CX675896

Overview
NameCX675896
Unique NameCX675896
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length813
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675896 vs. ExPASy Swiss-Prot
Match: PCNA_TOBAC (Proliferating cell nuclear antigen OS=Nicotiana tabacum GN=PCNA PE=2 SV=1)

HSP 1 Score: 371.318 bits (952), Expect = 3.525e-102
Identity = 186/198 (93.94%), Postives = 195/198 (98.48%), Query Frame = -1
Query:  220 SMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADXEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEDETKP 813
            SMGMNL N++KMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIAD EMKLMDIDSEHLGIPEAEYHAIVRMPSAEF+RICKDL+SIGDTVVISVTKEGVKFSTRGDIGTANIV RQNTTVDKPEEAT+IEM+EPVSLTFALRY+NSFT+ATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDE+ETKP
Sbjct:   67 SMGMNLANMAKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFSRICKDLSSIGDTVVISVTKEGVKFSTRGDIGTANIVCRQNTTVDKPEEATVIEMNEPVSLTFALRYLNSFTKATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEEETKP 264          
BLAST of CX675896 vs. ExPASy Swiss-Prot
Match: PCNA_SOYBN (Proliferating cell nuclear antigen (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 370.548 bits (950), Expect = 6.013e-102
Identity = 182/200 (91.00%), Postives = 198/200 (99.00%), Query Frame = -1
Query:  214 SMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADXEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEDETKPQV 813
            SMGMNLNN++KMLKCAGNDDIIT+KADDGSDTVTFMFESPTQDKI+D EMKLMDIDSEHLGIPEAEYHAIV+MPS+EFARICKDL+SIGDTVVISVTKEGVKFST+GDIGTANIV RQNT+VDKPEEAT+IEM+EPVSLTFALRYMNSFT+ATPLSNTVTISLS+ELPVVVEYKIAEMGY+RFYLAPKIEEDE++TKPQV
Sbjct:   37 SMGMNLNNMAKMLKCAGNDDIITIKADDGSDTVTFMFESPTQDKISDFEMKLMDIDSEHLGIPEAEYHAIVKMPSSEFARICKDLSSIGDTVVISVTKEGVKFSTKGDIGTANIVCRQNTSVDKPEEATVIEMNEPVSLTFALRYMNSFTKATPLSNTVTISLSNELPVVVEYKIAEMGYVRFYLAPKIEEDEEDTKPQV 236          
BLAST of CX675896 vs. ExPASy Swiss-Prot
Match: PCNA1_DAUCA (Proliferating cell nuclear antigen OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 368.622 bits (945), Expect = 2.285e-101
Identity = 184/198 (92.93%), Postives = 195/198 (98.48%), Query Frame = -1
Query:  220 SMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADXEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEDETKP 813
            SMGMNL N++KMLKCAGNDDIIT+KADDGSDTVTFMFESPTQDKIAD EMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDL+SIGDTVVISVTKEGVKFSTRGDIGTANIV RQNTTVDKPEEAT+IEM+EPVSLTFALRYMNSFT+A+PLS+TVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEE+EDE+KP
Sbjct:   67 SMGMNLGNMAKMLKCAGNDDIITIKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLSSIGDTVVISVTKEGVKFSTRGDIGTANIVCRQNTTVDKPEEATVIEMNEPVSLTFALRYMNSFTKASPLSSTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEEEDESKP 264          
BLAST of CX675896 vs. ExPASy Swiss-Prot
Match: PCNA_CATRO (Proliferating cell nuclear antigen OS=Catharanthus roseus PE=2 SV=1)

HSP 1 Score: 363.999 bits (933), Expect = 5.628e-100
Identity = 182/195 (93.33%), Postives = 192/195 (98.46%), Query Frame = -1
Query:  229 SMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADXEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEDE 813
            SMGMNLNN++KMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKI+D EMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDL+SIGDTVVISVTKEGVKFSTRGDIGTANIV RQNTTVDKP+EATIIEM+EPVSLTFALRY+NSFT+ATPLSN VTISLSSELPVVVEYKIAEMGYIRFYLAPKIEED++E
Sbjct:   67 SMGMNLNNMAKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKISDFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLSSIGDTVVISVTKEGVKFSTRGDIGTANIVCRQNTTVDKPDEATIIEMNEPVSLTFALRYLNSFTKATPLSNNVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDDEE 261          
BLAST of CX675896 vs. ExPASy Swiss-Prot
Match: PCNA_PEA (Proliferating cell nuclear antigen OS=Pisum sativum GN=PCNA PE=2 SV=1)

HSP 1 Score: 362.844 bits (930), Expect = 1.254e-99
Identity = 178/199 (89.45%), Postives = 196/199 (98.49%), Query Frame = -1
Query:  217 SMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADXEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEDETKPQ 813
            SMGMNLNN++KMLKCAGNDDIIT+KADDGSDTVTFMFESPTQDKI+D EMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDL+SIGDTVVI+V+KEGVKFST+GDIG+ANIV RQNTTVDKPEEAT+IEM+EPV+L FALRYMNSFT+ATPLS++VTISLS+ELPVVVEYKIAEMGY+RFYLAPKIEEDE+ETKPQ
Sbjct:   67 SMGMNLNNMAKMLKCAGNDDIITIKADDGSDTVTFMFESPTQDKISDFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLSSIGDTVVIAVSKEGVKFSTKGDIGSANIVCRQNTTVDKPEEATVIEMNEPVALQFALRYMNSFTKATPLSSSVTISLSNELPVVVEYKIAEMGYVRFYLAPKIEEDEEETKPQ 265          
BLAST of CX675896 vs. ExPASy Swiss-Prot
Match: PCNA_POPNI (Proliferating cell nuclear antigen OS=Populus nigra GN=PCNA PE=2 SV=1)

HSP 1 Score: 360.147 bits (923), Expect = 8.127e-99
Identity = 178/195 (91.28%), Postives = 190/195 (97.44%), Query Frame = -1
Query:  229 SMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADXEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEDE 813
            SMGMNL N+SKMLKCAGNDDIIT+K DDGSDTVTFMFESPTQDKIAD EMKLMDIDSEHLGIPEAEYHAIV+MPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPE+AT+IEM+EPVS+TFALRYMNSFT+ATPLSNTVTIS+S +LPVVVEYKIAEMGY+RFYLAPK+EEDE E
Sbjct:   67 SMGMNLGNMSKMLKCAGNDDIITIKGDDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVKMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEDATVIEMNEPVSMTFALRYMNSFTKATPLSNTVTISMSPDLPVVVEYKIAEMGYVRFYLAPKMEEDEPE 261          
BLAST of CX675896 vs. ExPASy Swiss-Prot
Match: PCNA2_ARATH (Proliferating cell nuclear antigen 2 OS=Arabidopsis thaliana GN=At2g29570 PE=1 SV=1)

HSP 1 Score: 354.755 bits (909), Expect = 3.414e-97
Identity = 177/199 (88.94%), Postives = 192/199 (96.48%), Query Frame = -1
Query:  217 SMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADXEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEDETKPQ 813
            SMGMNL N+SKMLKCAGNDDIIT+KADDGSDTVTFMFESPTQDKIAD EMKLMDIDSEHLGIP+AEYH+IVRMPS EF+RICKDL+SIGDTVVISVTKEGVKFST GDIGTANIVLRQNTTVDKPE+A +IEM+EPVSL+FALRYMNSFT+ATPLS TVTISLSSELPVVVEYK+AEMGYIR+YLAPKIEE+ED TKP+
Sbjct:   67 SMGMNLGNMSKMLKCAGNDDIITIKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPDAEYHSIVRMPSGEFSRICKDLSSIGDTVVISVTKEGVKFSTAGDIGTANIVLRQNTTVDKPEDAIVIEMNEPVSLSFALRYMNSFTKATPLSETVTISLSSELPVVVEYKVAEMGYIRYYLAPKIEEEED-TKPE 264          
BLAST of CX675896 vs. ExPASy Swiss-Prot
Match: PCNA1_ARATH (Proliferating cellular nuclear antigen 1 OS=Arabidopsis thaliana GN=PCNA PE=1 SV=2)

HSP 1 Score: 349.362 bits (895), Expect = 1.435e-95
Identity = 173/194 (89.18%), Postives = 187/194 (96.39%), Query Frame = -1
Query:  232 SMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADXEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDED 813
            SMGMNL N+SKMLKCAGNDDIIT+KADDG DTVTFMFESPTQDKIAD EMKLMDIDSEHLGIP+AEYH+IVRMPS EF+RICKDL+SIGDTVVISVTKEGVKFST GDIGTANIVLRQNTTVDKPE+A +IEM EPVSL+FALRYMNSFT+ATPLS+TVTISLSSELPVVVEYK+AEMGYIR+YLAPKIEE+ED
Sbjct:   67 SMGMNLGNMSKMLKCAGNDDIITIKADDGGDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPDAEYHSIVRMPSNEFSRICKDLSSIGDTVVISVTKEGVKFSTAGDIGTANIVLRQNTTVDKPEDAIVIEMKEPVSLSFALRYMNSFTKATPLSDTVTISLSSELPVVVEYKVAEMGYIRYYLAPKIEEEED 260          
BLAST of CX675896 vs. ExPASy Swiss-Prot
Match: PCNA_BRANA (Proliferating cell nuclear antigen OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 347.436 bits (890), Expect = 5.451e-95
Identity = 171/195 (87.69%), Postives = 188/195 (96.41%), Query Frame = -1
Query:  229 SMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADXEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEDE 813
            SMGMNL N+SKMLKCAGNDDIIT+KADDG DTVTFMFESP QDKIAD EMKLMDIDSEHLGIP+AEYH+IVRMPS EF+RICKDL++IGDTVVISVTKEGVKFST GDIGTANIVLRQNTTVDKPE+A +IEM+EPVSL+FALRYMNSFT+ATPLS+TVTISLSSELPVVVEYK+AEMGYIR+YLAPKIEEDE++
Sbjct:   67 SMGMNLGNMSKMLKCAGNDDIITIKADDGGDTVTFMFESPKQDKIADFEMKLMDIDSEHLGIPDAEYHSIVRMPSNEFSRICKDLSTIGDTVVISVTKEGVKFSTAGDIGTANIVLRQNTTVDKPEDAIVIEMNEPVSLSFALRYMNSFTKATPLSDTVTISLSSELPVVVEYKVAEMGYIRYYLAPKIEEDEED 261          
BLAST of CX675896 vs. ExPASy Swiss-Prot
Match: PCNA_ORYSJ (Proliferating cell nuclear antigen OS=Oryza sativa subsp. japonica GN=Os02g0805200 PE=2 SV=2)

HSP 1 Score: 344.354 bits (882), Expect = 4.615e-94
Identity = 171/194 (88.14%), Postives = 185/194 (95.36%), Query Frame = -1
Query:  232 SMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADXEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDED 813
            SMGMNLNN++KML+CAGNDDIIT+KADDGSDTVTFMFESP QDKIAD EMKLMDIDSEHLGIP++EY AIVRMPS+EF+RICKDL+SIGDTV+ISVTKEGVKFST GDIGTANIV RQN TVDKPE+ATIIEM EPVSLTFALRYMNSFT+A+PLS  VTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDE+
Sbjct:   67 SMGMNLNNMAKMLRCAGNDDIITIKADDGSDTVTFMFESPNQDKIADFEMKLMDIDSEHLGIPDSEYQAIVRMPSSEFSRICKDLSSIGDTVIISVTKEGVKFSTAGDIGTANIVCRQNKTVDKPEDATIIEMQEPVSLTFALRYMNSFTKASPLSEQVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEE 260          
The following BLAST results are available for this feature:
BLAST of CX675896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
PCNA_TOBAC3.525e-10293.94Proliferating cell nuclear antigen OS=Nicotiana ta... [more]
PCNA_SOYBN6.013e-10291.00Proliferating cell nuclear antigen (Fragment) OS=G... [more]
PCNA1_DAUCA2.285e-10192.93Proliferating cell nuclear antigen OS=Daucus carot... [more]
PCNA_CATRO5.628e-10093.33Proliferating cell nuclear antigen OS=Catharanthus... [more]
PCNA_PEA1.254e-9989.45Proliferating cell nuclear antigen OS=Pisum sativu... [more]
PCNA_POPNI8.127e-9991.28Proliferating cell nuclear antigen OS=Populus nigr... [more]
PCNA2_ARATH3.414e-9788.94Proliferating cell nuclear antigen 2 OS=Arabidopsi... [more]
PCNA1_ARATH1.435e-9589.18Proliferating cellular nuclear antigen 1 OS=Arabid... [more]
PCNA_BRANA5.451e-9587.69Proliferating cell nuclear antigen OS=Brassica nap... [more]
PCNA_ORYSJ4.615e-9488.14Proliferating cell nuclear antigen OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_65F02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-65F02-L3-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675896 ID=CX675896; Name=CX675896; organism=Citrus sinensis; type=EST; length=813bp
GTTCAAAGCAACAAGGACAAAGGAATTGATTACATGTACAACAGTAGGAT
AAAAAAGCCAAGCACATGAAAGGAATTTTTAACAATCTACCGAACTACAA
ACGCTTGGTTTTCCAACATGAAGATTTACGAGAAACATTCTAAAAGCGAA
CTTAAAATATAGGAGTAACTTGATTCAACAAAATGCCATAGCCTACGTGC
CAAATGACACTTAAACTTGAGGCTTGGTCTCATCCTCATCTTCTTCTATC
TTGGGTGCCAAGTAGAATCTAATATAACCCATCTCAGCAATCTTGTATTC
GACCACAACGGGCAATTCTGAGGATAGGCTGATAGTAACAGTATTCGACA
ATGGAGTAGCCCTTGTGAATGAATTCATGTATCTCAGAGCAAAAGTCAAT
GACACTGGCTCATGCATTTCAATTATTGTTGCTTCTTCTGGCTTGTCTAC
TGTAGTATTTTGTCTGAGCACAATATTAGCAGTTCCAATATCACCTCTGG
TAGAGAACTTCACACCTTCCTTTGTGACAGAAATCACAACTGTGTCACCA
ATGCTGGCAAGATCTTTACAAATTCTAGCAAACTCAGCTGAAGGCATCCT
TACAATGGCATGGTATTCAGCCTCCGGTATACCAAGATGCTCACTATCAA
TGTCCATCAGTTTCATCTCANAATCAGCAATCTTATCTTGAGTGGGACTT
TCAAACATGAAAGTAACGGTATCGCTGCCGTCGTCGGCCTTGAGAGTGAT
GATGTCATCGTTGCCAGCACACTTAAGCATCTTCGACACGTTATTGAGAT
TCATTCCCATAGA
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