CX675859

Overview
NameCX675859
Unique NameCX675859
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675859 vs. ExPASy Swiss-Prot
Match: POL5_DROME (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster GN=pol PE=4 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.665e-26
Identity = 71/198 (35.86%), Postives = 113/198 (57.07%), Query Frame = 3
Query:  219 QKCHFMVK*GIVLGHIISSKGIEVDKAKVDLISNLPSLKTVREVRSLLGHAGFYRRLIKDFSKISRLLCNLF-----------AKDVPFVFDYSCLVAFEKLKRLLTSSPIIQPLNWSLPFELMCDASDYALGAVLG*KVD*IPHVIYYASMTLNDAQLNYSTTEKERLAVVFALEKFRSYLIGCKII-VFTDYAGLS 776
            +K HF+      LG+I+++ GI+ D  KV  IS +P   +V+E++  LG   +YR+ I+D++K+++ L NL            +  VP   D + L +F  LK +L SS I+    ++ PF L  DAS++A+GAVL          I Y S +LN  + NY+T EKE LA++++L+  R+YL G   I V+TD+  L+
Sbjct:  315 EKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYLYGAGTIKVYTDHQPLT 512          
BLAST of CX675859 vs. ExPASy Swiss-Prot
Match: POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=4 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.262e-25
Identity = 71/189 (37.57%), Postives = 106/189 (56.08%), Query Frame = 3
Query:  210 LAFQKCHFMVK*GIVLGHIISSKGIEVDKAKVDLISNLPSLKTVREVRSLLGHAGFYRRLIKDFSKISRLLCNLFAKDVPF-VFDYSCLVAFEKLKRLLTSSPIIQPLNWSLPFELMCDASDYALGAVLG*KVD*IPHVIYYASMTLNDAQLNYSTTEKERLAVVFALEKFRSYLIGCKIIVFTDYAGL 773
            L   KC F+ K    LGHI++  GI+ +  KV  I + P     +E+R+ LG  G+YR+ I +++ I++ + +   K           + AFEKLK L+   PI+Q  ++   F L  DAS+ ALGAVL        H I + S TLND +LNYS  EKE LA+V+A + FR YL+G + ++ +D+  L
Sbjct:  395 LQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALGAVLSQN----GHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLIASDHQPL 579          
BLAST of CX675859 vs. ExPASy Swiss-Prot
Match: POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=4 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.648e-25
Identity = 69/198 (34.85%), Postives = 113/198 (57.07%), Query Frame = 3
Query:  210 LAFQKCHFMVK*GIVLGHIISSKGIEVDKAKVDLISNLPSLKTVREVRSLLGHAGFYRRLIKDFSKISRLLCNLFAKDVPFVF---DYSCLVAFEKLKRLLTSSPIIQPLNWSLPFELMCDASDYALGAVLG*KVD*IPHVIYYASMTLNDAQLNYSTTEKERLAVVFALEKFRSYLIGCKIIVFTDYAGLSNIFLQK 794
            L   KC F+ +    LGH+++  GI+ +  K++ I   P     +E+++ LG  G+YR+ I +F+ I++ +     K++       +Y    AF+KLK L++  PI++  +++  F L  DASD ALGAVL        H + Y S TLN+ ++NYST EKE LA+V+A + FR YL+G    + +D+  LS ++  K
Sbjct:  396 LQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDS--AFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVLSQD----GHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLSWLYRMK 587          
BLAST of CX675859 vs. ExPASy Swiss-Prot
Match: POL4_DROME (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster GN=POL PE=4 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.166e-21
Identity = 66/189 (34.92%), Postives = 94/189 (49.74%), Query Frame = 3
Query:  219 QKCHFMVK*GIVLGHIISSKGIEVDKAKVDLISNLPSLKTVREVRSLLGHAGFYRRLIKDFSKISRLLCNLFAKDVPFVFDYSCLVAFEKLKRLLTSSPIIQPLNWSLPFELMCDASDYALGAVLG*KVD*IPHVIYYASMTLNDAQLNYSTTEKERLAVVFALEKFRSYLIGCKIIVFTDYAGLSNIF 785
            +KC F +     LGH  + KGI  D  K D+I N P        R  +    +YRR IK+F+  SR +  L  K+VPF +   C  AF  LK  L +  ++Q  ++S  F +  DAS  A GAVL    +     + YAS      + N STTE+E  A+ +A+  FR Y+ G    V TD+  L+ +F
Sbjct:  507 EKCSFFMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPHDADSARRFVAFCNYYRRFIKNFADYSRHITRLCKKNVPFEWTDECQKAFIHLKSQLINPTLLQYPDFSKEFCITTDASKQACGAVLTQNHNGHQLPVAYASRAFTKGESNKSTTEQELAAIHWAIIHFRPYIYGKHFTVKTDHRPLTYLF 695          
BLAST of CX675859 vs. ExPASy Swiss-Prot
Match: POLY_DROME (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster GN=pol PE=4 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.305e-19
Identity = 66/187 (35.29%), Postives = 101/187 (54.01%), Query Frame = 3
Query:  255 LGHIISSKGIEVDKAKVDLISNLPSLKTVREVRSLLGHAGFYRRLIKDFSKISRLLCNL-----------FAKDVPFVFDYSCLVAFEKLKRLLTSSPIIQPL-NWSLPFELMCDASDYALGAVLG*KVD*IPHVIYYASMTLNDAQLNYSTTEKERLAVVFALEKFRSYLIGCK-IIVFTDYAGLS 776
            LG I+S  G + D  KV  I   P    V +VRS LG A +YR  IKDF+ I+R + ++            +K +P  F+ +   AF++L+ +L S  +I    ++  PF+L  DAS   +GAVL  +       I   S TL   + NY+T E+E LA+V+AL K +++L G + I +FTD+  L+
Sbjct:  386 LGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKYPDFKKPFDLTTDASASGIGAVLSQE----GRPITMISRTLKQPEQNYATNERELLAIVWALGKLQNFLYGSREINIFTDHQPLT 568          
BLAST of CX675859 vs. ExPASy Swiss-Prot
Match: RTF23_SCHPO (Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11 PE=4 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.686e-18
Identity = 58/171 (33.92%), Postives = 92/171 (53.80%), Query Frame = 3
Query:  222 KCHFMVK*GIVLGHIISSKGIEVDKAKVDLISNLPSLKTVREVRSLLGHAGFYRRLIKDFSKISRLLCNLFAKDVPFVFDYSCLVAFEKLKRLLTSSPIIQPLNWSLPFELMCDASDYALGAVLG*KVD*IPHV-IYYASMTLNDAQLNYSTTEKERLAVVFALEKFRSYL 731
            KC F       +G+ IS KG    +  +D +      K  +E+R  LG   + R+ I   S+++  L NL  KDV + +  +   A E +K+ L S P+++  ++S    L  DASD A+GAVL  K D   +  + Y S  ++ AQLNYS ++KE LA++ +L+ +R YL
Sbjct:  600 KCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYL 770          
BLAST of CX675859 vs. ExPASy Swiss-Prot
Match: RTF22_SCHPO (Retrotransposable element Tf2 155 kDa protein type 2 OS=Schizosaccharomyces pombe GN=Tf2-7 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.686e-18
Identity = 58/171 (33.92%), Postives = 92/171 (53.80%), Query Frame = 3
Query:  222 KCHFMVK*GIVLGHIISSKGIEVDKAKVDLISNLPSLKTVREVRSLLGHAGFYRRLIKDFSKISRLLCNLFAKDVPFVFDYSCLVAFEKLKRLLTSSPIIQPLNWSLPFELMCDASDYALGAVLG*KVD*IPHV-IYYASMTLNDAQLNYSTTEKERLAVVFALEKFRSYL 731
            KC F       +G+ IS KG    +  +D +      K  +E+R  LG   + R+ I   S+++  L NL  KDV + +  +   A E +K+ L S P+++  ++S    L  DASD A+GAVL  K D   +  + Y S  ++ AQLNYS ++KE LA++ +L+ +R YL
Sbjct:  600 KCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYL 770          
BLAST of CX675859 vs. ExPASy Swiss-Prot
Match: RTF21_SCHPO (Retrotransposable element Tf2 155 kDa protein type 1 OS=Schizosaccharomyces pombe GN=Tf2-1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.686e-18
Identity = 58/171 (33.92%), Postives = 92/171 (53.80%), Query Frame = 3
Query:  222 KCHFMVK*GIVLGHIISSKGIEVDKAKVDLISNLPSLKTVREVRSLLGHAGFYRRLIKDFSKISRLLCNLFAKDVPFVFDYSCLVAFEKLKRLLTSSPIIQPLNWSLPFELMCDASDYALGAVLG*KVD*IPHV-IYYASMTLNDAQLNYSTTEKERLAVVFALEKFRSYL 731
            KC F       +G+ IS KG    +  +D +      K  +E+R  LG   + R+ I   S+++  L NL  KDV + +  +   A E +K+ L S P+++  ++S    L  DASD A+GAVL  K D   +  + Y S  ++ AQLNYS ++KE LA++ +L+ +R YL
Sbjct:  600 KCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYL 770          
BLAST of CX675859 vs. ExPASy Swiss-Prot
Match: YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-I PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.916e-14
Identity = 65/191 (34.03%), Postives = 96/191 (50.26%), Query Frame = 3
Query:  219 QKCHFMVK*GIVLGHIISSKGIEVDKAKVDLISNLPSLKTVREVRSLLGHAGFYRRLIKDFSKISRLLCNLFAKDVPFVFDYSCLVAFEKLKRLLTSSPIIQPLNWSLPFELMCDASDYALGAVLG*KVD---*IPHVIYYASMTLNDAQLNYSTTEKERLAVVFALEKFRSYLIGCKIIVFTDYAGLSNI 782
            +KC F  +    LG+ I  + I   + K   I + P+ KTV++ +  LG   +YRR I + SKI++ +  LF  D    +      A EKLK  L +SP++ P N    + L  DAS   +GAVL  +VD    +  V+ Y S +L  AQ NY   E E L ++ AL  FR  L G    + TD+  L ++
Sbjct:  807 KKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPI-QLFICD-KSQWTEKQDKAIEKLKAALCNSPVLVPFNNKANYRLTTDASKDGIGAVLE-EVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSL 994          
BLAST of CX675859 vs. ExPASy Swiss-Prot
Match: YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 8.485e-14
Identity = 64/191 (33.51%), Postives = 96/191 (50.26%), Query Frame = 3
Query:  219 QKCHFMVK*GIVLGHIISSKGIEVDKAKVDLISNLPSLKTVREVRSLLGHAGFYRRLIKDFSKISRLLCNLFAKDVPFVFDYSCLVAFEKLKRLLTSSPIIQPLNWSLPFELMCDASDYALGAVLG*KVD---*IPHVIYYASMTLNDAQLNYSTTEKERLAVVFALEKFRSYLIGCKIIVFTDYAGLSNI 782
            +KC F  +    LG+ I  + I   + K   I + P+ KTV++ +  LG   +YRR I + SKI++ +  LF  D    +      A +KLK  L +SP++ P N    + L  DAS   +GAVL  +VD    +  V+ Y S +L  AQ NY   E E L ++ AL  FR  L G    + TD+  L ++
Sbjct:  781 KKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPI-QLFICD-KSQWTEKQDKAIDKLKDALCNSPVLVPFNNKANYRLTTDASKDGIGAVLE-EVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSL 968          
The following BLAST results are available for this feature:
BLAST of CX675859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
POL5_DROME5.665e-2635.86Retrovirus-related Pol polyprotein from transposon... [more]
POL2_DROME1.262e-2537.57Retrovirus-related Pol polyprotein from transposon... [more]
POL3_DROME1.648e-2534.85Retrovirus-related Pol polyprotein from transposon... [more]
POL4_DROME7.166e-2134.92Retrovirus-related Pol polyprotein from transposon... [more]
POLY_DROME2.305e-1935.29Retrovirus-related Pol polyprotein from transposon... [more]
RTF23_SCHPO9.686e-1833.92Retrotransposable element Tf2 155 kDa protein type... [more]
RTF22_SCHPO9.686e-1833.92Retrotransposable element Tf2 155 kDa protein type... [more]
RTF21_SCHPO9.686e-1833.92Retrotransposable element Tf2 155 kDa protein type... [more]
YI31B_YEAST2.916e-1434.03Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomy... [more]
YG31B_YEAST8.485e-1433.51Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomy... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_65C09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-65C09-F17-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675859 ID=CX675859; Name=CX675859; organism=Citrus sinensis; type=EST; length=846bp
CTTGGTTGGCTTGGAGGCGAGGACGTTGGCAGAGATTGCCGTACCACGTA
AAAATCCGTGTGTTTATTTTTCTCTTCCCTTACTCTTTATTATTATGCTT
GTTTGAATTTATTGTTTTCTATTCCATTAAGGCGTTAGATTGATTTGTTG
TGTGAATTGTATTGCATTAGTTTTAAAATCCCAATTCACCCCCCTCTTGG
GTTGCATAACTTGCATTTCAAAAGTGCCATTTTATGGTAAAATAAGGTAT
AGTTCTCGGTCACATCATTTCAAGCAAAGGTATTGAGGTTGATAAAGCCA
AGGTGGATCTCATTTCCAATCTTCCTTCACTTAAAACAGTTAGAGAAGTA
AGATCTTTACTTGGGCATGCTGGTTTTTATAGACGTTTAATTAAAGATTT
TAGTAAAATTTCTCGACTCTTATGCAATCTATTTGCTAAGGATGTACCTT
TTGTCTTTGATTATTCATGTCTTGTGGCATTTGAAAAACTAAAACGATTG
TTGACATCATCACCCATCATTCAGCCTCTAAACTGGAGTTTACCATTTGA
GCTTATGTGTGATGCATCTGATTACGCACTAGGAGCAGTATTGGGATAAA
AAGTTGATTGAATTCCCCATGTTATTTACTATGCTAGTATGACATTGAAT
GATGCACAATTGAACTATTCAACCACTGAAAAAGAAAGGCTAGCAGTAGT
GTTTGCATTAGAGAAATTTCGATCTTATCTCATTGGTTGTAAAATAATTG
TGTTCACAGATTATGCTGGTCTTAGCAATATCTTCTTACAAAAAAAGTTG
CAAAAGCTAGACTAATTCATTGGGTGTTACTTTTGTAGGAATTTGA
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