CN181725

Overview
NameCN181725
Unique NameCN181725
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length362
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181725 vs. ExPASy Swiss-Prot
Match: SYM_ARATH (Probable methionyl-tRNA synthetase OS=Arabidopsis thaliana GN=At4g13780 PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 7.390e-59
Identity = 99/120 (82.50%), Postives = 108/120 (90.00%), Query Frame = 3
Query:    3 TATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDP 362
            TATETKA+E+NC+PKEICDKYH IHK+VY WF ISFD FGRTSTP+QTE CQAIF KL DN WL ENTMQQ YCDTCK+FLADRLVEG+CPFEGCNY+SARGDQCE CGKLLN T+LKDP
Sbjct:   69 TATETKALEENCTPKEICDKYHAIHKEVYDWFGISFDKFGRTSTPEQTEVCQAIFNKLWDNKWLSENTMQQLYCDTCKKFLADRLVEGSCPFEGCNYDSARGDQCEKCGKLLNPTELKDP 188          
BLAST of CN181725 vs. ExPASy Swiss-Prot
Match: SYM_ORYSJ (Probable methionyl-tRNA synthetase OS=Oryza sativa subsp. japonica GN=Os06g0508700 PE=2 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 8.171e-58
Identity = 97/120 (80.83%), Postives = 107/120 (89.17%), Query Frame = 3
Query:    3 TATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDP 362
            TATETKAME+ CSPKEICDKYH +H +VYKWFDI FD FGRTS+PQQTE CQAIF+KL++NNWL ENTMQQ YCDTC+RFLADRLVEG CP EGCNYE+ARGDQCENC KLLN T+L DP
Sbjct:   68 TATETKAMEEKCSPKEICDKYHAVHSEVYKWFDIKFDKFGRTSSPQQTEVCQAIFQKLMENNWLTENTMQQLYCDTCQRFLADRLVEGKCPTEGCNYEAARGDQCENCSKLLNPTELIDP 187          
BLAST of CN181725 vs. ExPASy Swiss-Prot
Match: SYMC_BOVIN (Methionyl-tRNA synthetase, cytoplasmic OS=Bos taurus GN=MARS PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 1.654e-42
Identity = 76/120 (63.33%), Postives = 97/120 (80.83%), Query Frame = 3
Query:    3 TATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDP 362
            TATETKAME+  +P+EICDKYHVIH D+Y+WF+ISFD FGRT+TPQQT+  Q IF++LL   +++++T++Q  C+ C RFLADR VEG CPF  C YE ARGDQC+ CGKL+NA +LK P
Sbjct:  316 TATETKAMEEGLTPQEICDKYHVIHADIYRWFNISFDFFGRTTTPQQTKITQDIFQRLLARGFVLQDTVEQLRCEHCARFLADRFVEGVCPF--CGYEEARGDQCDKCGKLINAIELKKP 433          
BLAST of CN181725 vs. ExPASy Swiss-Prot
Match: SYMC_MOUSE (Methionyl-tRNA synthetase, cytoplasmic OS=Mus musculus GN=Mars PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 2.821e-42
Identity = 75/120 (62.50%), Postives = 94/120 (78.33%), Query Frame = 3
Query:    3 TATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDP 362
            TATETKAME+  +P+EICDKYH IH D+Y+WF ISFD FGRT+TPQQT+  Q IF++LL   +++ +T++Q  C+ C RFLADR VEG CPF  C YE ARGDQC+ CGKL+NA +LK P
Sbjct:  318 TATETKAMEEGLTPREICDKYHAIHADIYRWFGISFDTFGRTTTPQQTKITQDIFQRLLTRGFVLRDTVEQLRCERCARFLADRFVEGVCPF--CGYEEARGDQCDRCGKLINAIELKKP 435          
BLAST of CN181725 vs. ExPASy Swiss-Prot
Match: SYMC_HUMAN (Methionyl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=MARS PE=1 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 3.685e-42
Identity = 74/120 (61.67%), Postives = 97/120 (80.83%), Query Frame = 3
Query:    3 TATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDP 362
            TATETKA+E+  +P+EICDKYH+IH D+Y+WF+ISFD FGRT+TPQQT+  Q IF++LL   +++++T++Q  C+ C RFLADR VEG CPF  C YE ARGDQC+ CGKL+NA +LK P
Sbjct:  316 TATETKALEEGLTPQEICDKYHIIHADIYRWFNISFDIFGRTTTPQQTKITQDIFQQLLKRGFVLQDTVEQLRCEHCARFLADRFVEGVCPF--CGYEEARGDQCDKCGKLINAVELKKP 433          
BLAST of CN181725 vs. ExPASy Swiss-Prot
Match: SYM_TREDE (Methionyl-tRNA synthetase OS=Treponema denticola GN=metG PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.074e-41
Identity = 75/120 (62.50%), Postives = 94/120 (78.33%), Query Frame = 3
Query:    3 TATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDP 362
            TATETKA+E+  SP+E+C  YH IH ++Y WF+I+FD FGRTSTPQQTE  Q IF  L  N ++ E+T++Q YC +CKRFLADR V GTCP   C+Y+ ARGDQCE+CGKLL+ TDLK+P
Sbjct:   53 TATETKALEEKKSPEELCSFYHAIHAEIYNWFNIAFDYFGRTSTPQQTEITQGIFNDLDKNGYITEHTIEQLYCPSCKRFLADRYVLGTCP--SCSYDGARGDQCEHCGKLLDPTDLKEP 170          
BLAST of CN181725 vs. ExPASy Swiss-Prot
Match: SYMC_DICDI (Probable methionyl-tRNA synthetase, cytoplasmic OS=Dictyostelium discoideum GN=metS PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.185e-40
Identity = 75/121 (61.98%), Postives = 92/121 (76.03%), Query Frame = 3
Query:    3 TATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCD-TCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDP 362
            TATETKA+ + C+PKEICDKYH IHK++Y+WF+ISFD FGRTST  QTE  Q IF K+ DN + +   ++Q YC+ TCK FLADR VEGTCP   C +E ARGDQC+ C KLLN T+L +P
Sbjct:   68 TATETKALSEGCTPKEICDKYHEIHKEIYEWFNISFDKFGRTSTNSQTEIAQDIFNKIKDNGYTLTQEIEQLYCEQTCKMFLADRFVEGTCPH--CKFEDARGDQCDGCSKLLNPTELINP 186          
BLAST of CN181725 vs. ExPASy Swiss-Prot
Match: SYMC_XENLA (Methionyl-tRNA synthetase, cytoplasmic OS=Xenopus laevis GN=mars PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.712e-39
Identity = 72/120 (60.00%), Postives = 93/120 (77.50%), Query Frame = 3
Query:    3 TATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDP 362
            TATETKAME+  +P++ICDKY+ IH  +Y+WF+ISFD FGRT+T  QT   Q IF +LL+  +L+ +T++Q  C+ C+RFLADR VEG CPF  CNYE ARGDQC+ CGKL+NA +LK P
Sbjct:  314 TATETKAMEEGLTPQQICDKYNAIHTAIYQWFNISFDYFGRTTTQHQTTISQDIFHRLLEREFLLTDTVEQLRCEKCQRFLADRFVEGICPF--CNYEEARGDQCDKCGKLINAVELKKP 431          
BLAST of CN181725 vs. ExPASy Swiss-Prot
Match: SYMC_CAEEL (Methionyl-tRNA synthetase, cytoplasmic OS=Caenorhabditis elegans GN=mrs-1 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.712e-39
Identity = 69/119 (57.98%), Postives = 89/119 (74.79%), Query Frame = 3
Query:    3 TATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKD 359
            TATETKA+++ C+P+E+CDKYH IHK +Y+WF I F +FGRT+T  QTE CQ +F KL  N +    ++ Q YC+ C++FLADR V GTCP   C Y+ ARGDQC+ CGKL+NA DLKD
Sbjct:   87 TATETKALQEGCTPRELCDKYHAIHKGIYEWFGIDFSHFGRTTTDHQTEICQDMFLKLHKNGYTSSQSVDQLYCNQCEKFLADRFVTGTCPM--CAYDDARGDQCDGCGKLINAVDLKD 203          
BLAST of CN181725 vs. ExPASy Swiss-Prot
Match: SYMC_SCHPO (Probable methionyl-tRNA synthetase, cytoplasmic OS=Schizosaccharomyces pombe GN=SPBC17A3.04c PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 6.504e-39
Identity = 72/120 (60.00%), Postives = 92/120 (76.67%), Query Frame = 3
Query:    3 TATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDP 362
            TATETKA+E+  SPKE+CDKYH +HK+VY WF+I FD+FGRT+TP+QT   Q IF KL +N+++  +TM Q YC+  + +LADR VEGTCP   C Y+ ARGDQC+ CG LLNA +L DP
Sbjct:  274 TATETKALEEGVSPKELCDKYHALHKEVYDWFEIDFDHFGRTTTPKQTGIAQHIFTKLYNNDYMAIDTMTQLYCEVHQGYLADRYVEGTCP--KCGYDDARGDQCDGCGGLLNAFELIDP 391          
The following BLAST results are available for this feature:
BLAST of CN181725 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 349
Match NameE-valueIdentityDescription
SYM_ARATH7.390e-5982.50Probable methionyl-tRNA synthetase OS=Arabidopsis ... [more]
SYM_ORYSJ8.171e-5880.83Probable methionyl-tRNA synthetase OS=Oryza sativa... [more]
SYMC_BOVIN1.654e-4263.33Methionyl-tRNA synthetase, cytoplasmic OS=Bos taur... [more]
SYMC_MOUSE2.821e-4262.50Methionyl-tRNA synthetase, cytoplasmic OS=Mus musc... [more]
SYMC_HUMAN3.685e-4261.67Methionyl-tRNA synthetase, cytoplasmic OS=Homo sap... [more]
SYM_TREDE4.074e-4162.50Methionyl-tRNA synthetase OS=Treponema denticola G... [more]
SYMC_DICDI1.185e-4061.98Probable methionyl-tRNA synthetase, cytoplasmic OS... [more]
SYMC_XENLA1.712e-3960.00Methionyl-tRNA synthetase, cytoplasmic OS=Xenopus ... [more]
SYMC_CAEEL1.712e-3957.98Methionyl-tRNA synthetase, cytoplasmic OS=Caenorha... [more]
SYMC_SCHPO6.504e-3960.00Probable methionyl-tRNA synthetase, cytoplasmic OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001G05_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181725 ID=CN181725; Name=CN181725; organism=Citrus sinensis; type=EST; length=362bp
GAACGGCGACCGAAACAAAGGCAATGGAAGATAATTGCAGTCCTAAAGAA
ATTTGTGACAAATATCATGTTATTCATAAGGATGTCTATAAGTGGTTCGA
CATAAGTTTTGATAATTTTGGACGGACATCAACTCCGCAACAGACTGAAG
CGTGCCAAGCAATTTTCAAAAAGTTGTTGGATAACAACTGGCTTATAGAG
AACACCATGCAACAACCTTATTGCGACACATGCAAAAGGTTCTTAGCTGA
CCGACTTGTCGAGGGTACTTGTCCATTTGAAGGATGTAATTATGAGTCTG
CCCGAGGGGATCAATGTGAAAACTGCGGAAAGCTTTTGAATGCAACAGAC
TTGAAAGATCCT
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