CN181659

Overview
NameCN181659
Unique NameCN181659
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1201 contig Csv1_Contig1201:689..1282. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN181659 vs. ExPASy Swiss-Prot
Match: YOOF_SCHPO (Uncharacterized hydroxylase C887.15c OS=Schizosaccharomyces pombe GN=SPBC887.15c PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 8.753e-34
Identity = 59/103 (57.28%), Postives = 77/103 (74.76%), Query Frame = -2 
Query:  285 VPYAFGALYNHPIEGLLNDTIGGALSFLVSGMSPRVSIFFFSFATIKTVDDHCGLWLPGNLFHVFFKNNTAYHDIHHQLYGSKYNFAQPFFVMWDRILGTYMP 593
            VPYA GALYNHP EGL+ DT G  +++L +G+SP+ ++ FF+ +T+KTVDDHCG   P +   +FF NN  YHD+HHQ YG + NF+QPFF  WD +LGTYMP
Sbjct:  171 VPYAMGALYNHPFEGLILDTFGAGVAYLAAGLSPQQAVIFFTLSTLKTVDDHCGYVFPYDPLQMFFANNARYHDLHHQPYGFQKNFSQPFFTFWDHVLGTYMP 273
[Close]
BLAST of CN181659 vs. ExPASy Swiss-Prot
Match: SUR2_YEAST (Sphingolipid C4-hydroxylase SUR2 OS=Saccharomyces cerevisiae GN=SUR2 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.373e-28
Identity = 62/131 (47.33%), Postives = 79/131 (60.31%), Query Frame = -2 
Query:  204 VPYAFGALYNHPIEGLLNDTIGGALSFLVSGMSPRVSIFFFSFATIKTVDDHCGLWLPGNLFHVFFKNNTAYHDIHHQLYGSKYNFAQPFFVMWDRILGTYMPYSLEKRPDGGFEALATKDYNQTKD-YKD 593
            VPYA+GAL+N+P+EG L DT+G  ++  ++ ++ R  I  F+FAT+KTVDDHCG  LP + F   F NN  YHDIHHQ +G K NFAQPFF  WD +  T            GFE    K    T D YK+
Sbjct:  198 VPYAYGALFNNPVEGFLLDTLGTGIAMTLTHLTHREQIILFTFATMKTVDDHCGYALPLDPFQWLFPNNAVYHDIHHQQFGIKTNFAQPFFTFWDNLFQTNFK---------GFEEYQKKQRRVTIDKYKE 319
The following BLAST results are available for this feature:
BLAST of CN181659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
YOOF_SCHPO8.753e-3457.28Uncharacterized hydroxylase C887.15c OS=Schizosacc... [more]
SUR2_YEAST9.373e-2847.33Sphingolipid C4-hydroxylase SUR2 OS=Saccharomyces ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001E18_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001E18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181659 ID=CN181659; Name=CN181659; organism=Citrus sinensis; type=EST; length=594bp
TGGGACATTAATTTATTTTAATTGTAGCTCAACCTCATTATTTAACTAAT
ATAGACAAAAATGTTGAGAAATATAAAACACAACAATATAGATATGTACA
AATCACAGGGCAGTGTGGCTCATCAGTAAAGGTGAAAAAGAGAAAAAAAA
ATTAAAATTAAATAATGCTAGTACAAACTGATGGTCCTAACGTATAATCA
GTTGTCCTTGTAATCTTTCGTCTGATTGTAATCCTTTGTAGCCAGCGCTT
CAAAGCCACCATCTGGTCTCTTCTCCAGTGAATAGGGCATATAGGTTCCA
AGAATTCTATCCCACATCACGAAGAATGGTTGTGCAAAGTTGTATTTGCT
CCCATAAAGTTGATGGTGGATATCATGATAGGCAGTGTTGTTTTTGAAGA
ACACGTGGAAGAGGTTTCCAGGAAGCCATAATCCACAGTGGTCATCCACT
GTTTTGATGGTGGCAAAGGAAAAGAAAAAGATGGAGACTCGGGGAGACAT
ACCGGAAACGAGAAAAGATAAGGCTCCGCCAATTGTGTCATTAAGAAGCC
CCTCAATGGGGTGATTATACAAAGCTCCAAATGCATAGGGGACA
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