CN181813

Overview
NameCN181813
Unique NameCN181813
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181813 vs. ExPASy Swiss-Prot
Match: RTNLN_ARATH (Reticulon-like protein B14 OS=Arabidopsis thaliana GN=RTNLB14 PE=2 SV=2)

HSP 1 Score: 65.0846 bits (157), Expect = 4.119e-23
Identity = 31/81 (38.27%), Postives = 48/81 (59.26%), Query Frame = -1
Query:  267 FEILEYNFITLLCYFLCFIMITLFIWSK--AAGLIPMSPPTVDEIRLSDRTCTSLFANVNCLLTKFYDISCGENLKLYILA 503
            FE++EY FIT LC  L   +    IWS   ++ LI   PP+++++R+S+     LF  +N  + K YDIS G++ +L  LA
Sbjct:   57 FEVVEYPFITFLCQILLLFIFIFLIWSYIGSSQLIQSKPPSINDLRISESNWRFLFNKINWFIIKLYDISSGKDFRLLFLA 137          

HSP 2 Score: 63.929 bits (154), Expect = 4.119e-23
Identity = 29/57 (50.88%), Postives = 44/57 (77.19%), Query Frame = -3
Query:  109 LYSGFLCLETLPALYLRFQGEVDYLAAKSTQDMRRLFNDFNSKVLDKIPRASAKEKK 279
            LY  F+ LET+P LY +++ E+ Y A+KS +DM++L N FNSKV++KIP+A AK ++
Sbjct:  157 LYIVFVGLETIPMLYEQYEEELTYAASKSGRDMKKLLNKFNSKVINKIPKAQAKTRR 213          
BLAST of CN181813 vs. ExPASy Swiss-Prot
Match: RTNLI_ARATH (Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 2.108e-17
Identity = 28/81 (34.57%), Postives = 44/81 (54.32%), Query Frame = -1
Query:  270 EILEYNFITLLCYFLCFIMITLFIWSKAAGLIPMSPPTVDEIRLSD----RTCTSLFANVNCLLTKFYDISCGENLKLYIL 500
            E++EYNFITL+C+     M+  FIWS A+  +    P + E+ L +    +   S     N +LTK  D++CG +  L+ L
Sbjct:   66 EVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDPPLFFL 146          

HSP 2 Score: 52.7582 bits (125), Expect = 2.108e-17
Identity = 22/58 (37.93%), Postives = 38/58 (65.52%), Query Frame = -3
Query:  106 LYSGFLCLETLPALYLRFQGEVDYLAAKSTQDMRRLFNDFNSKVLDKIPRASAKEKKY 279
            L+ GF+ ++TLP +Y  ++ +VD  A K  + M++L+   ++ VL KIPR + K KK+
Sbjct:  167 LFIGFVSMQTLPVMYEMYEDDVDTAAGKLMRKMKKLYKKVDTNVLSKIPRGTVKNKKF 224          
BLAST of CN181813 vs. ExPASy Swiss-Prot
Match: RTNLC_ARATH (Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 1.118e-12
Identity = 26/82 (31.71%), Postives = 43/82 (52.44%), Query Frame = -1
Query:  270 FEILEYNFITLLCYFLCFIMITLFIWSKAAGLIPMSPPTVDEIRLSD----RTCTSLFANVNCLLTKFYDISCGENLKLYIL 503
            FE+LEYN +TL  +     +  LF+WS A+  I  SP  + E+ + +    +  + L   +N   T   DI+ G +LK ++L
Sbjct:   90 FELLEYNLLTLFGHISILALAVLFLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLL 171          

HSP 2 Score: 35.4242 bits (80), Expect = 1.118e-12
Identity = 14/48 (29.17%), Postives = 31/48 (64.58%), Query Frame = -3
Query:  136 LYSGFLCLETLPALYLRFQGEVDYLAAKSTQDMRRLFNDFNSKVLDKI 279
            +Y   + L T+P LY +++ +VD    K+ +++++ + +F+ KVL K+
Sbjct:  192 IYIATVLLFTIPVLYEKYEDKVDDFGEKAMREIKKQYVEFDVKVLSKV 239          

HSP 3 Score: 29.261 bits (64), Expect = 1.118e-12
Identity = 10/22 (45.45%), Postives = 15/22 (68.18%), Query Frame = -3
Query:  502 LWKNRNLSAAILVVVTVIWLLF 567
            LW+N+ +S  +L   TV W+LF
Sbjct:   69 LWRNKKVSGGVLGAATVSWILF 90          
The following BLAST results are available for this feature:
BLAST of CN181813 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RTNLN_ARATH4.119e-2338.27Reticulon-like protein B14 OS=Arabidopsis thaliana... [more]
RTNLI_ARATH2.108e-1734.57Reticulon-like protein B9 OS=Arabidopsis thaliana ... [more]
RTNLC_ARATH1.118e-1231.71Reticulon-like protein B3 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001I07_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001I07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181813 ID=CN181813; Name=CN181813; organism=Citrus sinensis; type=EST; length=572bp
AAGCATTGTTGGAAAAATCATACAGACTAGAGCCGTGGAGAAAGTTTTGG
CACTTTTAACTAGTCAAGCTATTTCCAGGGTATTTACAAAATCCCTTGTT
CACAGATACTTCTTTTCTTTAGCAGATGCCCTTGGAATCTTGTCAAGAAC
TTTGGAATTGAAATCGTTAAACAACCTCCGCATGTCTTGAGTACTTTTAG
CGGCAAGATAATCCACCTCCCCTTGAAATCGCAAATACAAAGCCGGTAGT
GTTTCCAGGCACAGAAAGCCAGAATATAGAGCTTTAAATTCTCCCCACAT
GAAATATCATAGAATTTCGTCAGTAAACAGTTGACATTCGCAAACAGAGA
TGTGCATGTCCTATCCGACAGCCTGATTTCATCAACTGTGGGTGGACTCA
TGGGGATTAGGCCGGCTGCTTTAGACCAGATGAAGAGGGTGATCATAATG
AAACAGAGGAAGTAGCAGAGAAGAGTAATGAAATTGTACTCAAGAATCTC
AAAAAAGGAGCCATATAACCGTGACCACGACTAGGATTGCTGCTGATAAA
TTCCTGTTCTTCCATAACAGTA
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