CN188654

Overview
NameCN188654
Unique NameCN188654
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN188654 vs. ExPASy Swiss-Prot
Match: Y5621_ARATH (PHD finger protein At5g26210 OS=Arabidopsis thaliana GN=At5g26210 PE=1 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 3.703e-62
Identity = 117/182 (64.29%), Postives = 130/182 (71.43%), Query Frame = 3 
Query:  165 MDAGGGYNPRTVEEVFGDFKGRRAGMVKALTTEVEEFYHQCDPEKENLCLYGFPSEQWXXXXXXXXXXXXXXXXXXGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDRKRLFNMINELPTIFEVVTGTTKKQAXXXXXXXXXXXXXXXXXXXRGSETQAKFSKAVQSKDE 710
            M+AGG YNPRTVEEVF DFKGRRAGM+KALTT+V+EF+  CDPEKENLCLYG P+E W                  GINFARDGM EKDWLSLVAVHSDAWLL+VAF+FGARFGFDK+DRKRLFNM+N+LPTIFEVV GT KKQ                    RGSE++AKFSK     DE
Sbjct:    1 MEAGGAYNPRTVEEVFRDFKGRRAGMIKALTTDVQEFFRLCDPEKENLCLYGHPNEHWEVNLPAEEVPPELPEPVLGINFARDGMAEKDWLSLVAVHSDAWLLAVAFFFGARFGFDKADRKRLFNMVNDLPTIFEVVAGTAKKQGKDKSSVSNNSSNRSKSSSKRGSESRAKFSKPEPKDDE 182
The following BLAST results are available for this feature:
BLAST of CN188654 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5621_ARATH3.703e-6264.29PHD finger protein At5g26210 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0006I05_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006I05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188654 ID=CN188654; Name=CN188654; organism=Citrus sinensis; type=EST; length=710bp
CGTATAGGTTTTGCTCAACAGTGGTCAAAATATTTTCACCTCTTTCCCTC
CTTTACTCTTACTCTCTCTCACTCTCGCCAATTTCGAACTTCGATCTCTC
TTCTCTGTAAATCTGAAAACAAACAACGAAAAAGAAAAAGGGTGCGAGAG
AATTTGATTCGGTGATGGACGCAGGTGGAGGCTACAATCCGCGTACGGTT
GAAGAAGTTTTTGGCGATTTCAAGGGCCGAAGAGCTGGCATGGTTAAAGC
CCTTACTACTGAGGTTGAAGAGTTTTACCACCAGTGTGACCCTGAGAAGG
AAAATCTTTGCCTCTATGGTTTTCCAAGCGAGCAGTGGGAGGTAAACTTA
CCTGCTGAAGAAGTGCCTCCAGAGCTTCCAGAGCCTGCATTGGGTATCAA
CTTTGCCAGAGATGGGATGCAAGAAAAGGACTGGTTGTCTTTGGTTGCTG
TCCACAGTGATGCTTGGTTACTCTCCGTGGCCTTTTACTTTGGTGCTAGG
TTTGGTTTTGATAAATCTGATAGGAAACGTCTTTTTAATATGATAAATGA
ACTTCCAACAATATTTGAGGTTGTGACAGGGACAACAAAGAAACAGGCAA
AAGAAAAGTCTTCTGTGTCAAATCACAGTAGCAGCAAATCTAAATCAAAC
TCAAAGCGAGGCTCTGAAACTCAAGCCAAGTTTTCAAAGGCAGTGCAATC
AAAGGATGAA
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