CN181941

Overview
NameCN181941
Unique NameCN181941
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181941 vs. ExPASy Swiss-Prot
Match: CAF1B_HUMAN (Chromatin assembly factor 1 subunit B OS=Homo sapiens GN=CHAF1B PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.109e-28
Identity = 59/129 (45.74%), Postives = 84/129 (65.12%), Query Frame = 1
Query:   19 ISSTSESINSAYLFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSTG--FFKLPYRLVFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSKNARYLALSSQDGYCTLVEFENDELGMPI 399
            + S    +N+ Y+FSRK+L RP   LP   K  +AVR CP+ F LR    TG     LPYRLVFA+A+ +S+ +YDT+   P   ++ +HY  ++DI+WS +  +LA+SS DGYC+ V FE DELG+P+
Sbjct:  256 VESGENVMNTTYVFSRKNLKRPIAHLPCPGKATLAVRCCPVYFELRPVVETGVELMSLPYRLVFAVASEDSVLLYDTQQSFPFGYVSNIHYHTLSDISWSSDGAFLAISSTDGYCSFVTFEKDELGIPL 384          
BLAST of CN181941 vs. ExPASy Swiss-Prot
Match: CAF1B_CHICK (Chromatin assembly factor 1 subunit B OS=Gallus gallus GN=CHAF1B PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.306e-26
Identity = 58/136 (42.65%), Postives = 83/136 (61.03%), Query Frame = 1
Query:   19 ISSTSESINSAYLFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRES---------NSTGFFKLPYRLVFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSKNARYLALSSQDGYCTLVEFENDELGMPI 399
            + S     N+ Y+FSR +L RP   LP   K  +AVR CP+ F LR++         +S     LPYRLVFA+A+ +S+  YDTE   P   ++ +HY  ++DI+WS +  +LA+SS DGYC+ V FE DELG+P+
Sbjct:  256 VESGENVTNTTYVFSRNNLKRPMGHLPCPGKATLAVRCCPVYFELRQALNKGEVSQKSSPALLNLPYRLVFAVASEDSVLFYDTEQSFPFGYVSNIHYHTLSDISWSSDGAFLAISSTDGYCSFVTFEKDELGIPL 391          
BLAST of CN181941 vs. ExPASy Swiss-Prot
Match: CAF1B_MOUSE (Chromatin assembly factor 1 subunit B OS=Mus musculus GN=Chaf1b PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.483e-26
Identity = 57/128 (44.53%), Postives = 79/128 (61.72%), Query Frame = 1
Query:   43 NSAYLFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLR---------ESNSTGFFKLPYRLVFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSKNARYLALSSQDGYCTLVEFENDELGMPI 399
            N+ Y+FSRK L RP   LP   K  +AVR CP+ F LR         E  S     LPYR+VFA+A+ +S+ +YDT+   P   ++ +HY  ++DI+WS +  +LA+SS DGYCT V FE  ELG+P+
Sbjct:  264 NTTYVFSRKHLKRPIAHLPCPGKATLAVRCCPVYFELRPVAETEKASEEPSPELVNLPYRMVFAVASEDSVLLYDTQQSFPFGYVSNIHYHTLSDISWSSDGAFLAISSTDGYCTFVTFEKGELGIPL 391          
BLAST of CN181941 vs. ExPASy Swiss-Prot
Match: YEG3_SCHPO (Uncharacterized WD repeat-containing protein C26H5.03 OS=Schizosaccharomyces pombe GN=SPAC26H5.03 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.144e-22
Identity = 55/145 (37.93%), Postives = 90/145 (62.07%), Query Frame = 1
Query:   46 SAYLFSRKDLSR-PALQLPGASKPVVAVRFCPLAFNLRESNSTGF----FKLPYRLVFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSKNARYLALSSQDGYCTLVEFENDELGMPISLSGNKVSKDENKSPLLTKSED 465
            +AY+++R  +++ P   L G  KPV+AVRF P+ + L   ++  F    F LPYR+VFA+A  +++YIYDT++  P      LHY+ +TDIAW+ +   L ++S DG+C+++ FE  ELG+    S +K+S  E +S   +  +D
Sbjct:  335 TAYIYTRGSITKQPVACLNGFKKPVIAVRFSPIHYELNSFSNFSFTSVSFNLPYRMVFAVACQDAVYIYDTQTCKPFYRAVNLHYSNLTDIAWNDDGNVLLMTSIDGFCSVITFEPGELGVK---SQHKISLPEKRSASPSSIDD 476          
BLAST of CN181941 vs. ExPASy Swiss-Prot
Match: CAC2_YEAST (Chromatin assembly factor 1 subunit p60 OS=Saccharomyces cerevisiae GN=CAC2 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.399e-20
Identity = 47/134 (35.07%), Postives = 80/134 (59.70%), Query Frame = 1
Query:    4 AGSYKISSTSESINSAYLFSRKDL--------SRPALQLPGASKPVVAVRFCPLAFNLRESNSTGFFKLPYRLVFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSKNARYLALSSQDGYCTLVEFEND 381
            +G YK++   E  N  Y+++R  +        +RPA+++P   KP +   F P+ +   E+      KLPY+LVFAIAT N + +YDT+ + P+ ++  +HY+ ITD+AWS++   L +SS DG+C+ V  + +
Sbjct:  276 SGVYKVAG-DEVANCVYVYTRSGILNSAGGVKNRPAIRIPSLKKPALMAAFSPVFY---ETCQKSVLKLPYKLVFAIATTNEVLVYDTDVLEPLCVVGNIHYSPITDLAWSEDGSTLLISSTDGFCSYVSIDTE 405          
The following BLAST results are available for this feature:
BLAST of CN181941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CAF1B_HUMAN3.109e-2845.74Chromatin assembly factor 1 subunit B OS=Homo sapi... [more]
CAF1B_CHICK1.306e-2642.65Chromatin assembly factor 1 subunit B OS=Gallus ga... [more]
CAF1B_MOUSE6.483e-2644.53Chromatin assembly factor 1 subunit B OS=Mus muscu... [more]
YEG3_SCHPO1.144e-2237.93Uncharacterized WD repeat-containing protein C26H5... [more]
CAC2_YEAST1.399e-2035.07Chromatin assembly factor 1 subunit p60 OS=Sacchar... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001L07_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001L07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181941 ID=CN181941; Name=CN181941; organism=Citrus sinensis; type=EST; length=582bp
GAGGCAGGTTCTTACAAAATTTCCTCCACGTCTGAATCAATTAATTCAGC
TTACTTATTTTCCAGAAAGGATCTTTCAAGGCCTGCTTTGCAGCTCCCAG
GTGCTAGCAAACCTGTTGTAGCAGTTCGTTTCTGTCCTCTGGCTTTTAAT
CTTCGGGAATCAAACTCAACTGGCTTCTTCAAGCTACCTTACCGCCTCGT
CTTTGCCATTGCAACTCTAAATTCATTATACATCTATGACACAGAGAGTG
TTCCACCCATAGCAATCTTGGCTGGCCTCCACTATGCAGCCATAACTGAC
ATTGCATGGTCAAAGAATGCTCGTTATTTAGCTTTATCCTCTCAAGATGG
TTACTGTACCTTAGTAGAATTTGAAAATGATGAACTTGGAATGCCTATCT
CCTTGTCAGGAAATAAAGTCAGTAAGGATGAGAACAAGAGCCCTCTTCTA
ACGAAATCAGAGGACATGATAATTGAGGCAAGTACTAATGATAAATTAGT
TACAGCAGAGACGAAAGAAGCAGACAAGAGGAAAACAGAAGCAGAAACAA
AAGACAATAACACTGCAATTAATGGTTCTATT
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