CN181961

Overview
NameCN181961
Unique NameCN181961
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length564
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11729 contig Csv1_Contig11729:473..1036. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181961 vs. ExPASy Swiss-Prot
Match: RS33_ARATH (40S ribosomal protein S3-3 OS=Arabidopsis thaliana GN=RPS3C PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.810e-38
Identity = 75/102 (73.53%), Postives = 84/102 (82.35%), Query Frame = -3
Query:  257 IMESGAKGCEVIFRGKLGAQRAKSMKFKEGYMVFSGQPGNEYIDFAVRHVFLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEEYVKPTLVAT 562
            +MESGAKGCEVI  GKL A RAKSMKFK+GYMV SGQP  EYID AVRHV LRQGVLG+KVKIML WDP GKQGP TPLPD+V IH+PK+++ Y+ P  V T
Sbjct:  126 VMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVLGLKVKIMLDWDPKGKQGPMTPLPDVVIIHTPKEDDVYIAPAQVVT 227          
BLAST of CN181961 vs. ExPASy Swiss-Prot
Match: RS31_ARATH (40S ribosomal protein S3-1 OS=Arabidopsis thaliana GN=RPS3A PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.414e-37
Identity = 75/104 (72.12%), Postives = 81/104 (77.88%), Query Frame = -3
Query:  251 IMESGAKGCEVIFRGKLGAQRAKSMKFKEGYMVFSGQPGNEYIDFAVRHVFLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEEYVKPTLVATDI 562
            +MESGAKGCEVI  GKL A RAKSMKFK+GYMV SGQP  EYID AVRHV LRQGVLGIKVKIML WDP GK GP TPLPD+V IH+PKD+  Y  P   A  +
Sbjct:  126 VMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVLGIKVKIMLDWDPTGKSGPKTPLPDVVIIHAPKDDVVYSAPAQAAAPV 229          
BLAST of CN181961 vs. ExPASy Swiss-Prot
Match: RS32_ARATH (40S ribosomal protein S3-2 OS=Arabidopsis thaliana GN=RPS3B PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 9.932e-37
Identity = 75/101 (74.26%), Postives = 80/101 (79.21%), Query Frame = -3
Query:  260 IMESGAKGCEVIFRGKLGAQRAKSMKFKEGYMVFSGQPGNEYIDFAVRHVFLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEEYVKPTLVA 562
            +MESGAKGCEVI  GKL A RAKSMKFK+GYMV SGQP  EYID AVRHV LRQGVLGIKVK+ML WDP G  GP TPLPD+V IHSPK+EE    P  VA
Sbjct:  126 VMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDSAVRHVLLRQGVLGIKVKVMLDWDPKGISGPKTPLPDVVIIHSPKEEEAIYAPAQVA 226          
BLAST of CN181961 vs. ExPASy Swiss-Prot
Match: RS3_RAT (40S ribosomal protein S3 OS=Rattus norvegicus GN=Rps3 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.655e-31
Identity = 66/91 (72.53%), Postives = 72/91 (79.12%), Query Frame = -3
Query:  290 IMESGAKGCEVIFRGKLGAQRAKSMKFKEGYMVFSGQPGNEYIDFAVRHVFLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDE 562
            IMESGAKGCEV+  GKL  QRAKSMKF +G M+ SG P N Y+D AVRHV LRQGVLGIKVKIML WDP+GK GP  PLPD V+I  PKDE
Sbjct:  126 IMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE 216          
BLAST of CN181961 vs. ExPASy Swiss-Prot
Match: RS3_MOUSE (40S ribosomal protein S3 OS=Mus musculus GN=Rps3 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.655e-31
Identity = 66/91 (72.53%), Postives = 72/91 (79.12%), Query Frame = -3
Query:  290 IMESGAKGCEVIFRGKLGAQRAKSMKFKEGYMVFSGQPGNEYIDFAVRHVFLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDE 562
            IMESGAKGCEV+  GKL  QRAKSMKF +G M+ SG P N Y+D AVRHV LRQGVLGIKVKIML WDP+GK GP  PLPD V+I  PKDE
Sbjct:  126 IMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE 216          
BLAST of CN181961 vs. ExPASy Swiss-Prot
Match: RS32_XENLA (40S ribosomal protein S3-B OS=Xenopus laevis GN=rps3-B PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.655e-31
Identity = 66/91 (72.53%), Postives = 72/91 (79.12%), Query Frame = -3
Query:  290 IMESGAKGCEVIFRGKLGAQRAKSMKFKEGYMVFSGQPGNEYIDFAVRHVFLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDE 562
            IMESGAKGCEV+  GKL  QRAKSMKF +G M+ SG P N Y+D AVRHV LRQGVLGIKVKIML WDP+GK GP  PLPD V+I  PKDE
Sbjct:  126 IMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE 216          
BLAST of CN181961 vs. ExPASy Swiss-Prot
Match: RS31_XENLA (40S ribosomal protein S3-A OS=Xenopus laevis GN=rps3-A PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 3.655e-31
Identity = 66/91 (72.53%), Postives = 72/91 (79.12%), Query Frame = -3
Query:  290 IMESGAKGCEVIFRGKLGAQRAKSMKFKEGYMVFSGQPGNEYIDFAVRHVFLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDE 562
            IMESGAKGCEV+  GKL  QRAKSMKF +G M+ SG P N Y+D AVRHV LRQGVLGIKVKIML WDP+GK GP  PLPD V+I  PKDE
Sbjct:  126 IMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE 216          
BLAST of CN181961 vs. ExPASy Swiss-Prot
Match: RS3_PONAB (40S ribosomal protein S3 OS=Pongo abelii GN=RPS3 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.774e-31
Identity = 66/91 (72.53%), Postives = 71/91 (78.02%), Query Frame = -3
Query:  290 IMESGAKGCEVIFRGKLGAQRAKSMKFKEGYMVFSGQPGNEYIDFAVRHVFLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDE 562
            IMESGAKGCEV+  GKL  QRAKSMKF +G M+ SG P N Y+D AVRHV LRQGVLGIKVKIML WDP GK GP  PLPD V+I  PKDE
Sbjct:  126 IMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDE 216          
BLAST of CN181961 vs. ExPASy Swiss-Prot
Match: RS3_PIG (40S ribosomal protein S3 OS=Sus scrofa GN=RPS3 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.774e-31
Identity = 66/91 (72.53%), Postives = 71/91 (78.02%), Query Frame = -3
Query:  290 IMESGAKGCEVIFRGKLGAQRAKSMKFKEGYMVFSGQPGNEYIDFAVRHVFLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDE 562
            IMESGAKGCEV+  GKL  QRAKSMKF +G M+ SG P N Y+D AVRHV LRQGVLGIKVKIML WDP GK GP  PLPD V+I  PKDE
Sbjct:  126 IMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDE 216          
BLAST of CN181961 vs. ExPASy Swiss-Prot
Match: RS3_HUMAN (40S ribosomal protein S3 OS=Homo sapiens GN=RPS3 PE=1 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 4.774e-31
Identity = 66/91 (72.53%), Postives = 71/91 (78.02%), Query Frame = -3
Query:  290 IMESGAKGCEVIFRGKLGAQRAKSMKFKEGYMVFSGQPGNEYIDFAVRHVFLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDE 562
            IMESGAKGCEV+  GKL  QRAKSMKF +G M+ SG P N Y+D AVRHV LRQGVLGIKVKIML WDP GK GP  PLPD V+I  PKDE
Sbjct:  126 IMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDE 216          
The following BLAST results are available for this feature:
BLAST of CN181961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
RS33_ARATH1.810e-3873.5340S ribosomal protein S3-3 OS=Arabidopsis thaliana... [more]
RS31_ARATH3.414e-3772.1240S ribosomal protein S3-1 OS=Arabidopsis thaliana... [more]
RS32_ARATH9.932e-3774.2640S ribosomal protein S3-2 OS=Arabidopsis thaliana... [more]
RS3_RAT3.655e-3172.5340S ribosomal protein S3 OS=Rattus norvegicus GN=R... [more]
RS3_MOUSE3.655e-3172.5340S ribosomal protein S3 OS=Mus musculus GN=Rps3 P... [more]
RS32_XENLA3.655e-3172.5340S ribosomal protein S3-B OS=Xenopus laevis GN=rp... [more]
RS31_XENLA3.655e-3172.5340S ribosomal protein S3-A OS=Xenopus laevis GN=rp... [more]
RS3_PONAB4.774e-3172.5340S ribosomal protein S3 OS=Pongo abelii GN=RPS3 P... [more]
RS3_PIG4.774e-3172.5340S ribosomal protein S3 OS=Sus scrofa GN=RPS3 PE=... [more]
RS3_HUMAN4.774e-3172.5340S ribosomal protein S3 OS=Homo sapiens GN=RPS3 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001L19_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001L19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181961 ID=CN181961; Name=CN181961; organism=Citrus sinensis; type=EST; length=564bp
TTACAGCTCTACCCTTTAAAATACCAAAAAAACAATGGGCAACCGATTAA
ACAAGAAAATTGGTTGATAATTATGAAATCTTTAACAATACTGATGACTA
CCGTATATCAAAATTAACCCCATGGAGTCTGAGGTATCCTTCATTAGCAA
CAAAAATGAAAACTAAAGCACTTCCAATACCATTGATAAAATATCAAAAA
AGATGAAACTATACCCCCCTTCGGCCTTAAGCCCCTTGGATTGGGACCCC
AATATCAGTAGCCACCAATGTTGGCTTGACATACTCCTCTTCATCCTTGG
GGGAGTGGATTGTTACCAAATCCGGTAAAGGGGTAGTAGGACCTTGCTTT
CCATTAGGATCCCAACTAAGCATGATCTTGACCTTAATACCAAGTACACC
CTGTCTCAAAAAAACATGTCTCACAGCAAAGTCAATATATTCATTCCCTG
GCTGACCCGAAAAAACCATATATCCCTCCTTAAACTTCATTGATTTTGCA
CGTTGGGCCCCCAACTTTCCCCTGAAAATGACCTCACATCCCTTGGCTCC
ACTTTCCATAATGA
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