CX675859
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX675859 vs. ExPASy Swiss-Prot
Match: POL5_DROME (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster GN=pol PE=4 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 5.665e-26 Identity = 71/198 (35.86%), Postives = 113/198 (57.07%), Query Frame = 3 Query: 219 QKCHFMVK*GIVLGHIISSKGIEVDKAKVDLISNLPSLKTVREVRSLLGHAGFYRRLIKDFSKISRLLCNLF-----------AKDVPFVFDYSCLVAFEKLKRLLTSSPIIQPLNWSLPFELMCDASDYALGAVLG*KVD*IPHVIYYASMTLNDAQLNYSTTEKERLAVVFALEKFRSYLIGCKII-VFTDYAGLS 776 +K HF+ LG+I+++ GI+ D KV IS +P +V+E++ LG +YR+ I+D++K+++ L NL + VP D + L +F LK +L SS I+ ++ PF L DAS++A+GAVL I Y S +LN + NY+T EKE LA++++L+ R+YL G I V+TD+ L+ Sbjct: 315 EKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYLYGAGTIKVYTDHQPLT 512
BLAST of CX675859 vs. ExPASy Swiss-Prot
Match: POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=4 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 1.262e-25 Identity = 71/189 (37.57%), Postives = 106/189 (56.08%), Query Frame = 3 Query: 210 LAFQKCHFMVK*GIVLGHIISSKGIEVDKAKVDLISNLPSLKTVREVRSLLGHAGFYRRLIKDFSKISRLLCNLFAKDVPF-VFDYSCLVAFEKLKRLLTSSPIIQPLNWSLPFELMCDASDYALGAVLG*KVD*IPHVIYYASMTLNDAQLNYSTTEKERLAVVFALEKFRSYLIGCKIIVFTDYAGL 773 L KC F+ K LGHI++ GI+ + KV I + P +E+R+ LG G+YR+ I +++ I++ + + K + AFEKLK L+ PI+Q ++ F L DAS+ ALGAVL H I + S TLND +LNYS EKE LA+V+A + FR YL+G + ++ +D+ L Sbjct: 395 LQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALGAVLSQN----GHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLIASDHQPL 579
BLAST of CX675859 vs. ExPASy Swiss-Prot
Match: POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=4 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.648e-25 Identity = 69/198 (34.85%), Postives = 113/198 (57.07%), Query Frame = 3 Query: 210 LAFQKCHFMVK*GIVLGHIISSKGIEVDKAKVDLISNLPSLKTVREVRSLLGHAGFYRRLIKDFSKISRLLCNLFAKDVPFVF---DYSCLVAFEKLKRLLTSSPIIQPLNWSLPFELMCDASDYALGAVLG*KVD*IPHVIYYASMTLNDAQLNYSTTEKERLAVVFALEKFRSYLIGCKIIVFTDYAGLSNIFLQK 794 L KC F+ + LGH+++ GI+ + K++ I P +E+++ LG G+YR+ I +F+ I++ + K++ +Y AF+KLK L++ PI++ +++ F L DASD ALGAVL H + Y S TLN+ ++NYST EKE LA+V+A + FR YL+G + +D+ LS ++ K Sbjct: 396 LQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDS--AFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVLSQD----GHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLSWLYRMK 587
BLAST of CX675859 vs. ExPASy Swiss-Prot
Match: POL4_DROME (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster GN=POL PE=4 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 7.166e-21 Identity = 66/189 (34.92%), Postives = 94/189 (49.74%), Query Frame = 3 Query: 219 QKCHFMVK*GIVLGHIISSKGIEVDKAKVDLISNLPSLKTVREVRSLLGHAGFYRRLIKDFSKISRLLCNLFAKDVPFVFDYSCLVAFEKLKRLLTSSPIIQPLNWSLPFELMCDASDYALGAVLG*KVD*IPHVIYYASMTLNDAQLNYSTTEKERLAVVFALEKFRSYLIGCKIIVFTDYAGLSNIF 785 +KC F + LGH + KGI D K D+I N P R + +YRR IK+F+ SR + L K+VPF + C AF LK L + ++Q ++S F + DAS A GAVL + + YAS + N STTE+E A+ +A+ FR Y+ G V TD+ L+ +F Sbjct: 507 EKCSFFMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPHDADSARRFVAFCNYYRRFIKNFADYSRHITRLCKKNVPFEWTDECQKAFIHLKSQLINPTLLQYPDFSKEFCITTDASKQACGAVLTQNHNGHQLPVAYASRAFTKGESNKSTTEQELAAIHWAIIHFRPYIYGKHFTVKTDHRPLTYLF 695
BLAST of CX675859 vs. ExPASy Swiss-Prot
Match: POLY_DROME (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster GN=pol PE=4 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 2.305e-19 Identity = 66/187 (35.29%), Postives = 101/187 (54.01%), Query Frame = 3 Query: 255 LGHIISSKGIEVDKAKVDLISNLPSLKTVREVRSLLGHAGFYRRLIKDFSKISRLLCNL-----------FAKDVPFVFDYSCLVAFEKLKRLLTSSPIIQPL-NWSLPFELMCDASDYALGAVLG*KVD*IPHVIYYASMTLNDAQLNYSTTEKERLAVVFALEKFRSYLIGCK-IIVFTDYAGLS 776 LG I+S G + D KV I P V +VRS LG A +YR IKDF+ I+R + ++ +K +P F+ + AF++L+ +L S +I ++ PF+L DAS +GAVL + I S TL + NY+T E+E LA+V+AL K +++L G + I +FTD+ L+ Sbjct: 386 LGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKYPDFKKPFDLTTDASASGIGAVLSQE----GRPITMISRTLKQPEQNYATNERELLAIVWALGKLQNFLYGSREINIFTDHQPLT 568
BLAST of CX675859 vs. ExPASy Swiss-Prot
Match: RTF23_SCHPO (Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11 PE=4 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 9.686e-18 Identity = 58/171 (33.92%), Postives = 92/171 (53.80%), Query Frame = 3 Query: 222 KCHFMVK*GIVLGHIISSKGIEVDKAKVDLISNLPSLKTVREVRSLLGHAGFYRRLIKDFSKISRLLCNLFAKDVPFVFDYSCLVAFEKLKRLLTSSPIIQPLNWSLPFELMCDASDYALGAVLG*KVD*IPHV-IYYASMTLNDAQLNYSTTEKERLAVVFALEKFRSYL 731 KC F +G+ IS KG + +D + K +E+R LG + R+ I S+++ L NL KDV + + + A E +K+ L S P+++ ++S L DASD A+GAVL K D + + Y S ++ AQLNYS ++KE LA++ +L+ +R YL Sbjct: 600 KCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYL 770
BLAST of CX675859 vs. ExPASy Swiss-Prot
Match: RTF22_SCHPO (Retrotransposable element Tf2 155 kDa protein type 2 OS=Schizosaccharomyces pombe GN=Tf2-7 PE=2 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 9.686e-18 Identity = 58/171 (33.92%), Postives = 92/171 (53.80%), Query Frame = 3 Query: 222 KCHFMVK*GIVLGHIISSKGIEVDKAKVDLISNLPSLKTVREVRSLLGHAGFYRRLIKDFSKISRLLCNLFAKDVPFVFDYSCLVAFEKLKRLLTSSPIIQPLNWSLPFELMCDASDYALGAVLG*KVD*IPHV-IYYASMTLNDAQLNYSTTEKERLAVVFALEKFRSYL 731 KC F +G+ IS KG + +D + K +E+R LG + R+ I S+++ L NL KDV + + + A E +K+ L S P+++ ++S L DASD A+GAVL K D + + Y S ++ AQLNYS ++KE LA++ +L+ +R YL Sbjct: 600 KCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYL 770
BLAST of CX675859 vs. ExPASy Swiss-Prot
Match: RTF21_SCHPO (Retrotransposable element Tf2 155 kDa protein type 1 OS=Schizosaccharomyces pombe GN=Tf2-1 PE=2 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 9.686e-18 Identity = 58/171 (33.92%), Postives = 92/171 (53.80%), Query Frame = 3 Query: 222 KCHFMVK*GIVLGHIISSKGIEVDKAKVDLISNLPSLKTVREVRSLLGHAGFYRRLIKDFSKISRLLCNLFAKDVPFVFDYSCLVAFEKLKRLLTSSPIIQPLNWSLPFELMCDASDYALGAVLG*KVD*IPHV-IYYASMTLNDAQLNYSTTEKERLAVVFALEKFRSYL 731 KC F +G+ IS KG + +D + K +E+R LG + R+ I S+++ L NL KDV + + + A E +K+ L S P+++ ++S L DASD A+GAVL K D + + Y S ++ AQLNYS ++KE LA++ +L+ +R YL Sbjct: 600 KCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYL 770
BLAST of CX675859 vs. ExPASy Swiss-Prot
Match: YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-I PE=3 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 2.916e-14 Identity = 65/191 (34.03%), Postives = 96/191 (50.26%), Query Frame = 3 Query: 219 QKCHFMVK*GIVLGHIISSKGIEVDKAKVDLISNLPSLKTVREVRSLLGHAGFYRRLIKDFSKISRLLCNLFAKDVPFVFDYSCLVAFEKLKRLLTSSPIIQPLNWSLPFELMCDASDYALGAVLG*KVD---*IPHVIYYASMTLNDAQLNYSTTEKERLAVVFALEKFRSYLIGCKIIVFTDYAGLSNI 782 +KC F + LG+ I + I + K I + P+ KTV++ + LG +YRR I + SKI++ + LF D + A EKLK L +SP++ P N + L DAS +GAVL +VD + V+ Y S +L AQ NY E E L ++ AL FR L G + TD+ L ++ Sbjct: 807 KKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPI-QLFICD-KSQWTEKQDKAIEKLKAALCNSPVLVPFNNKANYRLTTDASKDGIGAVLE-EVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSL 994
BLAST of CX675859 vs. ExPASy Swiss-Prot
Match: YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G PE=1 SV=3) HSP 1 Score: 77.7962 bits (190), Expect = 8.485e-14 Identity = 64/191 (33.51%), Postives = 96/191 (50.26%), Query Frame = 3 Query: 219 QKCHFMVK*GIVLGHIISSKGIEVDKAKVDLISNLPSLKTVREVRSLLGHAGFYRRLIKDFSKISRLLCNLFAKDVPFVFDYSCLVAFEKLKRLLTSSPIIQPLNWSLPFELMCDASDYALGAVLG*KVD---*IPHVIYYASMTLNDAQLNYSTTEKERLAVVFALEKFRSYLIGCKIIVFTDYAGLSNI 782 +KC F + LG+ I + I + K I + P+ KTV++ + LG +YRR I + SKI++ + LF D + A +KLK L +SP++ P N + L DAS +GAVL +VD + V+ Y S +L AQ NY E E L ++ AL FR L G + TD+ L ++ Sbjct: 781 KKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPI-QLFICD-KSQWTEKQDKAIDKLKDALCNSPVLVPFNNKANYRLTTDASKDGIGAVLE-EVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSL 968 The following BLAST results are available for this feature:
BLAST of CX675859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX675859 ID=CX675859; Name=CX675859; organism=Citrus sinensis; type=EST; length=846bpback to top |