CN181953

Overview
NameCN181953
Unique NameCN181953
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN181953_ssr36 microsatellite CN181953_ssr36:36..47. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8490 contig Csv1_Contig8490:229..904. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181953 vs. ExPASy Swiss-Prot
Match: PR1A1_ARATH (PRA1 family protein A1 OS=Arabidopsis thaliana GN=PRA1A1 PE=2 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 4.403e-77
Identity = 127/175 (72.57%), Postives = 140/175 (80.00%), Query Frame = 2
Query:   68 MDWGNVTAEDLIDALREVDWSSPPRPLSEFFSRFTVPRSSAKWNSRLKCNLYYYRTNYFIMITVILGLGFLRRPVXXXXXXXXXXXXXFLNDSFAGTFNEKVTRTVRQFSPHLAAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWALAVGLL 592
            MDWGNVT +DL DALREVDWSSPPRP SEFFSRFTVP+S  KW+SRLKCNLYYYRTNYFIMI VILGLG L RP+             FLNDSFAG+F+EK TRTVR+FSP LAAKMRPPLTPV RGRPS+KRAI++CG+PRWVFVL  S VSF LWY+S GLL V  AL +  L
Sbjct:    1 MDWGNVTVDDLFDALREVDWSSPPRPPSEFFSRFTVPKSVPKWDSRLKCNLYYYRTNYFIMIVVILGLGVLTRPLAIFAALLTALSLAFLNDSFAGSFSEKATRTVRRFSPQLAAKMRPPLTPVTRGRPSSKRAIHVCGQPRWVFVLTCSLVSFALWYISSGLLRVSVALLIAHL 175          

HSP 2 Score: 40.4318 bits (93), Expect = 4.403e-77
Identity = 17/18 (94.44%), Postives = 17/18 (94.44%), Query Frame = 1
Query:  625 PNLKARLNTFREEFRAVW 678
            PNLKAR NTFREEFRAVW
Sbjct:  186 PNLKARFNTFREEFRAVW 203          

HSP 3 Score: 28.8758 bits (63), Expect = 4.403e-77
Identity = 13/21 (61.90%), Postives = 16/21 (76.19%), Query Frame = 3
Query:  576 LLLDFFATILHASFRTPQLES 638
            LL+   ATILHAS RTP L++
Sbjct:  170 LLIAHLATILHASLRTPNLKA 190          
BLAST of CN181953 vs. ExPASy Swiss-Prot
Match: PR1A3_ARATH (PRA1 family protein A3 OS=Arabidopsis thaliana GN=PRA1A3 PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 4.678e-66
Identity = 108/175 (61.71%), Postives = 130/175 (74.29%), Query Frame = 2
Query:   68 MDWGNVTAEDLIDALREVDWSSPPRPLSEFFSRFTVPRSSAKWNSRLKCNLYYYRTNYFIMITVILGLGFLRRPVXXXXXXXXXXXXXFLNDSFAGTFNEKVTRTVRQFSPHLAAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWALAVGLL 592
            MDW +V AED+I+ALREV+WS+ PR L+EFFSRF  PRS +KW SRLKCNLYYYRTNYFI+   +LGL  + RP+             FLNDSFA TFNEK+ RT+R FSPHLAAKMRPP  PVIRGR + ++ +YICG+PR VFVL+    SF+LW+ SCGLL VL+AL   LL
Sbjct:    1 MDWDSVAAEDVIEALREVEWSASPRSLAEFFSRFAFPRSFSKWMSRLKCNLYYYRTNYFILFVFVLGLALITRPLAILGAALTALSLAFLNDSFAATFNEKMIRTIRHFSPHLAAKMRPPHMPVIRGRSATRKTVYICGQPRLVFVLLGLTASFVLWFTSCGLLWVLYALTTALL 175          

HSP 2 Score: 41.9726 bits (97), Expect = 4.678e-66
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = 1
Query:  625 PNLKARLNTFREEFRAVW 678
            PNLKARLNTFREEFRAVW
Sbjct:  186 PNLKARLNTFREEFRAVW 203          
BLAST of CN181953 vs. ExPASy Swiss-Prot
Match: PR1A2_ARATH (PRA1 family protein A2 OS=Arabidopsis thaliana GN=PRA1A2 PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 4.870e-61
Identity = 105/174 (60.34%), Postives = 129/174 (74.14%), Query Frame = 2
Query:   68 MDWGNVTAEDLIDALREVDWSSPPRPLSEFFSRFTVPRSSAKWNSRLKCNLYYYRTNYFIMITVILGLGFLRRPVXXXXXXXXXXXXXFLNDSFAGTFNEKVTRTVRQFSPHLAAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWALAVGL 589
            MDW NV AED+I+ALREV+WS+PPR   EFFSRF  PRS +KW SRLKCNLYYYRTNYFI++  +LGL  + RP+             FLNDSFA +FNEK  RT+R FSPH+AAKMRPP  PVIRGR +A++ +Y+CG+PRWVFV+ F   S ++W+ SCGLL VL+AL   L
Sbjct:    1 MDWDNVAAEDVIEALREVEWSTPPRSFGEFFSRFAFPRSFSKWKSRLKCNLYYYRTNYFILVIFVLGLALVTRPLALVGAALTALSIAFLNDSFAASFNEKFIRTIRHFSPHMAAKMRPPHMPVIRGRSTARKTVYVCGKPRWVFVITFLTASLVMWFSSCGLLWVLYALLTSL 174          
The following BLAST results are available for this feature:
BLAST of CN181953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PR1A1_ARATH4.403e-7772.57PRA1 family protein A1 OS=Arabidopsis thaliana GN=... [more]
PR1A3_ARATH4.678e-6661.71PRA1 family protein A3 OS=Arabidopsis thaliana GN=... [more]
PR1A2_ARATH4.870e-6160.34PRA1 family protein A2 OS=Arabidopsis thaliana GN=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001L13_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001L13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181953 ID=CN181953; Name=CN181953; organism=Citrus sinensis; type=EST; length=678bp
GATCGTTTTCTAGGGTTTCGGAAGAGCGGAATATTATAATAATAATAACA
ATAGTAGTAATCAAGCGATGGATTGGGGAAACGTAACAGCAGAAGATCTT
ATCGACGCGCTTCGTGAAGTTGACTGGTCGTCTCCACCGCGTCCTCTCTC
CGAGTTCTTCTCCAGGTTCACCGTTCCGAGATCCTCCGCCAAATGGAACA
GCCGATTGAAATGCAATCTTTACTACTACCGAACAAACTACTTTATCATG
ATTACTGTCATTCTTGGGTTGGGTTTCCTAAGGAGACCTGTTGCTATTAT
TGCTGCTCTTTTGACAGCCCTTAGTATTGCATTTCTCAATGACAGCTTTG
CAGGTACTTTCAATGAGAAGGTGACAAGAACTGTGAGGCAATTTTCTCCA
CATCTAGCTGCAAAGATGAGGCCTCCTCTTACACCTGTTATTCGTGGGCG
CCCATCAGCGAAAAGAGCAATCTATATATGTGGTCGGCCTCGTTGGGTGT
TTGTCTTAATATTTTCTTGCGTAAGTTTCATCCTTTGGTATGTTTCCTGT
GGTCTTTTGACTGTTCTATGGGCACTTGCTGTTGGACTTCTTTGCCACTA
TCCTTCATGCAAGTTTTCGAACTCCCCAACTTGAAAGCACGTCTGAATAC
ATTCAGAGAGGAATTCCGTGCTGTTTGG
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