CN181792

Overview
NameCN181792
Unique NameCN181792
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig395 contig Csv1_Contig395:123..800. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181792 vs. ExPASy Swiss-Prot
Match: RL23A_TOBAC (60S ribosomal protein L23a OS=Nicotiana tabacum GN=RPL23A PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.238e-64
Identity = 126/154 (81.82%), Postives = 132/154 (85.71%), Query Frame = 2
Query:   59 MAP-KVDSSKKGDPXXXXXXXXXXXXSGPTFKKKAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 517
            MAP K D SKK DP            SG T KKK++K+RT VTFHRPKTLKKDRNPKYPRISAP RNKLD Y ILKYPLTTESAMKKIEDNNTLVFIVDI+ADK+KIKDAVKKMY+IQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct:    1 MAPAKADPSKKSDPKAQAAKVAKAVKSGSTLKKKSQKIRTKVTFHRPKTLKKDRNPKYPRISAPGRNKLDQYGILKYPLTTESAMKKIEDNNTLVFIVDIKADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154          
BLAST of CN181792 vs. ExPASy Swiss-Prot
Match: RL23A_FRIAG (60S ribosomal protein L23A OS=Fritillaria agrestis GN=RPL23A PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.759e-64
Identity = 126/154 (81.82%), Postives = 132/154 (85.71%), Query Frame = 2
Query:   59 MAPKVDSSKKGDPXXXXXXXXXXXXSG-PTFKKKAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 517
            MAP    +KK D             SG  T +KKAKK+RTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADK+KIK AVKKMY+IQTKKVNTLIRPDGTKKAYVRLTPDYDALD+ANKIGII
Sbjct:    1 MAPPAKVAKKPDGKAQALKVAKAVKSGVSTLQKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDIANKIGII 154          
BLAST of CN181792 vs. ExPASy Swiss-Prot
Match: R23A1_ARATH (60S ribosomal protein L23a-1 OS=Arabidopsis thaliana GN=RPL23AA PE=2 SV=2)

HSP 1 Score: 242.276 bits (617), Expect = 1.788e-63
Identity = 124/154 (80.52%), Postives = 131/154 (85.06%), Query Frame = 2
Query:   59 MAP-KVDSSKKGDPXXXXXXXXXXXXSGPTFKKKAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 517
            M+P KVD++KK DP            SG  FKKK KK+RT VTFHRPKTL K R  KYP+ISA PRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADK+KIKDAVKKMY+IQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct:    1 MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPKISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154          
BLAST of CN181792 vs. ExPASy Swiss-Prot
Match: RL23A_DAUCA (60S ribosomal protein L23a OS=Daucus carota GN=RPL23A PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.514e-62
Identity = 124/154 (80.52%), Postives = 131/154 (85.06%), Query Frame = 2
Query:   59 MAP-KVDSSKKGDPXXXXXXXXXXXXSGPTFKKKAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 517
            M+P KVD +KK D             SG T  KK KK+RTSVTFHRP+TL KDRNPKYPRISA PRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRA+K+KIKDAVKKMY+IQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct:    1 MSPAKVDVTKKSDAKAQALKTAKAVKSGTTKFKKVKKIRTSVTFHRPRTLTKDRNPKYPRISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154          
BLAST of CN181792 vs. ExPASy Swiss-Prot
Match: R23A2_ARATH (60S ribosomal protein L23a-2 OS=Arabidopsis thaliana GN=RPL23AB PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 1.977e-62
Identity = 123/154 (79.87%), Postives = 129/154 (83.77%), Query Frame = 2
Query:   59 MAP-KVDSSKKGDPXXXXXXXXXXXXSGPTFKKKAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 517
            M+P KVD +KK DP            SG   KK AKK+RT VTFHRPKTL   R PKYP+ISA PRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADK+KIKDAVKKMY+IQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct:    1 MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPKISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154          
BLAST of CN181792 vs. ExPASy Swiss-Prot
Match: RL23A_RAT (60S ribosomal protein L23a OS=Rattus norvegicus GN=Rpl23a PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 9.526e-49
Identity = 95/121 (78.51%), Postives = 105/121 (86.78%), Query Frame = 2
Query:  155 KAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 517
            K KK+RTS TF RPKTL+  R PKYPR SAP RNKLDHY I+K+PLTTESAMKKIEDNNTLVFIVD++A+K +IK AVKK+Y+I   KVNTLIRPDG KKAYVRL PDYDALDVANKIGII
Sbjct:   36 KKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 156          
BLAST of CN181792 vs. ExPASy Swiss-Prot
Match: RL23A_MOUSE (60S ribosomal protein L23a OS=Mus musculus GN=Rpl23a PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 9.526e-49
Identity = 95/121 (78.51%), Postives = 105/121 (86.78%), Query Frame = 2
Query:  155 KAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 517
            K KK+RTS TF RPKTL+  R PKYPR SAP RNKLDHY I+K+PLTTESAMKKIEDNNTLVFIVD++A+K +IK AVKK+Y+I   KVNTLIRPDG KKAYVRL PDYDALDVANKIGII
Sbjct:   36 KKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 156          
BLAST of CN181792 vs. ExPASy Swiss-Prot
Match: RL23A_HUMAN (60S ribosomal protein L23a OS=Homo sapiens GN=RPL23A PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 9.526e-49
Identity = 95/121 (78.51%), Postives = 105/121 (86.78%), Query Frame = 2
Query:  155 KAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 517
            K KK+RTS TF RPKTL+  R PKYPR SAP RNKLDHY I+K+PLTTESAMKKIEDNNTLVFIVD++A+K +IK AVKK+Y+I   KVNTLIRPDG KKAYVRL PDYDALDVANKIGII
Sbjct:   36 KKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 156          
BLAST of CN181792 vs. ExPASy Swiss-Prot
Match: RL23A_BOVIN (60S ribosomal protein L23a OS=Bos taurus GN=RPL23A PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 9.526e-49
Identity = 95/121 (78.51%), Postives = 105/121 (86.78%), Query Frame = 2
Query:  155 KAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 517
            K KK+RTS TF RPKTL+  R PKYPR SAP RNKLDHY I+K+PLTTESAMKKIEDNNTLVFIVD++A+K +IK AVKK+Y+I   KVNTLIRPDG KKAYVRL PDYDALDVANKIGII
Sbjct:   36 KKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 156          
BLAST of CN181792 vs. ExPASy Swiss-Prot
Match: RL25_PUCGR (60S ribosomal protein L25 OS=Puccinia graminis PE=2 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 5.597e-41
Identity = 81/125 (64.80%), Postives = 100/125 (80.00%), Query Frame = 2
Query:  143 TFKKKAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 517
            T  K  +++RTSVTF RPKTL+  R PKYPR S P   ++D Y+ L  PL TESAMKKIEDNNTL+FIVD++A+KR+I DAVKK+Y++   +VNTLIRPDG KKA+VRLTP+ DALD+ANKIG I
Sbjct:   34 TSSKTQRRIRTSVTFRRPKTLRLSRKPKYPRTSVPHAPRMDAYRTLVRPLNTESAMKKIEDNNTLLFIVDLKANKRQIADAVKKLYDVTPLRVNTLIRPDGKKKAFVRLTPEVDALDIANKIGFI 158          
The following BLAST results are available for this feature:
BLAST of CN181792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
RL23A_TOBAC1.238e-6481.8260S ribosomal protein L23a OS=Nicotiana tabacum GN... [more]
RL23A_FRIAG2.759e-6481.8260S ribosomal protein L23A OS=Fritillaria agrestis... [more]
R23A1_ARATH1.788e-6380.5260S ribosomal protein L23a-1 OS=Arabidopsis thalia... [more]
RL23A_DAUCA1.514e-6280.5260S ribosomal protein L23a OS=Daucus carota GN=RPL... [more]
R23A2_ARATH1.977e-6279.8760S ribosomal protein L23a-2 OS=Arabidopsis thalia... [more]
RL23A_RAT9.526e-4978.5160S ribosomal protein L23a OS=Rattus norvegicus GN... [more]
RL23A_MOUSE9.526e-4978.5160S ribosomal protein L23a OS=Mus musculus GN=Rpl2... [more]
RL23A_HUMAN9.526e-4978.5160S ribosomal protein L23a OS=Homo sapiens GN=RPL2... [more]
RL23A_BOVIN9.526e-4978.5160S ribosomal protein L23a OS=Bos taurus GN=RPL23A... [more]
RL25_PUCGR5.597e-4164.8060S ribosomal protein L25 OS=Puccinia graminis PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001H19_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181792 ID=CN181792; Name=CN181792; organism=Citrus sinensis; type=EST; length=678bp
GAGGCTTACCTCTCGCAGGGTTAGATTCAGAGGTGTTTCGTAGGACAAGT
CCAATCCAATGGCTCCCAAAGTTGACAGCTCAAAAAAGGGTGATCCAAAG
GCCCAGGCTACTAAGGTTGCCAAGGCTGTGAAATCAGGGCCGACTTTTAA
GAAGAAGGCGAAGAAGATGCGGACCTCAGTTACATTCCATAGGCCAAAGA
CCCTGAAGAAGGACAGAAACCCCAAGTATCCCCGCATTAGTGCTCCACCG
AGGAACAAGTTGGACCACTACCAAATTCTCAAGTATCCCTTGACTACCGA
ATCAGCTATGAAGAAGATCGAGGACAATAATACCTTGGTTTTCATTGTTG
ACATCCGTGCTGATAAGAGGAAGATCAAGGATGCCGTCAAGAAAATGTAC
GAAATTCAGACCAAGAAAGTCAACACTTTGATCAGACCTGATGGAACTAA
GAAGGCATATGTTAGGCTGACTCCGGATTATGATGCATTGGATGTGGCCA
ACAAGATTGGAATTATCTAAGGAGTGAGTTCGTGTGTATTGTCAACAGTT
TTGTTAGGACTCCAATTTCGTTTTGGTTATTTTCAAATATGTACTCAGAT
CTATCTTTTATATTGAGTTTTTGCATTGGATGCCTATTAAGATCATCGTT
AAACTTGTTCTGCCCTTAACTGCATCTC
back to top