L+ I Q VR+
Sbjct:  251 YVGPIDGHNLDHLLPILQNVRD 272          
The following BLAST results are available for this feature:
BLAST of FC921837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
DXS_ORYSJ2.732e-2067.24Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_CAPAN8.315e-1963.79Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_ARATH1.406e-1863.79Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_AZOC52.678e-1667.351-deoxy-D-xylulose-5-phosphate synthase OS=Azorhiz... [more]
DXS_BARQU2.832e-1556.451-deoxy-D-xylulose-5-phosphate synthase OS=Bartone... [more]
DXS_MESSB3.679e-1567.351-deoxy-D-xylulose-5-phosphate synthase OS=Mesorhi... [more]
DXS_XANP24.782e-1565.311-deoxy-D-xylulose-5-phosphate synthase OS=Xanthob... [more]
DXS_BART16.215e-1565.311-deoxy-D-xylulose-5-phosphate synthase OS=Bartone... [more]
DXS_BARHE8.074e-1558.061-deoxy-D-xylulose-5-phosphate synthase OS=Bartone... [more]
DXS_RHOP58.074e-1568.751-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]

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Properties
Property NameValue
Genbank descriptionC06053A02T7 RindPdigS Citrus sinensis cDNA clone C06053A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921837 ID=FC921837; Name=FC921837; organism=Citrus sinensis; type=EST; length=229bp
CTACCTTGGTCCAGTGGATAGACACAATGTCGAAGATTTAGTTACCATCT
TTCAGAGAGTGAGAGAAAATGCCTACGCCAGGGCCAGTTCTGATCCATGC
TGTAACAGAGAAGGGAAAGGGCTATCCCCCAGCGGAGGCAGCAGCTGATA
GAATGCATGGAGTTGTCAAGTTCGATCCAAAAACTGGCAAGCAATTTAAG
ACCAAATCCCCTACGCTCACGTATACACA
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