CX675883

Overview
NameCX675883
Unique NameCX675883
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length669
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675883 vs. ExPASy Swiss-Prot
Match: COB21_ORYSJ (Coatomer subunit beta'-1 OS=Oryza sativa subsp. japonica GN=Os06g0143900 PE=2 SV=1)

HSP 1 Score: 393.66 bits (1010), Expect = 4.716e-109
Identity = 185/216 (85.65%), Postives = 203/216 (93.98%), Query Frame = 1
Query:    1 VWSSDGEYAVREXXXXXXXXXXNFQEKRSVRPTFSAERIYGGTLLAMCSNDFICFYDWAECRLIRRIDVTVKNLYWADSGDLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEIL 648
            VWSS+GEYA+RE          +FQEK+++RPTFSAERI+GG LLAMCS+DFICFYDWA+CRLIRRIDV VKNLYWADSGDLVAIASDTSFYILKYNRDVV++YL+SGKPVDE+GVEDAFELLHE NERVRTG+WVGDCFIYNNSSWRLNYCVGGEVTTM+HLDRPMYLLGYLA+QSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGD+ERAN+IL
Sbjct:  396 VWSSEGEYAIRESTSRIKIFSKSFQEKKTIRPTFSAERIFGGILLAMCSSDFICFYDWADCRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYNRDVVASYLESGKPVDEEGVEDAFELLHEVNERVRTGIWVGDCFIYNNSSWRLNYCVGGEVTTMYHLDRPMYLLGYLANQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDIERANDIL 611          
BLAST of CX675883 vs. ExPASy Swiss-Prot
Match: COB21_ARATH (Coatomer subunit beta'-1 OS=Arabidopsis thaliana GN=At1g79990 PE=2 SV=2)

HSP 1 Score: 387.882 bits (995), Expect = 2.588e-107
Identity = 183/216 (84.72%), Postives = 200/216 (92.59%), Query Frame = 1
Query:    1 VWSSDGEYAVREXXXXXXXXXXNFQEKRSVRPTFSAERIYGGTLLAMCSNDFICFYDWAECRLIRRIDVTVKNLYWADSGDLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEIL 648
            VWSSDGE+AVRE          NFQEK++VRPTFSAE I+GGTLL MCS+DFICFYDWAECRLIRRIDVTVKNLYWADSGDLVAIASDTSFYILK+NRD+VS+Y D GK +DE+G+EDAFELL+ETNERVRTGLWVGDCFIY NSSWRLNYCVGGEVTTM+HLDRPMYLLGYLA+QSRVYLIDKEFNV+GYTLLLSLIEYKTLVMRGDLE+ANE+L
Sbjct:  395 VWSSDGEHAVRESSTKIKIFSKNFQEKKTVRPTFSAEHIFGGTLLTMCSSDFICFYDWAECRLIRRIDVTVKNLYWADSGDLVAIASDTSFYILKFNRDIVSSYFDGGKQIDEEGIEDAFELLNETNERVRTGLWVGDCFIYTNSSWRLNYCVGGEVTTMYHLDRPMYLLGYLANQSRVYLIDKEFNVIGYTLLLSLIEYKTLVMRGDLEQANEVL 610          
BLAST of CX675883 vs. ExPASy Swiss-Prot
Match: COB23_ARATH (Coatomer subunit beta'-3 OS=Arabidopsis thaliana GN=At3g15980 PE=2 SV=1)

HSP 1 Score: 380.563 bits (976), Expect = 4.132e-105
Identity = 176/216 (81.48%), Postives = 202/216 (93.52%), Query Frame = 1
Query:    1 VWSSDGEYAVREXXXXXXXXXXNFQEKRSVRPTFSAERIYGGTLLAMCSNDFICFYDWAECRLIRRIDVTVKNLYWADSGDLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEIL 648
            VWSS+GE AVRE          NFQE++S+RPTFSAE+I+GGTLLAMCSNDFICFYDWAECRLI++IDVTVKNLYWA+SGDLVAIASDTSFYILKYNR++VS++ DSG+P DE+GVEDAFE+LHE +ERVRTG+WVGDCFIYNNSSW+LNYCVGGEVTTM+HLDRPMYLLGY+A+QSRVYL+DKEFNV+GYTLLLSLIEYKTLVMRGDL+RAN+IL
Sbjct:  396 VWSSEGECAVRESSSKIKIFSKNFQERKSIRPTFSAEKIFGGTLLAMCSNDFICFYDWAECRLIQQIDVTVKNLYWAESGDLVAIASDTSFYILKYNRELVSSHFDSGRPTDEEGVEDAFEVLHENDERVRTGIWVGDCFIYNNSSWKLNYCVGGEVTTMYHLDRPMYLLGYIANQSRVYLVDKEFNVIGYTLLLSLIEYKTLVMRGDLDRANQIL 611          
BLAST of CX675883 vs. ExPASy Swiss-Prot
Match: COB22_ARATH (Coatomer subunit beta'-2 OS=Arabidopsis thaliana GN=At1g52360 PE=2 SV=1)

HSP 1 Score: 379.793 bits (974), Expect = 7.048e-105
Identity = 177/216 (81.94%), Postives = 202/216 (93.52%), Query Frame = 1
Query:    1 VWSSDGEYAVREXXXXXXXXXXNFQEKRSVRPTFSAERIYGGTLLAMCSNDFICFYDWAECRLIRRIDVTVKNLYWADSGDLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEIL 648
            VWSS+GE AVRE          NFQEKRS+RPTFSAE+I+GGTLLAMCS+DFICFYDWAECRLI+RIDVTVKNLYWADSGDLVAIASDTSFYILK+NRD+V+++ DSG+P +E+GVEDAFE+LHE +ERVRTG+WVGDCFIYNNSSW+LNYCVGGEVTTM+HLDRPMYLLGYLASQSRV+L+DKEFNV+GYTLLLSLIEYKTLVMRGDL++A+EIL
Sbjct:  396 VWSSEGECAVRESSSKIKIFSKNFQEKRSIRPTFSAEKIFGGTLLAMCSSDFICFYDWAECRLIQRIDVTVKNLYWADSGDLVAIASDTSFYILKFNRDLVTSHFDSGRPTEEEGVEDAFEVLHENDERVRTGIWVGDCFIYNNSSWKLNYCVGGEVTTMYHLDRPMYLLGYLASQSRVFLVDKEFNVIGYTLLLSLIEYKTLVMRGDLDKASEIL 611          
BLAST of CX675883 vs. ExPASy Swiss-Prot
Match: COB23_ORYSJ (Putative coatomer subunit beta'-3 OS=Oryza sativa subsp. japonica GN=Os02g0209000 PE=3 SV=2)

HSP 1 Score: 360.147 bits (923), Expect = 5.779e-99
Identity = 172/216 (79.63%), Postives = 191/216 (88.43%), Query Frame = 1
Query:    1 VWSSDGEYAVREXXXXXXXXXXNFQEKRSVRPTFSAERIYGGTLLAMCSNDFICFYDWAECRLIRRIDVTVKNLYWADSGDLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEIL 648
            VWS DGEYAVRE          NFQE++S+RP FSAERI+GG LLAMC+NDFICF+DWAE R+IRRIDV VKNLYWADSGDLV IASDTSFYILKYNRDVVS++LD G  V E+GVEDAFELLHE NER+RTGLWVGDCFIYNNSS RLNYCVGGEVTT+FHLDR MYLLGYLA+QSRVYLIDK+FNV+GYTLLL++IEYKTLVMRGD +RAN +L
Sbjct:  396 VWSLDGEYAVRESTSRIKIYSKNFQERKSIRPPFSAERIFGGVLLAMCTNDFICFHDWAEGRMIRRIDVNVKNLYWADSGDLVTIASDTSFYILKYNRDVVSSHLDGGGSVGEEGVEDAFELLHEINERIRTGLWVGDCFIYNNSSSRLNYCVGGEVTTLFHLDRQMYLLGYLANQSRVYLIDKQFNVVGYTLLLTMIEYKTLVMRGDFDRANALL 611          
BLAST of CX675883 vs. ExPASy Swiss-Prot
Match: COB22_ORYSJ (Coatomer subunit beta'-2 OS=Oryza sativa subsp. japonica GN=Os02g0209100 PE=2 SV=1)

HSP 1 Score: 360.147 bits (923), Expect = 5.779e-99
Identity = 172/216 (79.63%), Postives = 191/216 (88.43%), Query Frame = 1
Query:    1 VWSSDGEYAVREXXXXXXXXXXNFQEKRSVRPTFSAERIYGGTLLAMCSNDFICFYDWAECRLIRRIDVTVKNLYWADSGDLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEIL 648
            VWS DGEYAVRE          NFQE++S+RP FSAERI+GG LLAMC+NDFICF+DWAE R+IRRIDV VKNLYWADSGDLV IASDTSFYILKYNRDVVS++LD G  V E+GVEDAFELLHE NER+RTGLWVGDCFIYNNSS RLNYCVGGEVTT+FHLDR MYLLGYLA+QSRVYLIDK+FNV+GYTLLL++IEYKTLVMRGD +RAN +L
Sbjct:  396 VWSVDGEYAVRESTSRIKIYSKNFQERKSIRPPFSAERIFGGVLLAMCTNDFICFHDWAEGRMIRRIDVNVKNLYWADSGDLVTIASDTSFYILKYNRDVVSSHLDGGGSVGEEGVEDAFELLHEINERIRTGLWVGDCFIYNNSSSRLNYCVGGEVTTLFHLDRQMYLLGYLANQSRVYLIDKQFNVVGYTLLLTMIEYKTLVMRGDFDRANALL 611          
BLAST of CX675883 vs. ExPASy Swiss-Prot
Match: COPB2_DICDI (Coatomer subunit beta' OS=Dictyostelium discoideum GN=copb2 PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.178e-59
Identity = 110/218 (50.46%), Postives = 154/218 (70.64%), Query Frame = 1
Query:    1 VWSSD-GEYAVREXXXXXXXXXXNFQEKRSVRPTFSAERIYGGTLLAMCSNDFICFYDWAECRLIRRIDVTV-KNLYWADSGDLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEIL 648
            VW+ D G+YAVRE          NF+E  S +P+FSAE I+GG+LL + SND +CFY W    +IRRI+ T  KN++W+++GD +AI +D S +IL+Y +D V  Y++SG+P+ E G+E+AF+++HE  + + TGLWVGDCFIY N S +LNYCVG EV T+ HL++ MYLL YL    R+YL DK  N++ Y L +S+I Y+T ++RGDLE A  IL
Sbjct:  396 VWAEDSGQYAVRESTSRIKIFK-NFKETHSFKPSFSAEGIFGGSLLGVKSNDTLCFYSWDSADIIRRIEKTSPKNIFWSENGDYLAIVTDKSTFILRYYKDTVQKYIESGQPIGELGIENAFDVVHEIEDTIGTGLWVGDCFIYINRSSKLNYCVGTEVVTISHLEKHMYLLKYLPQSGRLYLSDKNLNIVSYKLHISVISYQTSILRGDLEGAERIL 612          
BLAST of CX675883 vs. ExPASy Swiss-Prot
Match: COPB2_RAT (Coatomer subunit beta' OS=Rattus norvegicus GN=Copb2 PE=1 SV=3)

HSP 1 Score: 225.328 bits (573), Expect = 2.222e-58
Identity = 112/216 (51.85%), Postives = 153/216 (70.83%), Query Frame = 1
Query:    4 WSSDG-EYAVREXXXXXXXXXXNFQEKRSVRPTFSAERIYGGTLLAMCSNDFICFYDWAECRLIRRIDVTVKNLYWADSGDLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEIL 648
            W+ D  EYA+RE          NF+EK+S +P F AE IYGG LL + S + + FYDW    LIRRI++  K+++W+DSG+LV IA++ SF+ILKY  + V A  ++ + V E G+EDAFE+L E  E V+TGLWVGDCFIY +S  RLNY VGGE+ T+ HLDR MYLLGY+   +R+YL DKE N++ Y+LL+S++EY+T VMR D   A+++L
Sbjct:  396 WAHDSSEYAIRESNSVVKIFK-NFKEKKSFKPDFGAESIYGGFLLGVRSVNGLAFYDWENTELIRRIEIQPKHIFWSDSGELVCIATEESFFILKYLSEKVLAAQETHEGVTEDGIEDAFEVLGEIQEIVKTGLWVGDCFIYTSSVNRLNYYVGGEIVTIAHLDRTMYLLGYIPKDNRLYLGDKELNIVSYSLLVSVLEYQTAVMRRDFSMADKVL 610          
BLAST of CX675883 vs. ExPASy Swiss-Prot
Match: COPB2_PONAB (Coatomer subunit beta' OS=Pongo abelii GN=COPB2 PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.222e-58
Identity = 112/216 (51.85%), Postives = 153/216 (70.83%), Query Frame = 1
Query:    4 WSSDG-EYAVREXXXXXXXXXXNFQEKRSVRPTFSAERIYGGTLLAMCSNDFICFYDWAECRLIRRIDVTVKNLYWADSGDLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEIL 648
            W+ D  EYA+RE          NF+EK+S +P F AE IYGG LL + S + + FYDW    LIRRI++  K+++W+DSG+LV IA++ SF+ILKY  + V A  ++ + V E G+EDAFE+L E  E V+TGLWVGDCFIY +S  RLNY VGGE+ T+ HLDR MYLLGY+   +R+YL DKE N++ Y+LL+S++EY+T VMR D   A+++L
Sbjct:  396 WAHDSSEYAIRESNSIVKIFK-NFKEKKSFKPDFGAESIYGGFLLGVRSVNGLAFYDWDNTELIRRIEIQPKHIFWSDSGELVCIATEESFFILKYLSEKVLAVQETHEGVTEDGIEDAFEVLGEIQEIVKTGLWVGDCFIYTSSVNRLNYYVGGEIVTIAHLDRTMYLLGYIPKDNRLYLGDKELNIVSYSLLVSVLEYQTAVMRRDFSMADKVL 610          
BLAST of CX675883 vs. ExPASy Swiss-Prot
Match: COPB2_MOUSE (Coatomer subunit beta' OS=Mus musculus GN=Copb2 PE=2 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 2.222e-58
Identity = 112/216 (51.85%), Postives = 153/216 (70.83%), Query Frame = 1
Query:    4 WSSDG-EYAVREXXXXXXXXXXNFQEKRSVRPTFSAERIYGGTLLAMCSNDFICFYDWAECRLIRRIDVTVKNLYWADSGDLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEIL 648
            W+ D  EYA+RE          NF+EK+S +P F AE IYGG LL + S + + FYDW    LIRRI++  K+++W+DSG+LV IA++ SF+ILKY  + V A  ++ + V E G+EDAFE+L E  E V+TGLWVGDCFIY +S  RLNY VGGE+ T+ HLDR MYLLGY+   +R+YL DKE N++ Y+LL+S++EY+T VMR D   A+++L
Sbjct:  396 WAHDSSEYAIRESNSIVKIFK-NFKEKKSFKPDFGAESIYGGFLLGVRSVNGLAFYDWENTELIRRIEIQPKHIFWSDSGELVCIATEESFFILKYLSEKVLAAQETHEGVTEDGIEDAFEVLGEIQEIVKTGLWVGDCFIYTSSVNRLNYYVGGEIVTIAHLDRTMYLLGYIPKDNRLYLGDKELNIVSYSLLVSVLEYQTAVMRRDFSMADKVL 610          
The following BLAST results are available for this feature:
BLAST of CX675883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
COB21_ORYSJ4.716e-10985.65Coatomer subunit beta'-1 OS=Oryza sativa subsp. ja... [more]
COB21_ARATH2.588e-10784.72Coatomer subunit beta'-1 OS=Arabidopsis thaliana G... [more]
COB23_ARATH4.132e-10581.48Coatomer subunit beta'-3 OS=Arabidopsis thaliana G... [more]
COB22_ARATH7.048e-10581.94Coatomer subunit beta'-2 OS=Arabidopsis thaliana G... [more]
COB23_ORYSJ5.779e-9979.63Putative coatomer subunit beta'-3 OS=Oryza sativa ... [more]
COB22_ORYSJ5.779e-9979.63Coatomer subunit beta'-2 OS=Oryza sativa subsp. ja... [more]
COPB2_DICDI1.178e-5950.46Coatomer subunit beta' OS=Dictyostelium discoideum... [more]
COPB2_RAT2.222e-5851.85Coatomer subunit beta' OS=Rattus norvegicus GN=Cop... [more]
COPB2_PONAB2.222e-5851.85Coatomer subunit beta' OS=Pongo abelii GN=COPB2 PE... [more]
COPB2_MOUSE2.222e-5851.85Coatomer subunit beta' OS=Mus musculus GN=Copb2 PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_65E02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-65E02-J3-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675883 ID=CX675883; Name=CX675883; organism=Citrus sinensis; type=EST; length=669bp
GTTTGGTCATCTGATGGAGAATATGCTGTTAGAGAAAGTTCATCAAAGAT
AAAAATTTTCAGTAAAAATTTTCAGGAAAAAAGGAGTGTCCGACCAACCT
TCTCCGCCGAGCGTATTTATGGAGGAACTTTATTGGCAATGTGCTCAAAT
GATTTTATTTGCTTCTATGATTGGGCTGAATGCAGGCTAATTAGGCGAAT
TGATGTCACTGTGAAAAATCTTTATTGGGCTGACAGTGGTGATCTAGTGG
CAATTGCAAGTGATACATCATTCTACATTCTCAAGTACAATCGCGATGTC
GTTTCAGCTTATTTAGATAGTGGAAAGCCAGTGGATGAACAAGGTGTTGA
AGATGCTTTTGAGCTCCTTCATGAAACCAATGAGCGTGTCAGGACTGGTT
TATGGGTTGGGGATTGTTTCATTTACAACAATTCCTCCTGGAGACTTAAT
TACTGTGTTGGCGGTGAGGTAACCACAATGTTTCATTTGGACCGGCCTAT
GTACTTGTTGGGGTACCTTGCTAGTCAAAGCCGTGTGTATCTGATTGACA
AAGAGTTCAATGTTATGGGATACACATTACTTCTCAGCTTGATTGAGTAC
AAGACTCTTGTCATGCGTGGAGATTTGGAGAGGGCCAATGAAATCTTAAC
CTTCAATTCCAAAAGAGCA
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