CN188757

Overview
NameCN188757
Unique NameCN188757
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188757 vs. ExPASy Swiss-Prot
Match: FAAA_HUMAN (Fumarylacetoacetase OS=Homo sapiens GN=FAH PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 5.743e-33
Identity = 60/93 (64.52%), Postives = 77/93 (82.80%), Query Frame = -3
Query:  309 YWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 584
            YWT+ QQL HH++NGCNLR GDLL +GTISGPEPE+ G +LEL+W G KP+ L +G TRKFL DGDEV  TG+C+G+GY +GFG C+GK++P+
Sbjct:  323 YWTMLQQLTHHSVNGCNLRPGDLLASGTISGPEPENFGSMLELSWKGTKPIDLGNGQTRKFLLDGDEVIITGYCQGDGYRIGFGQCAGKVLPA 415          
BLAST of CN188757 vs. ExPASy Swiss-Prot
Match: FAAA_BOVIN (Fumarylacetoacetase OS=Bos taurus GN=FAH PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.723e-32
Identity = 59/93 (63.44%), Postives = 76/93 (81.72%), Query Frame = -3
Query:  309 YWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 584
            YWT+ QQL HH++NGCNL+ GDLL +GTISGPEPES GC+LEL+W G + + L +G TRKFL DGDEV  TG C+G+GY +GFG C+GK++P+
Sbjct:  323 YWTMLQQLTHHSVNGCNLQPGDLLASGTISGPEPESFGCMLELSWKGTRAVELGNGQTRKFLLDGDEVIMTGHCQGDGYRIGFGQCAGKVLPA 415          
BLAST of CN188757 vs. ExPASy Swiss-Prot
Match: FAAA_DICDI (Fumarylacetoacetase OS=Dictyostelium discoideum GN=fah PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.116e-31
Identity = 60/95 (63.16%), Postives = 73/95 (76.84%), Query Frame = -3
Query:  309 YWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFT---RKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 584
            YWTLTQQLAHHT+NGCN+ +GDLLGTGTISGP  +S G +LEL+W G K +SL   T   RKF++DGD V  +G CKGNGY +GFG C G I+P+
Sbjct:  329 YWTLTQQLAHHTVNGCNMNAGDLLGTGTISGPTEDSYGSMLELSWKGSKVVSLGTETNEERKFIQDGDSVILSGLCKGNGYQIGFGNCEGTILPA 423          
BLAST of CN188757 vs. ExPASy Swiss-Prot
Match: FAAA_RAT (Fumarylacetoacetase OS=Rattus norvegicus GN=Fah PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.762e-30
Identity = 61/105 (58.10%), Postives = 77/105 (73.33%), Query Frame = -3
Query:  309 ICISFFPNPNDRYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 620
            IC S F +    YWT+ QQL HH++NGCNLR GDLL +GTISG +PES G +LEL+W G K + +  G TR FL DGDEV  TG C+G+GY VGFG C+GK++P+
Sbjct:  314 ICRSNFKH---MYWTILQQLTHHSVNGCNLRPGDLLASGTISGSDPESFGSMLELSWKGTKAIDVGQGQTRTFLLDGDEVIITGHCQGDGYRVGFGQCAGKVLPA 415          
BLAST of CN188757 vs. ExPASy Swiss-Prot
Match: FAAA_MOUSE (Fumarylacetoacetase OS=Mus musculus GN=Fah PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.762e-30
Identity = 61/105 (58.10%), Postives = 77/105 (73.33%), Query Frame = -3
Query:  309 ICISFFPNPNDRYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 620
            IC S F +    YWT+ QQL HH++NGCNLR GDLL +GTISG +PES G +LEL+W G K + +  G TR FL DGDEV  TG C+G+GY VGFG C+GK++P+
Sbjct:  314 ICRSNFKH---MYWTMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESFGSMLELSWKGTKAIDVGQGQTRTFLLDGDEVIITGHCQGDGYRVGFGQCAGKVLPA 415          
BLAST of CN188757 vs. ExPASy Swiss-Prot
Match: FAAA_EMENI (Fumarylacetoacetase OS=Emericella nidulans GN=fahA PE=1 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 1.242e-19
Identity = 51/97 (52.58%), Postives = 62/97 (63.92%), Query Frame = -3
Query:  312 NPNDRYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVP 599
            N  +  ++  Q LAHHTI GCNL +GDLLG+GTISG E ++ G  LE T NG+ P+ L DG  R FLEDGD V   G     G  VGFG C+G I+P
Sbjct:  330 NAKNLLYSFPQMLAHHTITGCNLNTGDLLGSGTISGKENQTEGSFLEQT-NGKNPIKLADGSERLFLEDGDTVILRGMAGTEGNYVGFGDCAGTILP 425          
The following BLAST results are available for this feature:
BLAST of CN188757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
FAAA_HUMAN5.743e-3364.52Fumarylacetoacetase OS=Homo sapiens GN=FAH PE=1 SV... [more]
FAAA_BOVIN3.723e-3263.44Fumarylacetoacetase OS=Bos taurus GN=FAH PE=2 SV=1[more]
FAAA_DICDI4.116e-3163.16Fumarylacetoacetase OS=Dictyostelium discoideum GN... [more]
FAAA_RAT7.762e-3058.10Fumarylacetoacetase OS=Rattus norvegicus GN=Fah PE... [more]
FAAA_MOUSE7.762e-3058.10Fumarylacetoacetase OS=Mus musculus GN=Fah PE=1 SV... [more]
FAAA_EMENI1.242e-1952.58Fumarylacetoacetase OS=Emericella nidulans GN=fahA... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006L08_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006L08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188757 ID=CN188757; Name=CN188757; organism=Citrus sinensis; type=EST; length=802bp
TTTTTGATTAACATTCAAATGAAATATATGGCGTCCAAGAATTGAGATCC
CAATAAAAAGTTATAAACTGAAAAGAAAAGAAGATTTTCACTCCTTTTAG
TTCAATACTCTCATCACATGCACTTTTTTCAATCGTCCCATCTTCAGGTC
TTCATTTCGCGGTCTTGTTAGCTACAAATTCAATTAGATCTATTACACAT
GGACCTGACCAGATGCGGATTCAATGTAAACACAACCACTCTAATTGATT
TCATCAGATGGGCAGACACTCGCTTTGATCACCAAGGGTGGTTGCTTCAC
TAAGGGGTTGATGGGACTATTTTTCCTGAACACGTTCCAAATCCAACAGT
GTAACCGTTTCCCTTGCAAAAACCAGTAAATGTCACTTCATCTCCATCTT
CCAGGAATTTACGAGTAAACCCATCTAGTGAAAGCGGCTTTTGTCCATTC
CATGTTAACTCCAGCAAGCATCCAAGAGATTCTGGCTCAGGTCCACTGAT
GGTGCCAGTTCCAAGCAGATCTCCAGACCTTAGGTTGCAACCATTGATTG
TATGGTGTGCAAGCTGCTGAGTCAATGTCCAATACCTGTCATTGGGGTTA
GGAAAAAAACTAATGCATATTGCACACAAAAAAAGGACCTACGCAACTTT
AGAAGTTTCCTTTAGCTGACCCCAATCAGTACATGATGAATTCACTATCA
GAGGAACGAAAGATGCATCCAAGGAAAGTAAATTTAAGTACTTAAAATTG
CTCCTTGTGACCACACATGAATCTTCTTTTCCAGCAAGTTTGATTTGAAC
CT
back to top