CN181724
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN181724 vs. ExPASy Swiss-Prot
Match: SYM_ORYSJ (Probable methionyl-tRNA synthetase OS=Oryza sativa subsp. japonica GN=Os06g0508700 PE=2 SV=2) HSP 1 Score: 164.466 bits (415), Expect = 9.503e-46 Identity = 77/106 (72.64%), Postives = 86/106 (81.13%), Query Frame = -1 Query: 224 CVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVAFPGFEGEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVSSIQSGSIR 541 CVLCNLKPVAMRGIKSHAMVL AS D+TKVELVEPP+SA +GERV F G+ GEP+ LN K K WE + DLH+N ELVACYKD+PFTTSAG+C V SI SG IR Sbjct: 696 CVLCNLKPVAMRGIKSHAMVLAASNEDHTKVELVEPPESAAVGERVTFAGYSGEPEASLNAKSKTWEKLSADLHSNGELVACYKDVPFTTSAGVCKVKSIASGEIR 801 HSP 2 Score: 38.891 bits (89), Expect = 9.503e-46 Identity = 21/28 (75.00%), Postives = 23/28 (82.14%), Query Frame = -3 Query: 528 RTVVSGLVKHIPLEEMQER--MVLCSLQ 605 RTVVSGLVK IPLEEMQ R VLC+L+ Sbjct: 675 RTVVSGLVKFIPLEEMQNRKVCVLCNLK 702
BLAST of CN181724 vs. ExPASy Swiss-Prot
Match: SYM_ARATH (Probable methionyl-tRNA synthetase OS=Arabidopsis thaliana GN=At4g13780 PE=2 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 8.358e-43 Identity = 83/115 (72.17%), Postives = 94/115 (81.74%), Query Frame = -1 Query: 224 LKRCRREWSCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVAFPGFEGEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVSSIQSGSIR 568 L+ + CVLCNLKP MR I S AMVL AS+SD +KVELVEPPK+A IGERV FPGFEGEPDDVLNPKKKVWET+ VDL+T LVACYKD+PFTTSAG+C VSSI +G+IR Sbjct: 683 LEEMQNRMVCVLCNLKPAKMRDIVSQAMVLAASSSDGSKVELVEPPKTANIGERVTFPGFEGEPDDVLNPKKKVWETLLVDLNTKENLVACYKDVPFTTSAGVCKVSSISNGTIR 797
BLAST of CN181724 vs. ExPASy Swiss-Prot
Match: AIMP1_CRIGR (Aminoacyl tRNA synthetase complex-interacting multifunctional protein 1 OS=Cricetulus griseus GN=AIMP1 PE=2 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.389e-30 Identity = 54/106 (50.94%), Postives = 70/106 (66.04%), Query Frame = -1 Query: 224 VLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVAFPGFEGEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSA-GICTVSSIQSGSIR 538 +LCNLKP MRGI S AMV+CAS+ + KVE++ PP + G+R+ F F GEPD LNPKKK+WE +Q DLHTN E VA YK PF G+C ++ + I+ Sbjct: 256 LLCNLKPAKMRGILSQAMVMCASSPE--KVEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNAECVATYKGSPFEVKGKGVCRAQTMANSGIK 359 HSP 2 Score: 39.6614 bits (91), Expect = 1.389e-30 Identity = 18/28 (64.29%), Postives = 24/28 (85.71%), Query Frame = -3 Query: 528 RTVVSGLVKHIPLEEMQERMV--LCSLQ 605 RTV+SGLV H+PL++MQ RMV LC+L+ Sbjct: 234 RTVISGLVNHVPLDQMQNRMVVLLCNLK 261
BLAST of CN181724 vs. ExPASy Swiss-Prot
Match: AIMP1_HUMAN (Aminoacyl tRNA synthetase complex-interacting multifunctional protein 1 OS=Homo sapiens GN=AIMP1 PE=1 SV=2) HSP 1 Score: 114.775 bits (286), Expect = 3.528e-25 Identity = 53/116 (45.69%), Postives = 75/116 (64.66%), Query Frame = -1 Query: 224 LKRCRREWSCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVAFPGFEGEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSA-GICTVSSIQSGSIR 568 L++ + +LCNLKP MRG+ S AMV+CAS+ + K+E++ PP + G+R+ F F GEPD LNPKKK+WE +Q DLHTN E VA YK +PF G+C ++ + I+ Sbjct: 199 LEQMQNRMVILLCNLKPAKMRGVLSQAMVMCASSPE--KIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNDECVATYKGVPFEVKGKGVCRAQTMSNSGIK 312
BLAST of CN181724 vs. ExPASy Swiss-Prot
Match: AIMP1_MOUSE (Aminoacyl tRNA synthetase complex-interacting multifunctional protein 1 OS=Mus musculus GN=Aimp1 PE=1 SV=2) HSP 1 Score: 113.62 bits (283), Expect = 7.859e-25 Identity = 54/116 (46.55%), Postives = 74/116 (63.79%), Query Frame = -1 Query: 224 LKRCRREWSCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVAFPGFEGEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSA-GICTVSSIQSGSIR 568 L++ + +LCNLKP MRG+ S AMV+CAS+ + KVE++ PP + G+R+ F F GEPD LNPKKK+WE +Q DLHTN E VA YK PF G+C ++ + I+ Sbjct: 197 LEQMQNRMVVLLCNLKPAKMRGVLSQAMVMCASSPE--KVEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNAECVATYKGAPFEVKGKGVCRAQTMANSGIK 310
BLAST of CN181724 vs. ExPASy Swiss-Prot
Match: SYYC_BOVIN (Tyrosyl-tRNA synthetase, cytoplasmic OS=Bos taurus GN=YARS PE=2 SV=4) HSP 1 Score: 94.3597 bits (233), Expect = 6.063e-24 Identity = 50/106 (47.17%), Postives = 67/106 (63.21%), Query Frame = -1 Query: 227 VLCNLKPVAMRGIKSHAMVLCASTSD-NTKVELVEPPKSAKIGERVAFPGFE-GEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVSSIQSGSI 538 VLCNLKP MRG+KS M+LCAS N KVE ++PP + GERV G+E G+PD+ L PKKKV+E +Q D + E +A +K F T G + S++ G+I Sbjct: 422 VLCNLKPQKMRGVKSQGMLLCASVEGVNRKVEPLDPPAGSAPGERVFVKGYEKGQPDEELKPKKKVFEKLQADFKISDEYIAQWKQTNFMTKMGSVSCKSLKGGNI 527 HSP 2 Score: 35.8094 bits (81), Expect = 6.063e-24 Identity = 17/30 (56.67%), Postives = 25/30 (83.33%), Query Frame = -3 Query: 522 RTVVSGLVKHIPLEEMQERM--VLCSLQSE 605 RTVVSGLV+ +P EE+Q+R+ VLC+L+ + Sbjct: 400 RTVVSGLVQFVPKEELQDRLVVVLCNLKPQ 429
BLAST of CN181724 vs. ExPASy Swiss-Prot
Match: SYMC_CAEEL (Methionyl-tRNA synthetase, cytoplasmic OS=Caenorhabditis elegans GN=mrs-1 PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 3.796e-23 Identity = 45/86 (52.33%), Postives = 57/86 (66.28%), Query Frame = -1 Query: 281 VLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVAFPGFEGEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIP 538 VLCNLKP MRG++S AMV+CAS+ D KVE++E P +K G V P + PD+ LNPKKK+WETV DL + E A +K P Sbjct: 814 VLCNLKPAKMRGVESRAMVMCASSPD--KVEIMEVPADSKPGTPVVCPPYTHRPDEQLNPKKKIWETVAEDLKVSAEGFAEWKGQP 897 HSP 2 Score: 39.6614 bits (91), Expect = 3.796e-23 Identity = 18/28 (64.29%), Postives = 25/28 (89.29%), Query Frame = -3 Query: 528 RTVVSGLVKHIPLEEMQERM--VLCSLQ 605 RTVVSGLV+H+PL++MQ R+ VLC+L+ Sbjct: 792 RTVVSGLVRHVPLDQMQNRLVVVLCNLK 819
BLAST of CN181724 vs. ExPASy Swiss-Prot
Match: SYYC_DANRE (Tyrosyl-tRNA synthetase, cytoplasmic OS=Danio rerio GN=yars PE=2 SV=2) HSP 1 Score: 95.1301 bits (235), Expect = 4.983e-23 Identity = 52/106 (49.06%), Postives = 71/106 (66.98%), Query Frame = -1 Query: 227 VLCNLKPVAMRGIKSHAMVLCASTS-DNTKVELVEPPKSAKIGERVAFPGFE-GEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVSSIQSGSI 538 +LCNLKP MRGI+S AMVLCAS + KVE ++PP+ + G+RV G+E G+PDD L PKKKV+E +QVDL + E VA +K+ T G T +++ G+I Sbjct: 423 LLCNLKPQKMRGIESQAMVLCASIEGEPRKVEPLDPPEGSAAGDRVYVEGYESGKPDDELKPKKKVFEKLQVDLKISGEFVAQWKEQNLMTKLGRITCKTLKGGNI 528 HSP 2 Score: 31.9574 bits (71), Expect = 4.983e-23 Identity = 16/30 (53.33%), Postives = 24/30 (80.00%), Query Frame = -3 Query: 522 RTVVSGLVKHIPLEEMQERMV--LCSLQSE 605 RTVVSGLV +I E++Q+R+V LC+L+ + Sbjct: 401 RTVVSGLVAYITEEQLQDRLVVLLCNLKPQ 430
BLAST of CN181724 vs. ExPASy Swiss-Prot
Match: SYYC_CHICK (Tyrosyl-tRNA synthetase, cytoplasmic OS=Gallus gallus GN=YARS PE=2 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 4.983e-23 Identity = 49/106 (46.23%), Postives = 68/106 (64.15%), Query Frame = -1 Query: 227 VLCNLKPVAMRGIKSHAMVLCAST-SDNTKVELVEPPKSAKIGERVAFPGFE-GEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVSSIQSGSI 538 +LCNLKP MRG++S MVLCAS+ + +VE ++PP GERV G+E GEPDD L PKKKV+E +Q D + + +A +K+ F T G + S++ GSI Sbjct: 421 LLCNLKPQKMRGVESQGMVLCASSVGEPRQVEPLDPPAECCAGERVYVEGYEDGEPDDELKPKKKVFEKLQADFRISEDCIAQWKERNFLTKLGSISCKSLKGGSI 526 HSP 2 Score: 34.6538 bits (78), Expect = 4.983e-23 Identity = 16/30 (53.33%), Postives = 25/30 (83.33%), Query Frame = -3 Query: 522 RTVVSGLVKHIPLEEMQERMV--LCSLQSE 605 RTVVSGLV+ +P E++Q+R+V LC+L+ + Sbjct: 399 RTVVSGLVQFVPKEQLQDRLVVLLCNLKPQ 428
BLAST of CN181724 vs. ExPASy Swiss-Prot
Match: SYYC_PONAB (Tyrosyl-tRNA synthetase, cytoplasmic OS=Pongo abelii GN=YARS PE=2 SV=3) HSP 1 Score: 90.8929 bits (224), Expect = 6.483e-23 Identity = 48/106 (45.28%), Postives = 67/106 (63.21%), Query Frame = -1 Query: 227 VLCNLKPVAMRGIKSHAMVLCASTSD-NTKVELVEPPKSAKIGERVAFPGFE-GEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVSSIQSGSI 538 VLCNLKP MRG++S M+LCAS N +VE ++PP + GERV G+E G+PD+ L PKKKV+E +Q D + E +A +K F T G + S++ G+I Sbjct: 422 VLCNLKPQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGERVFVKGYEKGQPDEELKPKKKVFEKLQADFKISEECIAQWKQTNFMTKLGSISCKSLKGGNI 527 HSP 2 Score: 35.8094 bits (81), Expect = 6.483e-23 Identity = 17/30 (56.67%), Postives = 25/30 (83.33%), Query Frame = -3 Query: 522 RTVVSGLVKHIPLEEMQERM--VLCSLQSE 605 RTVVSGLV+ +P EE+Q+R+ VLC+L+ + Sbjct: 400 RTVVSGLVQFVPKEELQDRLVVVLCNLKPQ 429 The following BLAST results are available for this feature:
BLAST of CN181724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 17
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Sequences
The
following sequences are available for this feature:
EST sequence >CN181724 ID=CN181724; Name=CN181724; organism=Citrus sinensis; type=EST; length=607bpback to top |