CN181937

Overview
NameCN181937
Unique NameCN181937
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12956 contig Csv1_Contig12956:905..1502. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181937 vs. ExPASy Swiss-Prot
Match: JMT_ARATH (Jasmonate O-methyltransferase OS=Arabidopsis thaliana GN=JMT PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.510e-33
Identity = 84/180 (46.67%), Postives = 109/180 (60.56%), Query Frame = 3
Query:   42 SCFIAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRVP-RELVSE---CGIPLLNKRDVCVAKTCSPSSVHKAYLDQFEIDFTSFLKFRSEELKTEGRMVLNFIGNDKYHTGV------FELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIEREGSFNIHQLETSHISWSVG 551
            SCF++A PGSF+GRLFP   L+ V+SS  LHWLS+VP RE   E       L N   + ++KT SP S HKAY  QF+ DF  FL+ RSEEL   GRMVL+F+G              +EL+   L  M  EG+IE  K+++F+ P Y    EE++ VIE+EGSF+I +LE S I W  G
Sbjct:  133 SCFVSAVPGSFYGRLFPRRSLHFVHSSSSLHWLSQVPCREAEKEDRTITADLENMGKIYISKT-SPKSAHKAYALQFQTDFLVFLRSRSEELVPGGRMVLSFLGRRSLDPTTEESCYQWELLAQALMSMAKEGIIEEEKIDAFNAPYYAASSEELKMVIEKEGSFSIDRLEISPIDWEGG 311          
BLAST of CN181937 vs. ExPASy Swiss-Prot
Match: BAMT_ANTMA (Benzoate carboxyl methyltransferase OS=Antirrhinum majus GN=BAMT PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.395e-33
Identity = 75/174 (43.10%), Postives = 104/174 (59.77%), Query Frame = 3
Query:   39 GSCFIAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRVPRELVSECGIPLLNKRDVCVAKTCSPSSVHKAYLDQFEIDFTSFLKFRSEELKTEGRMVLNFIG------NDKYHTGVFELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIEREGSFNIHQLETSHISW 542
            G+CF+   PGSF+GRL P   L+  YSS+ +HWLS+VP  L         N++++ +A T SP  V+KAY  Q+E DF++FLK R EE+   GRMVL F G      + K    +F L+   L DMV EGL+++  L SF+ P+Y+PC  EV   I  EGSF + +LE   + W
Sbjct:  119 GNCFVYGLPGSFYGRLLPKKSLHFAYSSYSIHWLSQVPEGLEDN------NRQNIYMA-TESPPEVYKAYAKQYERDFSTFLKLRGEEIVPGGRMVLTFNGRSVEDPSSKDDLAIFTLLAKTLVDMVAEGLVKMDDLYSFNIPIYSPCTREVEAAILSEGSFTLDRLEVFRVCW 285          
BLAST of CN181937 vs. ExPASy Swiss-Prot
Match: JMT_BRARP (Jasmonate O-methyltransferase OS=Brassica rapa subsp. pekinensis GN=JMT PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.848e-32
Identity = 79/186 (42.47%), Postives = 111/186 (59.68%), Query Frame = 3
Query:   27 HDDFGSCFIAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRVP-RELVSECGI----PLLNKRDVCVAKTCSPSSVHKAYLDQFEIDFTSFLKFRSEELKTEGRMVLNFIGNDKYHTGV------FELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIEREGSFNIHQLETSHISWSVG 551
            H   G CF++A PGSF+GRLFP   L+ V+SS  LHWLS+VP  E+  + G+     L N+  + ++KT SP S HK Y  QF+ DF+ FL+ RSEEL   GRMVL+F+G              +EL+   L  +  EG+IE   +++F+ P Y    EE++  IE+EGSF+I +LE S + W  G
Sbjct:  131 HGSGGPCFVSAVPGSFYGRLFPRRSLHFVHSSSSLHWLSQVPCGEVNKKDGVVITADLDNRGKIYLSKT-SPKSAHKVYALQFQTDFSVFLRSRSEELVPGGRMVLSFLGRSSPDPTTEESCYQWELLAQALMSLAKEGIIEEENIDAFNAPYYAASPEELKMAIEKEGSFSIDRLEISPVDWEGG 315          
BLAST of CN181937 vs. ExPASy Swiss-Prot
Match: MT797_ARATH (Probable S-adenosylmethionine-dependent methyltransferase At5g37970 OS=Arabidopsis thaliana GN=At5g37970 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.588e-17
Identity = 61/168 (36.31%), Postives = 88/168 (52.38%), Query Frame = 3
Query:   48 FIAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRVPRELVSECGIPLLNKRDVCVAKTCS--PSSVHKAYLDQFEIDFTSFLKFRSEELKTEGRMVLNF----IGNDKYHTG---VFELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIEREGSFNIHQLE 524
            F    PGSFHGR+ P   L++ ++S+ LHWLS VP+  V +   P LNK  +     C+     V KAY  QF  DF  FL+ R+EEL + G M+L+      G  K  T    V +++G  L D+   G+    K+E F  P Y P + E +  IE+  +FN+  +E
Sbjct:  129 FSVGVPGSFHGRVLPKNSLHIGHTSYTLHWLSNVPQH-VCDKKSPALNKSYI----QCNNLVDEVTKAYKIQFRKDFGGFLEARAEELVSGGLMILSGQCLPDGIPKALTWQGVVIDMIGDCLMDLAKLGITSKEKIELFSLPTYIPHISEFKANIEQNENFNVETME 291          
BLAST of CN181937 vs. ExPASy Swiss-Prot
Match: MT799_ARATH (Probable S-adenosylmethionine-dependent methyltransferase At5g37990 OS=Arabidopsis thaliana GN=At5g37990 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 6.375e-16
Identity = 59/163 (36.20%), Postives = 87/163 (53.37%), Query Frame = 3
Query:   63 PGSFHGRLFPPCFLNLVYSSFCLHWLSRVPRELVSECGIPLLNKRDVCVAKTCS--PSSVHKAYLDQFEIDFTSFLKFRSEELKTEGRMVLNF----IGNDKYHTG---VFELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIEREGSFNIHQLE 524
            PGSFHGR+ P   L++ + ++ LHWLS VP+  V +   P LNK  +     C+     V +AY  QF+ D   FL  R+EEL + G M+L+      G  K  T    V +++G  L DM  +G+    K+E F  P+Y P + E +  IER  +F+I  +E
Sbjct:  134 PGSFHGRVLPKNSLHIGHITYALHWLSTVPQH-VCDKKSPALNKSYI----QCNNLVEEVTEAYRVQFKKDMGDFLGARAEELVSGGLMILSGQCLPDGVPKALTWQGVVIDMIGDCLMDMAKQGITTKEKIELFSLPIYIPHISEFKAEIERNENFSIETME 291          
BLAST of CN181937 vs. ExPASy Swiss-Prot
Match: MT878_ARATH (Probable S-adenosylmethionine-dependent methyltransferase At5g38780 OS=Arabidopsis thaliana GN=At5g38780 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.202e-14
Identity = 62/180 (34.44%), Postives = 87/180 (48.33%), Query Frame = 3
Query:   48 FIAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRVPRELVSECGIPLLNKRDVCVAKTCSPSSVHKAYLDQFEIDFTSFLKFRSEELKTEGRMVLNF----IGNDKYHTG---VFELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIEREGSFNIHQLE-TSHISWSVGYENN 563
            F    PGSF+GR+ P   +++  +SF  HWLS+VP E+  +  +   NK  +          V +AY  QFE D   FLK R+EEL   G M+        G   Y T    V + +G  L DM   G+    K+E F+ P+Y P V E++  IE+   F I  +E  SH   +V   NN
Sbjct:  128 FSVGVPGSFYGRVLPRNSIHIGNTSFTTHWLSKVPEEVCDKNSL-AWNKNYIHCNNLI--EEVTEAYKVQFEKDMGVFLKARAEELVPGGLMITLGQCLPDGVAMYETWSGIVKDTIGDCLQDMATLGVTTEEKIEMFNLPVYFPQVSELKGAIEQNIRFTIEMMEIVSHPLEAVQLSNN 304          
BLAST of CN181937 vs. ExPASy Swiss-Prot
Match: MT810_ARATH (Probable S-adenosylmethionine-dependent methyltransferase At5g38100 OS=Arabidopsis thaliana GN=At5g38100 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.498e-14
Identity = 54/170 (31.76%), Postives = 83/170 (48.82%), Query Frame = 3
Query:   48 FIAAAPGSFHGRLFPPCFLNLVYSSFCLHWLSRVPRELVSECGIPLLNKRDVCVAKTCSPSSVHKAYLDQFEIDFTSFLKFRSEELKTEGRMVLNFIGN---------DKYHTGVFELMGMVLNDMVYEGLIEVSKLESFHFPMYNPCVEEVRQVIEREGSFNIHQLETS 530
            F    PGSF+GR+ P   +++ ++S+  HWLS+VP  +  +  +   NK  +          V KAY  QF  D   FL  R+EEL   G M++  IG          + +   V + +G  L DM   G+    K++ F  P+Y P   E++  IE+ GSF I  +ET+
Sbjct:  126 FSVGVPGSFYGRVLPRNSIHIGHTSYTTHWLSKVPDNVCDKKSMAW-NKNYIQCNNLLE--EVTKAYKVQFIKDMEIFLDARAEELVPGGLMIV--IGECLPDGVSLYETWQGYVMDTIGDCLMDMAKSGITSEEKIDLFSLPVYFPQFSELKGEIEKNGSFTIELMETT 290          
The following BLAST results are available for this feature:
BLAST of CN181937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
JMT_ARATH1.510e-3346.67Jasmonate O-methyltransferase OS=Arabidopsis thali... [more]
BAMT_ANTMA4.395e-3343.10Benzoate carboxyl methyltransferase OS=Antirrhinum... [more]
JMT_BRARP2.848e-3242.47Jasmonate O-methyltransferase OS=Brassica rapa sub... [more]
MT797_ARATH2.588e-1736.31Probable S-adenosylmethionine-dependent methyltran... [more]
MT799_ARATH6.375e-1636.20Probable S-adenosylmethionine-dependent methyltran... [more]
MT878_ARATH1.202e-1434.44Probable S-adenosylmethionine-dependent methyltran... [more]
MT810_ARATH3.498e-1431.76Probable S-adenosylmethionine-dependent methyltran... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001L05_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001L05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181937 ID=CN181937; Name=CN181937; organism=Citrus sinensis; type=EST; length=598bp
GAGGGAGATTGAAGACAGAGAGGGGCCATGACGATTTTGGTTCATGTTTC
ATTGCTGCAGCCCCTGGATCTTTCCATGGAAGGCTATTTCCTCCGTGTTT
CCTAAACTTGGTTTACTCTTCTTTCTGTCTTCACTGGCTCTCTCGGGTGC
CCAGAGAGCTAGTAAGTGAATGTGGAATTCCTTTATTAAATAAAAGGGAT
GTCTGCGTAGCAAAAACCTGTAGCCCTTCCAGTGTGCATAAAGCATACTT
GGATCAATTTGAGATTGATTTCACATCATTTCTCAAATTTCGATCGGAAG
AGTTAAAAACTGAAGGCCGTATGGTTCTTAACTTTATAGGTAATGATAAA
TACCATACTGGTGTTTTCGAGTTGATGGGAATGGTGTTAAATGACATGGT
CTATGAGGGTTTGATTGAAGTATCAAAATTGGAGTCATTTCATTTTCCGA
TGTATAACCCTTGTGTTGAAGAAGTAAGACAAGTAATTGAAAGAGAAGGA
TCCTTTAACATCCATCAGCTTGAAACATCGCATATAAGTTGGTCAGTAGG
CTATGAGAACAATAACAAAGGCTTGGAGTTAAACGCGCACGCAAGAGC
back to top