CN181855

Overview
NameCN181855
Unique NameCN181855
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length734
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181855 vs. ExPASy Swiss-Prot
Match: HAT4_ARATH (Homeobox-leucine zipper protein HAT4 OS=Arabidopsis thaliana GN=HAT4 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.464e-32
Identity = 75/118 (63.56%), Postives = 77/118 (65.25%), Query Frame = -3
Query:  382 RARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERXXXXXXXXXXXXXXARPTHQMAAPNHHRXXXXXXXXXXXXXPHG-PFDALRPRS 732
            RARTKLKQTEVDCEFL+RCCENLTEENRRLQKEV ELRALKLSPQFYM M+PPTTLTMCPSCE                 P  Q A   HHR              HG  FDALRPRS
Sbjct:  178 RARTKLKQTEVDCEFLRRCCENLTEENRRLQKEVTELRALKLSPQFYMHMSPPTTLTMCPSCEHVSVPP-----------PQPQAATSAHHRSLPVNAWAPATRISHGLTFDALRPRS 284          
BLAST of CN181855 vs. ExPASy Swiss-Prot
Match: ATHB4_ARATH (Homeobox-leucine zipper protein ATHB-4 OS=Arabidopsis thaliana GN=ATHB-4 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.819e-28
Identity = 58/64 (90.62%), Postives = 60/64 (93.75%), Query Frame = -3
Query:  541 RARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCER 732
            RARTKLKQTEVDCE+LKRCC+NLTEENRRLQKEV ELRALKLSP  YM MTPPTTLTMCPSCER
Sbjct:  212 RARTKLKQTEVDCEYLKRCCDNLTEENRRLQKEVSELRALKLSPHLYMHMTPPTTLTMCPSCER 275          
BLAST of CN181855 vs. ExPASy Swiss-Prot
Match: HAT3_ARATH (Homeobox-leucine zipper protein HAT3 OS=Arabidopsis thaliana GN=HAT3 PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.399e-27
Identity = 57/64 (89.06%), Postives = 59/64 (92.19%), Query Frame = -3
Query:  541 RARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCER 732
            RARTKLKQTEVDCE+LKRCCENLT+ENRRLQKEV ELRALKLSP  YM M PPTTLTMCPSCER
Sbjct:  211 RARTKLKQTEVDCEYLKRCCENLTDENRRLQKEVSELRALKLSPHLYMHMKPPTTLTMCPSCER 274          
BLAST of CN181855 vs. ExPASy Swiss-Prot
Match: HOX17_ORYSJ (Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. japonica GN=HOX17 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.317e-27
Identity = 59/65 (90.77%), Postives = 60/65 (92.31%), Query Frame = -3
Query:  541 RARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKL-SPQFYMQMTPPTTLTMCPSCER 732
            RARTKLKQTEVDCEFLKRCCE LTEENRRLQKEVQELRALKL SP  YM M+PPTTLTMCPSCER
Sbjct:  131 RARTKLKQTEVDCEFLKRCCETLTEENRRLQKEVQELRALKLVSPHLYMNMSPPTTLTMCPSCER 195          
BLAST of CN181855 vs. ExPASy Swiss-Prot
Match: HOX17_ORYSI (Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. indica GN=HOX17 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.317e-27
Identity = 59/65 (90.77%), Postives = 60/65 (92.31%), Query Frame = -3
Query:  541 RARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKL-SPQFYMQMTPPTTLTMCPSCER 732
            RARTKLKQTEVDCEFLKRCCE LTEENRRLQKEVQELRALKL SP  YM M+PPTTLTMCPSCER
Sbjct:  131 RARTKLKQTEVDCEFLKRCCETLTEENRRLQKEVQELRALKLVSPHLYMNMSPPTTLTMCPSCER 195          
BLAST of CN181855 vs. ExPASy Swiss-Prot
Match: HAT2_ARATH (Homeobox-leucine zipper protein HAT2 OS=Arabidopsis thaliana GN=HAT2 PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 6.944e-27
Identity = 68/118 (57.63%), Postives = 71/118 (60.17%), Query Frame = -3
Query:  382 RARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERXXXXXXXXXXXXXXARPTHQMAAPNHHRXXXXXXXXXXXXXPHG-PFDALRPRS 732
            RARTKLKQTEVDCE+LKRC E LTEENRRLQKE  ELR LKLSPQFY QMTPPTTL MCPSCER                P+      NH                HG  F+ALRPRS
Sbjct:  179 RARTKLKQTEVDCEYLKRCVEKLTEENRRLQKEAMELRTLKLSPQFYGQMTPPTTLIMCPSCERVGG-------------PSSSNHHHNHRPVSINPWVACAGQVAHGLNFEALRPRS 283          
BLAST of CN181855 vs. ExPASy Swiss-Prot
Match: HAT1_ARATH (Homeobox-leucine zipper protein HAT1 OS=Arabidopsis thaliana GN=HAT1 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.891e-24
Identity = 53/64 (82.81%), Postives = 57/64 (89.06%), Query Frame = -3
Query:  541 RARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCER 732
            RARTKLKQTEVDCE+LKRC E LTEENRRL+KE  ELRALKLSP+ Y QM+PPTTL MCPSCER
Sbjct:  184 RARTKLKQTEVDCEYLKRCVEKLTEENRRLEKEAAELRALKLSPRLYGQMSPPTTLLMCPSCER 247          
BLAST of CN181855 vs. ExPASy Swiss-Prot
Match: HAT14_ARATH (Homeobox-leucine zipper protein HAT14 OS=Arabidopsis thaliana GN=HAT14 PE=2 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 4.213e-24
Identity = 54/64 (84.38%), Postives = 58/64 (90.62%), Query Frame = -3
Query:  541 RARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCER 732
            RARTKLKQTEVDCE+LKRCCE+LTEENRRLQKEV+ELR LK S  FYMQ+ P TTLTMCPSCER
Sbjct:  239 RARTKLKQTEVDCEYLKRCCESLTEENRRLQKEVKELRTLKTSTPFYMQL-PATTLTMCPSCER 301          
BLAST of CN181855 vs. ExPASy Swiss-Prot
Match: HAT22_ARATH (Homeobox-leucine zipper protein HAT22 OS=Arabidopsis thaliana GN=HAT22 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.731e-23
Identity = 52/64 (81.25%), Postives = 57/64 (89.06%), Query Frame = -3
Query:  541 RARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCER 732
            RARTKLKQTEVDCEFLK+CCE LT+ENRRLQKE+Q+L+ALKLS  FYM M P  TLTMCPSCER
Sbjct:  175 RARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQDLKALKLSQPFYMHM-PAATLTMCPSCER 237          
BLAST of CN181855 vs. ExPASy Swiss-Prot
Match: HOX11_ORYSJ (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. japonica GN=HOX11 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.150e-22
Identity = 51/64 (79.69%), Postives = 55/64 (85.94%), Query Frame = -3
Query:  541 RARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCER 732
            RARTKLKQTEVDCE+LKRCCE LTEENRRLQKE+ ELRALK    FYM + P TTL+MCPSCER
Sbjct:  226 RARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELRALKTVHPFYMHL-PATTLSMCPSCER 288          
The following BLAST results are available for this feature:
BLAST of CN181855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
HAT4_ARATH2.464e-3263.56Homeobox-leucine zipper protein HAT4 OS=Arabidopsi... [more]
ATHB4_ARATH2.819e-2890.63Homeobox-leucine zipper protein ATHB-4 OS=Arabidop... [more]
HAT3_ARATH1.399e-2789.06Homeobox-leucine zipper protein HAT3 OS=Arabidopsi... [more]
HOX17_ORYSJ5.317e-2790.77Homeobox-leucine zipper protein HOX17 OS=Oryza sat... [more]
HOX17_ORYSI5.317e-2790.77Homeobox-leucine zipper protein HOX17 OS=Oryza sat... [more]
HAT2_ARATH6.944e-2757.63Homeobox-leucine zipper protein HAT2 OS=Arabidopsi... [more]
HAT1_ARATH1.891e-2482.81Homeobox-leucine zipper protein HAT1 OS=Arabidopsi... [more]
HAT14_ARATH4.213e-2484.38Homeobox-leucine zipper protein HAT14 OS=Arabidops... [more]
HAT22_ARATH2.731e-2381.25Homeobox-leucine zipper protein HAT22 OS=Arabidops... [more]
HOX11_ORYSJ5.150e-2279.69Homeobox-leucine zipper protein HOX11 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001J08_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001J08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181855 ID=CN181855; Name=CN181855; organism=Citrus sinensis; type=EST; length=734bp
CCGTTTTTTCTGACTCGGTCAATTAATAATTAGAGCGTAGACATTCAACT
TCCCACCCGAGGAAGACAAAGAAGAAGGAGAAGGATTAGTAATAATTAGC
ACTAAAATTAAGCTAACACTAATACTTGTCAATAAGTTCAAAACATATTC
AGATGGGTCGTCAATAATTCGAAACAAAGGAAGACCCACCAAATCATATT
TACTACCGACCATATCTTAGACCTAAGACTTTGAACAATAATCATCTCGC
ACGCAACAAACTACAAATGTAAGCCCCCATCCATTCCGTACAACACACAT
CCCAACAGCCTTTACAAGAAGAGCACCATTTTTATGCATTGAAAAAATGA
CCATAACGCCCTTGCATGAGGAATACAATCACGATCGAGGACGGAGTGCA
TCAAAGGGTCCATGAGGGATGGCAGCAGCGGGGGCCCAAGGGTTGATGGG
GATGGGTCTGTGATGATTGGGAGCAGCCATCTGATGAGTAGGCCTAGCCG
GATCAACGGCTGATGCTGCAGCGGATGGTGGGACTGCCACACGCTCACAC
GAAGGACACATCGTAAGTGTTGTGGGTGGGGTCATTTGCATGTAGAACTG
CGGGGAAAGCTTCAGTGCTCTCAGCTCCTGAACTTCTTTCTGCAACCGCC
TGTTCTCCTCCGTCAGATTCTCACAGCATCTCTTCAAGAATTCGCAGTCA
ACCTCAGTTTGCTTCAATTTGGTCCTTGCCCTTC
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