CN181589

Overview
NameCN181589
Unique NameCN181589
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN181589_ssr104 microsatellite CN181589_ssr104:104..113. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN181589 vs. ExPASy Swiss-Prot
Match: TF2B_SOYBN (Transcription initiation factor IIB OS=Glycine max GN=TFIIB1 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.319e-53
Identity = 106/122 (86.89%), Postives = 108/122 (88.52%), Query Frame = -3
Query:  320 VKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 685
            VKQLGLE G +VEMGTIHAGDFMRRFCSNL MNN           KSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDIS+ATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP
Sbjct:  192 VKQLGLENGNAVEMGTIHAGDFMRRFCSNLCMNNQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISLATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 313          
BLAST of CN181589 vs. ExPASy Swiss-Prot
Match: TF2B2_ARATH (Transcription initiation factor IIB-2 OS=Arabidopsis thaliana GN=TFIIB2 PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.234e-51
Identity = 104/122 (85.25%), Postives = 107/122 (87.70%), Query Frame = -3
Query:  320 VKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 685
            VKQLGLETGQ VEMGTIHAGDFMRRFCSNLGM N           KSEEFDIRRSPISIAAAVIYIITQLSD+KKPL+DISVATGVAEGTIRNSYKDLYPH+SKIIP WYAKEEDLKNL SP
Sbjct:  191 VKQLGLETGQLVEMGTIHAGDFMRRFCSNLGMTNQTVKAAQESVQKSEEFDIRRSPISIAAAVIYIITQLSDEKKPLRDISVATGVAEGTIRNSYKDLYPHLSKIIPAWYAKEEDLKNLQSP 312          
BLAST of CN181589 vs. ExPASy Swiss-Prot
Match: TF2B1_ARATH (Transcription initiation factor IIB-1 OS=Arabidopsis thaliana GN=TFIIB1 PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.846e-48
Identity = 98/122 (80.33%), Postives = 103/122 (84.43%), Query Frame = -3
Query:  320 VKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 685
            VK LGLE GQSV++GTIHAGDFMRRFCSNL M+N           KSEEFDIRRSPISIAA VIYIITQLSDDKK LKDIS ATGVAEGTIRNSYKDLYPH+SKI P+WYAKEEDLKNL SP
Sbjct:  191 VKTLGLEPGQSVDLGTIHAGDFMRRFCSNLAMSNHAVKAAQEAVQKSEEFDIRRSPISIAAVVIYIITQLSDDKKTLKDISHATGVAEGTIRNSYKDLYPHLSKIAPSWYAKEEDLKNLSSP 312          
BLAST of CN181589 vs. ExPASy Swiss-Prot
Match: TF2B_ORYSJ (Transcription initiation factor IIB OS=Oryza sativa subsp. japonica GN=TFIIB PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.717e-48
Identity = 95/122 (77.87%), Postives = 105/122 (86.07%), Query Frame = -3
Query:  320 VKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 685
            VKQL +E GQS+EMGTIHAGDF+RRFCS LGMNN           +SEE DIRRSPISIAAAVIY+ITQLSDDKKPLKDIS+ATGVAEGTIRNSYKDLYP+ S++IPN YAKEEDLKNLC+P
Sbjct:  191 VKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMNNQAVKAAQEAVQRSEELDIRRSPISIAAAVIYMITQLSDDKKPLKDISLATGVAEGTIRNSYKDLYPYASRLIPNTYAKEEDLKNLCTP 312          
BLAST of CN181589 vs. ExPASy Swiss-Prot
Match: TF2B_DROVI (Transcription initiation factor IIB OS=Drosophila virilis GN=TfIIB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.022e-13
Identity = 43/93 (46.24%), Postives = 56/93 (60.22%), Query Frame = -3
Query:  365 IHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDI--RRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIP 637
            I   DFM RFC+NL + N           K+ E DI   RSPIS+AAA IY+ +Q S+ K+  K+I    GVA+ TIR SYK +YPH +K+ P
Sbjct:  186 ITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDIVPGRSPISVAAAAIYMASQASEHKRSQKEIGDIAGVADVTIRQSYKLMYPHAAKLFP 278          
BLAST of CN181589 vs. ExPASy Swiss-Prot
Match: TF2B_DROME (Transcription initiation factor IIB OS=Drosophila melanogaster GN=TfIIB PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.022e-13
Identity = 43/93 (46.24%), Postives = 56/93 (60.22%), Query Frame = -3
Query:  365 IHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDI--RRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIP 637
            I   DFM RFC+NL + N           K+ E DI   RSPIS+AAA IY+ +Q S+ K+  K+I    GVA+ TIR SYK +YPH +K+ P
Sbjct:  208 ITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDIVPGRSPISVAAAAIYMASQASEHKRSQKEIGDIAGVADVTIRQSYKLMYPHAAKLFP 300          
BLAST of CN181589 vs. ExPASy Swiss-Prot
Match: TF2B_XENLA (Transcription initiation factor IIB OS=Xenopus laevis GN=gtf2b PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.648e-13
Identity = 41/93 (44.09%), Postives = 54/93 (58.06%), Query Frame = -3
Query:  365 IHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDI--RRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIP 637
            I  GDFM RFCSNLG+             K+ E D+   RSPIS+AAA IY+ +Q S +K+  K+I    GVA+ TIR SY+ +YP    + P
Sbjct:  209 ITTGDFMSRFCSNLGLTKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFP 301          
BLAST of CN181589 vs. ExPASy Swiss-Prot
Match: TF2B_DICDI (Transcription initiation factor IIB OS=Dictyostelium discoideum GN=gtf2b PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.606e-12
Identity = 43/105 (40.95%), Postives = 62/105 (59.05%), Query Frame = -3
Query:  362 ETGQSV-EMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDI--RRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPN 667
            ET  SV  + TI + DF  RFCS L + N            + +  I   +SPIS+ AA IY+++QLS +K+  K I+  +GV+E TIRN+YKDLY    ++IP+
Sbjct:  207 ETFASVLNLQTISSEDFTSRFCSTLKLPNDVKKGAEHVSKMAMDMGIVAGKSPISVTAASIYMVSQLSPEKRTQKQIADVSGVSEVTIRNAYKDLYAKRDQLIPS 311          
BLAST of CN181589 vs. ExPASy Swiss-Prot
Match: TF2B_RAT (Transcription initiation factor IIB OS=Rattus norvegicus GN=Gtf2b PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 40/94 (42.55%), Postives = 54/94 (57.45%), Query Frame = -3
Query:  362 IHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDI--RRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPN 637
            I  GDFM RFCSNL +             K+ E D+   RSPIS+AAA IY+ +Q S +K+  K+I    GVA+ TIR SY+ +YP    + P+
Sbjct:  209 ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPS 302          
BLAST of CN181589 vs. ExPASy Swiss-Prot
Match: TF2B_MOUSE (Transcription initiation factor IIB OS=Mus musculus GN=Gtf2b PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 40/94 (42.55%), Postives = 54/94 (57.45%), Query Frame = -3
Query:  362 IHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDI--RRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPN 637
            I  GDFM RFCSNL +             K+ E D+   RSPIS+AAA IY+ +Q S +K+  K+I    GVA+ TIR SY+ +YP    + P+
Sbjct:  209 ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPS 302          
The following BLAST results are available for this feature:
BLAST of CN181589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
TF2B_SOYBN1.319e-5386.89Transcription initiation factor IIB OS=Glycine max... [more]
TF2B2_ARATH1.234e-5185.25Transcription initiation factor IIB-2 OS=Arabidops... [more]
TF2B1_ARATH2.846e-4880.33Transcription initiation factor IIB-1 OS=Arabidops... [more]
TF2B_ORYSJ3.717e-4877.87Transcription initiation factor IIB OS=Oryza sativ... [more]
TF2B_DROVI1.022e-1346.24Transcription initiation factor IIB OS=Drosophila ... [more]
TF2B_DROME1.022e-1346.24Transcription initiation factor IIB OS=Drosophila ... [more]
TF2B_XENLA8.648e-1344.09Transcription initiation factor IIB OS=Xenopus lae... [more]
TF2B_DICDI5.606e-1240.95Transcription initiation factor IIB OS=Dictyosteli... [more]
TF2B_RAT1.249e-1142.55Transcription initiation factor IIB OS=Rattus norv... [more]
TF2B_MOUSE1.249e-1142.55Transcription initiation factor IIB OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001C20_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001C20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181589 ID=CN181589; Name=CN181589; organism=Citrus sinensis; type=EST; length=687bp
ATTATTTTAAACTTTATTAGGTAAAACAATGTAAATAAATTAAGCATAAA
TTGAAAAATAAACTTGTATTAGCTCCTCTCTGTCTCTCTCCCCCTTCTCT
CTGTCTCTCTCTCTTCACTTTTTTTGACTTTTTGTCAATATTTGTAAATT
AAAGGTTGCAATGCAGTCAACTGCACAAAGACAAAACAGTCAAGAAAATA
AGTACGAAAATCCTCGTAAATAGGATGCTGACAGATTCTGAATACATCAA
CGTGAGGGCAGTTCAAACCACTCAAGATGCTTGTTTCACGGTGTTGTTAT
TCATGCGCTCTACATTTTACGGGCTGCAAAGGTTTTTAAGATCCTCTTCC
TTGGCATACCAGTTTGGTATTATCTTTGAGACATGAGGATAAAGATCCTT
GTACGAATTTCTGATTGTCCCCTCAGCAACTCCAGTAGCAACAGAAATAT
CTTTGAGCGGCTTCTTGTCATCTGAAAGCTGAGTTATAATATAAATAACT
GCAGCTGCAATTGATATTGGGCTCCTCCTTATATCAAACTCCTCGGACTT
CTGAACAGCTTCTTGGGCAGCTTTAACAGCTTGATTATTCATACCCAAAT
TGGAACAGAAGCGCCTCATAAAGTCCCCAGCATGTATAGTTCCCATCTCC
ACTGACTGACCAGTCTCCAAACCCAGCTGTTTCACAA
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