CN181589
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN181589 vs. ExPASy Swiss-Prot
Match: TF2B_SOYBN (Transcription initiation factor IIB OS=Glycine max GN=TFIIB1 PE=2 SV=1) HSP 1 Score: 209.534 bits (532), Expect = 1.319e-53 Identity = 106/122 (86.89%), Postives = 108/122 (88.52%), Query Frame = -3 Query: 320 VKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 685 VKQLGLE G +VEMGTIHAGDFMRRFCSNL MNN KSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDIS+ATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP Sbjct: 192 VKQLGLENGNAVEMGTIHAGDFMRRFCSNLCMNNQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISLATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 313
BLAST of CN181589 vs. ExPASy Swiss-Prot
Match: TF2B2_ARATH (Transcription initiation factor IIB-2 OS=Arabidopsis thaliana GN=TFIIB2 PE=2 SV=1) HSP 1 Score: 202.986 bits (515), Expect = 1.234e-51 Identity = 104/122 (85.25%), Postives = 107/122 (87.70%), Query Frame = -3 Query: 320 VKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 685 VKQLGLETGQ VEMGTIHAGDFMRRFCSNLGM N KSEEFDIRRSPISIAAAVIYIITQLSD+KKPL+DISVATGVAEGTIRNSYKDLYPH+SKIIP WYAKEEDLKNL SP Sbjct: 191 VKQLGLETGQLVEMGTIHAGDFMRRFCSNLGMTNQTVKAAQESVQKSEEFDIRRSPISIAAAVIYIITQLSDEKKPLRDISVATGVAEGTIRNSYKDLYPHLSKIIPAWYAKEEDLKNLQSP 312
BLAST of CN181589 vs. ExPASy Swiss-Prot
Match: TF2B1_ARATH (Transcription initiation factor IIB-1 OS=Arabidopsis thaliana GN=TFIIB1 PE=1 SV=1) HSP 1 Score: 191.815 bits (486), Expect = 2.846e-48 Identity = 98/122 (80.33%), Postives = 103/122 (84.43%), Query Frame = -3 Query: 320 VKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 685 VK LGLE GQSV++GTIHAGDFMRRFCSNL M+N KSEEFDIRRSPISIAA VIYIITQLSDDKK LKDIS ATGVAEGTIRNSYKDLYPH+SKI P+WYAKEEDLKNL SP Sbjct: 191 VKTLGLEPGQSVDLGTIHAGDFMRRFCSNLAMSNHAVKAAQEAVQKSEEFDIRRSPISIAAVVIYIITQLSDDKKTLKDISHATGVAEGTIRNSYKDLYPHLSKIAPSWYAKEEDLKNLSSP 312
BLAST of CN181589 vs. ExPASy Swiss-Prot
Match: TF2B_ORYSJ (Transcription initiation factor IIB OS=Oryza sativa subsp. japonica GN=TFIIB PE=1 SV=1) HSP 1 Score: 191.43 bits (485), Expect = 3.717e-48 Identity = 95/122 (77.87%), Postives = 105/122 (86.07%), Query Frame = -3 Query: 320 VKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 685 VKQL +E GQS+EMGTIHAGDF+RRFCS LGMNN +SEE DIRRSPISIAAAVIY+ITQLSDDKKPLKDIS+ATGVAEGTIRNSYKDLYP+ S++IPN YAKEEDLKNLC+P Sbjct: 191 VKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMNNQAVKAAQEAVQRSEELDIRRSPISIAAAVIYMITQLSDDKKPLKDISLATGVAEGTIRNSYKDLYPYASRLIPNTYAKEEDLKNLCTP 312
BLAST of CN181589 vs. ExPASy Swiss-Prot
Match: TF2B_DROVI (Transcription initiation factor IIB OS=Drosophila virilis GN=TfIIB PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.022e-13 Identity = 43/93 (46.24%), Postives = 56/93 (60.22%), Query Frame = -3 Query: 365 IHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDI--RRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIP 637 I DFM RFC+NL + N K+ E DI RSPIS+AAA IY+ +Q S+ K+ K+I GVA+ TIR SYK +YPH +K+ P Sbjct: 186 ITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDIVPGRSPISVAAAAIYMASQASEHKRSQKEIGDIAGVADVTIRQSYKLMYPHAAKLFP 278
BLAST of CN181589 vs. ExPASy Swiss-Prot
Match: TF2B_DROME (Transcription initiation factor IIB OS=Drosophila melanogaster GN=TfIIB PE=1 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.022e-13 Identity = 43/93 (46.24%), Postives = 56/93 (60.22%), Query Frame = -3 Query: 365 IHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDI--RRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIP 637 I DFM RFC+NL + N K+ E DI RSPIS+AAA IY+ +Q S+ K+ K+I GVA+ TIR SYK +YPH +K+ P Sbjct: 208 ITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDIVPGRSPISVAAAAIYMASQASEHKRSQKEIGDIAGVADVTIRQSYKLMYPHAAKLFP 300
BLAST of CN181589 vs. ExPASy Swiss-Prot
Match: TF2B_XENLA (Transcription initiation factor IIB OS=Xenopus laevis GN=gtf2b PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 8.648e-13 Identity = 41/93 (44.09%), Postives = 54/93 (58.06%), Query Frame = -3 Query: 365 IHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDI--RRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIP 637 I GDFM RFCSNLG+ K+ E D+ RSPIS+AAA IY+ +Q S +K+ K+I GVA+ TIR SY+ +YP + P Sbjct: 209 ITTGDFMSRFCSNLGLTKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFP 301
BLAST of CN181589 vs. ExPASy Swiss-Prot
Match: TF2B_DICDI (Transcription initiation factor IIB OS=Dictyostelium discoideum GN=gtf2b PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.606e-12 Identity = 43/105 (40.95%), Postives = 62/105 (59.05%), Query Frame = -3 Query: 362 ETGQSV-EMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDI--RRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPN 667 ET SV + TI + DF RFCS L + N + + I +SPIS+ AA IY+++QLS +K+ K I+ +GV+E TIRN+YKDLY ++IP+ Sbjct: 207 ETFASVLNLQTISSEDFTSRFCSTLKLPNDVKKGAEHVSKMAMDMGIVAGKSPISVTAASIYMVSQLSPEKRTQKQIADVSGVSEVTIRNAYKDLYAKRDQLIPS 311
BLAST of CN181589 vs. ExPASy Swiss-Prot
Match: TF2B_RAT (Transcription initiation factor IIB OS=Rattus norvegicus GN=Gtf2b PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11 Identity = 40/94 (42.55%), Postives = 54/94 (57.45%), Query Frame = -3 Query: 362 IHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDI--RRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPN 637 I GDFM RFCSNL + K+ E D+ RSPIS+AAA IY+ +Q S +K+ K+I GVA+ TIR SY+ +YP + P+ Sbjct: 209 ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPS 302
BLAST of CN181589 vs. ExPASy Swiss-Prot
Match: TF2B_MOUSE (Transcription initiation factor IIB OS=Mus musculus GN=Gtf2b PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11 Identity = 40/94 (42.55%), Postives = 54/94 (57.45%), Query Frame = -3 Query: 362 IHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDI--RRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPN 637 I GDFM RFCSNL + K+ E D+ RSPIS+AAA IY+ +Q S +K+ K+I GVA+ TIR SY+ +YP + P+ Sbjct: 209 ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPS 302 The following BLAST results are available for this feature:
BLAST of CN181589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >CN181589 ID=CN181589; Name=CN181589; organism=Citrus sinensis; type=EST; length=687bpback to top |