CX675850

Overview
NameCX675850
Unique NameCX675850
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675850 vs. ExPASy Swiss-Prot
Match: Y3478_ARATH (UPF0424 protein At3g04780 OS=Arabidopsis thaliana GN=At3g04780 PE=1 SV=2)

HSP 1 Score: 296.204 bits (757), Expect = 1.414e-79
Identity = 145/176 (82.39%), Postives = 160/176 (90.91%), Query Frame = 3
Query:   33 MSAESTTAINRSIVDLLDFIDWSGVECLNHNTAHSLPNAIKQGYREDEGLYLESDADEQLLIYLPFTQVVKLHSIVVKGPEEEGPKTVKLFSNREHMGFSNVNDFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSGSEVTKVDKIALFGTTVETTDMKGLKKIEDN 560
            MSAES + I +  VDLLDFIDWSGVECLN +++HSLPNA+KQGYREDEGL LESDADEQLLIY+PF QV+KLHS  +KGPEEEGPKTVK FSN+EHM FSNVNDFPPSDTA LT +NLKGKPVVLK+VKFQNVRSLTIFIE NQSGSEVTKV KIAL+G+TVETTDMKGLKKIED+
Sbjct:    1 MSAESASQIPKGQVDLLDFIDWSGVECLNQSSSHSLPNALKQGYREDEGLNLESDADEQLLIYIPFNQVIKLHSFAIKGPEEEGPKTVKFFSNKEHMCFSNVNDFPPSDTAELTEENLKGKPVVLKYVKFQNVRSLTIFIEANQSGSEVTKVQKIALYGSTVETTDMKGLKKIEDH 176          
BLAST of CX675850 vs. ExPASy Swiss-Prot
Match: TXNL1_HUMAN (Thioredoxin-like protein 1 OS=Homo sapiens GN=TXNL1 PE=1 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 2.797e-27
Identity = 68/184 (36.96%), Postives = 104/184 (56.52%), Query Frame = 3
Query:    9 LASHAPSAMSAESTTAINRSIVDLLDFIDWSGVECLNHNTAHSLPNAIKQGYREDEGLYLESDADEQLLIYLPFTQVVKLHSIVVKGPEE-EGPKTVKLFSNREH-MGFSNVNDFPPSDTAVLTPDNLKGKPVV-LKFVKFQNVRSLTIFIEDNQSGSEVTKVDKIALFGTTVETTDMKGLKKI 551
            +  H  +   +   T I +  +DL+ FI+ +G ECLN +  H   N +++     +  +LESD DEQLLI + F Q VKL+S+  +GP+  +GPK VK+F N    M F       P+    LT D++K   +V L++VKFQNV S+TIF++ NQ   E T++      GT V+ T+M   K++
Sbjct:  103 IKQHLENDPGSNEDTDIPKGYMDLMPFINKAGCECLNESDEHGFDNCLRK-----DTTFLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQNVNSVTIFVQSNQGEEETTRISYFTFIGTPVQATNMNDFKRV 281          
BLAST of CX675850 vs. ExPASy Swiss-Prot
Match: TXNL1_RAT (Thioredoxin-like protein 1 OS=Rattus norvegicus GN=Txnl1 PE=1 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 8.139e-27
Identity = 67/184 (36.41%), Postives = 103/184 (55.98%), Query Frame = 3
Query:    9 LASHAPSAMSAESTTAINRSIVDLLDFIDWSGVECLNHNTAHSLPNAIKQGYREDEGLYLESDADEQLLIYLPFTQVVKLHSIVVKGPEE-EGPKTVKLFSNREH-MGFSNVNDFPPSDTAVLTPDNLKGKPVV-LKFVKFQNVRSLTIFIEDNQSGSEVTKVDKIALFGTTVETTDMKGLKKI 551
            +  H  +   +   T I +  +DL+ FI+ +G ECLN +  H   N +++        +LESD DEQLLI + F Q VKL+S+  +GP+  +GPK VK+F N    M F       P+    LT D++K   +V L++VKFQNV S+T+F++ NQ   E T++      GT V+ T+M   K++
Sbjct:  103 IKQHLENDPGSNEDTDIPKGYMDLMPFINKAGCECLNESDEHGFDNCLRKDLS-----FLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQNVNSVTLFVQSNQGEEETTRISYFTFIGTPVQATNMNDFKRV 281          
BLAST of CX675850 vs. ExPASy Swiss-Prot
Match: TXNL1_MOUSE (Thioredoxin-like protein 1 OS=Mus musculus GN=Txnl1 PE=1 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 3.093e-26
Identity = 66/184 (35.87%), Postives = 102/184 (55.43%), Query Frame = 3
Query:    9 LASHAPSAMSAESTTAINRSIVDLLDFIDWSGVECLNHNTAHSLPNAIKQGYREDEGLYLESDADEQLLIYLPFTQVVKLHSIVVKGPEE-EGPKTVKLFSNREH-MGFSNVNDFPPSDTAVLTPDNLKGKPVV-LKFVKFQNVRSLTIFIEDNQSGSEVTKVDKIALFGTTVETTDMKGLKKI 551
            +  H  +   +     I +  +DL+ FI+ +G ECLN +  H   N +++        +LESD DEQLLI + F Q VKL+S+  +GP+  +GPK VK+F N    M F       P+    LT D++K   +V L++VKFQNV S+T+F++ NQ   E T++      GT V+ T+M   K++
Sbjct:  103 IKQHLENDPGSNEDADIPKGYMDLMPFINKAGCECLNESDEHGFDNCLRKDMS-----FLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQNVNSVTLFVQSNQGEEETTRISYFTFIGTPVQATNMNDFKRV 281          
BLAST of CX675850 vs. ExPASy Swiss-Prot
Match: TXL1_SCHPO (Thioredoxin-like protein 1 OS=Schizosaccharomyces pombe GN=txl1 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.180e-23
Identity = 66/178 (37.08%), Postives = 94/178 (52.81%), Query Frame = 3
Query:   39 AESTTAINRSIVDLLDFIDWSGVECLNHNTAHSLPNAIKQGYREDEGLYLESDADEQLLIYLPFTQVVKLHSIV---VKGPEEEGPKTVKLFSNR-EHMGFSNVNDFPPSDTAVLTPDNLKGKPVV--LKFVKFQNVRSLTIFIEDNQSGSEVTKVDKIALFGTTVETTDMKGLKKIE 554
            A S++A  +    L   I+   +ECLN    H L    K  +  +   +LESD DEQL+IY+PF +VVK+HSI    VKG     PKT+KL+ N+  ++ F +   F P+            +P +  L+FVKFQ V SL IFI  N    E TK+ ++ LFG  V  +    L+K+E
Sbjct:  116 ASSSSAPVKGFASLQGCIENPQLECLNQQDDHDL----KSAFNSNPSSFLESDVDEQLMIYIPFLEVVKVHSIAITPVKGETSSAPKTIKLYINQPNNLSFEDAESFTPTQVIEDIVYEQDDQPTIIPLRFVKFQRVNSLVIFIYSNVGEEETTKISRLELFGEPVGDSSKGKLQKVE 289          
BLAST of CX675850 vs. ExPASy Swiss-Prot
Match: U424_DROME (UPF0424 protein CG6153 OS=Drosophila melanogaster GN=CG6153 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.736e-13
Identity = 51/146 (34.93%), Postives = 72/146 (49.32%), Query Frame = 3
Query:   90 IDWSGVECLNHNTAHSLPNAIKQ-GYREDEGLYLESDADEQLLIYLPFTQVVKLHSIVVKGPEEEG-PKTVKLFSNREHMGFSNVNDFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSGSEVTKVDKIALFGTTVE 521
            ID   VECLN  T     +  K    R+D   Y+ESDADE+LL  +PFT  +KL  I++ G  ++  P  VK+F NR  M F +    P  +   LT D         K V F +V  L+++   N  G ++T++  I L G   E
Sbjct:   35 IDLDNVECLNEETDGQGKSVFKPYEKRQDLSKYVESDADEELLFNIPFTGNIKLKGIIISGANDDSHPNMVKIFKNRPRMTFDDARAKPDQEFQ-LTRDARGEIEYSPKVVTFSSVHHLSLYFPSN-FGEDITRIYYIGLRGEFTE 178          
BLAST of CX675850 vs. ExPASy Swiss-Prot
Match: CA128_HUMAN (UPF0424 protein C1orf128 OS=Homo sapiens GN=C1orf128 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.670e-11
Identity = 50/146 (34.25%), Postives = 71/146 (48.63%), Query Frame = 3
Query:   90 IDWSGVECLNHNTAHSLPNAIKQGY-REDEGLYLESDADEQLLIYLPFTQVVKLHSIVVKGPEEEG-PKTVKLFSNREHMGFSNVNDFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSGSEVTKVDKIALFGTTVE 521
            ID   ++CLN +   S     K    R D   ++ESDADE+LL  +PFT  VKL  I++ G +++  P  ++L+ N   M F +  +  P  T  L  D         K  +F NV  L+I I  N  G++ TKV  I L G   E
Sbjct:   35 IDLERLQCLNESREGSGRGVFKPWEERTDRSKFVESDADEELLFNIPFTGNVKLKGIIIMGEDDDSHPSEMRLYKNIPQMSFDD-TEREPDQTFSLNRDLTGELEYATKISRFSNVYHLSIHISKN-FGADTTKVFYIGLRGEWTE 178          
BLAST of CX675850 vs. ExPASy Swiss-Prot
Match: CA128_MOUSE (UPF0424 protein C1orf128 homolog OS=Mus musculus GN=Trp26 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.261e-11
Identity = 48/146 (32.88%), Postives = 71/146 (48.63%), Query Frame = 3
Query:   90 IDWSGVECLNHNTAHSLPNAIKQGY-REDEGLYLESDADEQLLIYLPFTQVVKLHSIVVKGPEEEG-PKTVKLFSNREHMGFSNVNDFPPSDTAVLTPDNLKGKPVVLKFVKFQNVRSLTIFIEDNQSGSEVTKVDKIALFGTTVE 521
            ID   ++CLN +   S     K    R D   ++ESDADE+LL  +PFT  VKL  +++ G +++  P  ++L+ N   M F +  +  P  T  L  D         K  +F NV  L+I I  N  G++ TK+  I L G   E
Sbjct:   35 IDLERLQCLNESREGSGRGVFKPWEERTDRSKFVESDADEELLFNIPFTGNVKLKGVIIMGEDDDSHPSEMRLYKNIPQMSFDD-TEREPEQTFSLNRDITGELEYATKISRFSNVYHLSIHISKN-FGADTTKIFYIGLRGEWTE 178          
The following BLAST results are available for this feature:
BLAST of CX675850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
Y3478_ARATH1.414e-7982.39UPF0424 protein At3g04780 OS=Arabidopsis thaliana ... [more]
TXNL1_HUMAN2.797e-2736.96Thioredoxin-like protein 1 OS=Homo sapiens GN=TXNL... [more]
TXNL1_RAT8.139e-2736.41Thioredoxin-like protein 1 OS=Rattus norvegicus GN... [more]
TXNL1_MOUSE3.093e-2635.87Thioredoxin-like protein 1 OS=Mus musculus GN=Txnl... [more]
TXL1_SCHPO4.180e-2337.08Thioredoxin-like protein 1 OS=Schizosaccharomyces ... [more]
U424_DROME8.736e-1334.93UPF0424 protein CG6153 OS=Drosophila melanogaster ... [more]
CA128_HUMAN3.670e-1134.25UPF0424 protein C1orf128 OS=Homo sapiens GN=C1orf1... [more]
CA128_MOUSE6.261e-1132.88UPF0424 protein C1orf128 homolog OS=Mus musculus G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_65C02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-65C02-F3-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675850 ID=CX675850; Name=CX675850; organism=Citrus sinensis; type=EST; length=807bp
AATCCTCACTCGCAAGTCACGCCCCATCAGCCATGTCTGCTGAATCAACC
ACGGCAATTAACAGAAGCATAGTTGATCTATTGGACTTCATAGACTGGTC
TGGAGTTGAGTGCCTTAACCATAATACTGCTCATTCTCTTCCCAATGCAA
TCAAACAGGGTTACAGAGAAGATGAGGGTTTGTATCTGGAAAGTGATGCA
GATGAGCAACTTCTGATATATCTTCCTTTTACCCAAGTTGTGAAGCTTCA
TTCCATTGTCGTCAAAGGACCTGAAGAGGAAGGTCCTAAGACGGTGAAAC
TTTTCTCAAACAGAGAACATATGGGATTCAGCAATGTCAATGATTTCCCT
CCAAGTGACACAGCTGTTTTGACCCCGGATAATCTCAAGGGAAAACCAGT
AGTCTTGAAGTTTGTCAAGTTTCAGAATGTTCGTAGTTTGACAATATTTA
TTGAGGACAATCAGTCAGGTTCTGAAGTCACAAAAGTTGACAAGATTGCA
CTTTTTGGAACGACGGTTGAAACAACAGATATGAAGGGCTTGAAGAAGAT
CGAGGACAATCACTGATCCTGGCAAAAGCAAATATGAAATGAAATGAATG
AGAGAACCCATATTGGCCTCCTGAAAGAAGTGTTAAACATCTTCAGCTTT
ATCTAAACTTCAGTTAATCCGAAGTATTAAACACTTTGCTGCATGATTTA
AAAAAAAAAAAGTTTCATCTCATTGTCCCAAGTTTTTTCTTTGGCAATCA
TATCATCTATGTGATTGAATGAGGTTACATTCAAGTTCTGTTGTGTTCTG
ACAATTT
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