FC921833

Overview
NameFC921833
Unique NameFC921833
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length334
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921833 vs. ExPASy Swiss-Prot
Match: TRNH_DATST (Tropinone reductase homolog OS=Datura stramonium PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.780e-20
Identity = 44/70 (62.86%), Postives = 57/70 (81.43%), Query Frame = -3
Query:    3 RWSLQGMTALVTGGTKGLGLAVVEELSMLGATVHTCSRTETELNECIHHLQMKGLKVTGSVCDVSSGPQR 212
            RWSL+GMTALVTGGT+G+G A+VEEL+  GA V+TCSR++ +L+EC+   + KG KV+G VCDVSS  QR
Sbjct:   12 RWSLRGMTALVTGGTRGIGYAIVEELANFGAEVYTCSRSQNDLDECLEKWRRKGFKVSGPVCDVSSISQR 81          
BLAST of FC921833 vs. ExPASy Swiss-Prot
Match: TRNH1_ARATH (Tropinone reductase homolog At1g07440 OS=Arabidopsis thaliana GN=At1g07440 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.510e-19
Identity = 43/73 (58.90%), Postives = 53/73 (72.60%), Query Frame = -3
Query:    3 RQNRWSLQGMTALVTGGTKGLGLAVVEELSMLGATVHTCSRTETELNECIHHLQMKGLKVTGSVCDVSSGPQR 221
            +  RWSL+  T LVTGGTKG+G A+VEE +  GA +HTC+R E ELNEC+   Q KG +VTGSVCD S  P+R
Sbjct:    6 QSQRWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPER 78          
BLAST of FC921833 vs. ExPASy Swiss-Prot
Match: TRN1_DATST (Tropinone reductase 1 OS=Datura stramonium GN=TR1 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.740e-19
Identity = 44/74 (59.46%), Postives = 57/74 (77.03%), Query Frame = -3
Query:    3 SRQNRWSLQGMTALVTGGTKGLGLAVVEELSMLGATVHTCSRTETELNECIHHLQMKGLKVTGSVCDVSSGPQR 224
            + + RWSL+G TALVTGG+KG+G A+VEEL+ LGA V+TCSR E EL+EC+   + KGL V GSVCD+ S  +R
Sbjct:   12 NNEGRWSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTER 85          
BLAST of FC921833 vs. ExPASy Swiss-Prot
Match: TRN2_DATST (Tropinone reductase 2 OS=Datura stramonium GN=TR2 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.848e-18
Identity = 40/70 (57.14%), Postives = 55/70 (78.57%), Query Frame = -3
Query:    3 RWSLQGMTALVTGGTKGLGLAVVEELSMLGATVHTCSRTETELNECIHHLQMKGLKVTGSVCDVSSGPQR 212
            RW+L+G TALVTGG++G+G  +VEEL+ LGA+V+TCSR + ELN+C+   + KG KV  SVCD+SS  +R
Sbjct:    4 RWNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSER 73          
BLAST of FC921833 vs. ExPASy Swiss-Prot
Match: TRN2_HYONI (Tropinone reductase 2 OS=Hyoscyamus niger GN=TR2 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.411e-17
Identity = 39/70 (55.71%), Postives = 54/70 (77.14%), Query Frame = -3
Query:    3 RWSLQGMTALVTGGTKGLGLAVVEELSMLGATVHTCSRTETELNECIHHLQMKGLKVTGSVCDVSSGPQR 212
            RW+L+G TALVTGG++G+G  +VEEL+ LGA+V+TCSR + EL+EC+   + KG  V  SVCD+SS  +R
Sbjct:    4 RWNLEGCTALVTGGSRGIGYGIVEELANLGASVYTCSRNQKELDECLTQWRSKGFNVEASVCDLSSRSER 73          
The following BLAST results are available for this feature:
BLAST of FC921833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
TRNH_DATST6.780e-2062.86Tropinone reductase homolog OS=Datura stramonium P... [more]
TRNH1_ARATH1.510e-1958.90Tropinone reductase homolog At1g07440 OS=Arabidops... [more]
TRN1_DATST5.740e-1959.46Tropinone reductase 1 OS=Datura stramonium GN=TR1 ... [more]
TRN2_DATST2.848e-1857.14Tropinone reductase 2 OS=Datura stramonium GN=TR2 ... [more]
TRN2_HYONI2.411e-1755.71Tropinone reductase 2 OS=Hyoscyamus niger GN=TR2 P... [more]
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Properties
Property NameValue
Genbank descriptionC06052H10T7 RindPdigS Citrus sinensis cDNA clone C06052H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921833 ID=FC921833; Name=FC921833; organism=Citrus sinensis; type=EST; length=334bp
TGTCTTTGAGGTCCAGACGATACATCACAGACTGAACCGGTGACTTTCAA
ACCTTTCATCTGCAGGTGATGTATACATTCATTAAGCTCTGTTTCAGTCC
TAGAGCATGTATGCACGGTGGCGCCTAGCATTGACAGTTCCTCTACAACA
GCAAGCCCGAGTCCTTTGGTGCCACCAGTAACAAGAGCTGTCATGCCCTG
AAGACTCCATCTGTTTTGCCTGCTATGGCTCTCTGTCTGCTGAGGCTGAG
CCATTCTGATCTCTGCTCTGTCTCTTCCTCTTCTAGTATTGCTGGCCACT
ATTATATTGCCTTAGTTTTGCTTAGCCGCCCCGC
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