CN181570

Overview
NameCN181570
Unique NameCN181570
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181570 vs. ExPASy Swiss-Prot
Match: RFA1_YEAST (Replication factor A protein 1 OS=Saccharomyces cerevisiae GN=RFA1 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.662e-18
Identity = 49/159 (30.82%), Postives = 88/159 (55.35%), Query Frame = -1
Query:  153 EKPVFFSIKTYISLIKPDQAMWYRAC--KTCNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKFLLEEISK 623
            EK  FFS+K  IS +K D    Y AC  + CNKKV +     + CE C  N+   + RYI+   + D + + W+++F+++A++++G  A+ L  LK +  D N +    + +    +  R+   +  YN++ R R TV  +  +++ AE+ +L +E+SK
Sbjct:  462 EKGDFFSVKAAISFLKVDNFA-YPACSNENCNKKVLEQPDGTWRCEKCDTNNARPNWRYILTISIIDETNQLWLTLFDDQAKQLLGVDANTLMSLKEE--DPNEFTKITQSIQMNEYDFRIRAREDTYNDQSRIRYTVANLHSLNYRAEADYLADELSK 617          
BLAST of CN181570 vs. ExPASy Swiss-Prot
Match: RFA1_SCHPO (Replication factor A protein 1 OS=Schizosaccharomyces pombe GN=ssb1 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.314e-17
Identity = 54/157 (34.39%), Postives = 86/157 (54.78%), Query Frame = -1
Query:  159 EKPVFFSIKTYISLIKPDQAMWYRACKT--CNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKFLLEEI 623
            E P +FS+K  I  I+      Y AC    CNKKV D  GS + CE C K  +    RYI+   V D +G+ W+++F++  + I+  +ADELN+L  Q  D+N++   + E  ++P++ +    Q  +  E R R TV ++  +D+  ESK L+  I
Sbjct:  453 ETPDYFSLKGTIVYIRKKNVS-YPACPAADCNKKVFDQGGS-WRCEKCNKEYDAPQYRYIITIAVGDHTGQLWLNVFDDVGKLIMHKTADELNDL--QENDENAFMNCMAEACYMPYIFQCRAKQDNFKGEMRVRYTVMSINQMDWKEESKRLINFI 605          
BLAST of CN181570 vs. ExPASy Swiss-Prot
Match: RFA1_PONAB (Replication protein A 70 kDa DNA-binding subunit OS=Pongo abelii GN=RPA1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.166e-15
Identity = 52/165 (31.52%), Postives = 79/165 (47.88%), Query Frame = -1
Query:  153 NPSLGDEKPVFFSIKTYISLIKPDQAMWYRACKT--CNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKFLLEEISK 641
            N   GD+   F S+ T + L K +    Y+AC T  CNKKV D     Y CE C         R I+   + D     W++ F E AE I+G +A  L ELK +  ++ +++   +   +   + RV V  + YN+E R + TV  V PVD+    + L+  I +
Sbjct:  452 NLGQGDKPDYFSSVATVVYLRKEN--CMYQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKDK--NEQAFEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYREYGRRLVMSIRR 612          
BLAST of CN181570 vs. ExPASy Swiss-Prot
Match: RFA1_HUMAN (Replication protein A 70 kDa DNA-binding subunit OS=Homo sapiens GN=RPA1 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.166e-15
Identity = 52/165 (31.52%), Postives = 79/165 (47.88%), Query Frame = -1
Query:  153 NPSLGDEKPVFFSIKTYISLIKPDQAMWYRACKT--CNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKFLLEEISK 641
            N   GD+   F S+ T + L K +    Y+AC T  CNKKV D     Y CE C         R I+   + D     W++ F E AE I+G +A  L ELK +  ++ +++   +   +   + RV V  + YN+E R + TV  V PVD+    + L+  I +
Sbjct:  452 NLGQGDKPDYFSSVATVVYLRKEN--CMYQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKDK--NEQAFEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYREYGRRLVMSIRR 612          
BLAST of CN181570 vs. ExPASy Swiss-Prot
Match: RFA1_XENTR (Replication protein A 70 kDa DNA-binding subunit OS=Xenopus tropicalis GN=rpa1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.828e-15
Identity = 52/161 (32.30%), Postives = 78/161 (48.45%), Query Frame = -1
Query:  153 GDEKPVFFSIKTYISLIKPDQAMWYRACKT--CNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKFLLEEISK 629
            G++   F S+ T + L K +    Y+AC +  CNKKV D     + CE C K       R I+ A + D     WI+ F E AE I+G +A  L ELK +  ++ +Y    +   +  +  R+ V  + YN+E R + T   V PVD    S+ L+  I K
Sbjct:  447 GEKADYFTSVATIVYLRKEN--CLYQACPSQDCNKKVIDQQNGLFRCEKCDKEFPNYKYRLILSANIADFGENQWITCFQESAESILGQNATYLGELKEK--NEQAYDEVFQNANFRSYTFRIRVKLETYNDESRIKATAMDVKPVDHKEYSRRLIMNIRK 603          
BLAST of CN181570 vs. ExPASy Swiss-Prot
Match: RFA1_MOUSE (Replication protein A 70 kDa DNA-binding subunit OS=Mus musculus GN=Rpa1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.828e-15
Identity = 49/161 (30.43%), Postives = 78/161 (48.45%), Query Frame = -1
Query:  147 EKPVFFSIKTYISLIKPDQAMWYRACKT--CNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKFLLEEISKKV 623
            +K  +FS    +  ++ +  M Y+AC T  CNKKV D     Y CE C +       R I+ A + D     W++ F E AE I+G +   L ELK +  ++ +++   +   +     R+ V  + YN+E R + TV  V PVDF    + L+  I K +
Sbjct:  466 DKADYFSTVAAVVFLRKENCM-YQACPTQDCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSANIADFQENQWVTCFQESAEAILGQNTMYLGELKEK--NEQAFEEVFQNANFRSFTFRIRVKLETYNDESRIKATVMDVKPVDFRDYGRRLIANIRKNM 623          
BLAST of CN181570 vs. ExPASy Swiss-Prot
Match: RFA1_XENLA (Replication protein A 70 kDa DNA-binding subunit OS=Xenopus laevis GN=rpa1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.075e-14
Identity = 52/161 (32.30%), Postives = 77/161 (47.83%), Query Frame = -1
Query:  153 GDEKPVFFSIKTYISLIKPDQAMWYRACKT--CNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKFLLEEISK 629
            G++   F S+ T + L K +    Y+AC +  CNKKV D     + CE C K       R I+ A + D     WI+ F E AE I+G +A  L ELK +  ++ +Y    +   +  +  R  V  + YN+E R + T   V PVD    S+ L+  I K
Sbjct:  447 GEKADYFTSVATIVYLRKEN--CLYQACPSQDCNKKVIDQQNGLFRCEKCNKEFPNFKYRLILSANIADFGENQWITCFQESAESILGQNATYLGELKEK--NEQAYDEVFQNANFRSYTFRARVKLETYNDESRIKATAVDVKPVDHKEYSRRLIMNIRK 603          
BLAST of CN181570 vs. ExPASy Swiss-Prot
Match: RFA1_DROME (Replication protein A 70 kDa DNA-binding subunit OS=Drosophila melanogaster GN=RpA-70 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.404e-14
Identity = 43/159 (27.04%), Postives = 80/159 (50.31%), Query Frame = -1
Query:  153 EKPVFFSIKTYISLIKPDQAMWYRAC--KTCNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKFLLEEISK 623
            +KP +F  K  + ++K + A +YRAC    CNKKV D     + CE C         R ++   + D +   W+S FNE  E+++G ++ E+ E      D    +     + +  H+ ++    + Y +  R ++TV++VAP++    +K LL+E+ +
Sbjct:  440 DKPDYFQCKAVVHIVKQENA-FYRACPQSDCNKKVVDEGNDQFRCEKCNALFPNFKYRLLINMSIGDWTSNRWVSSFNEVGEQLLGHTSQEVGEALE--NDPAKAEQIFSALNFTSHIFKLRCKNEVYGDMTRNKLTVQSVAPINHKEYNKHLLKELQE 595          
BLAST of CN181570 vs. ExPASy Swiss-Prot
Match: RFA1_CAEBR (Probable replication factor A 73 kDa subunit OS=Caenorhabditis briggsae GN=rpa-1 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.833e-14
Identity = 47/160 (29.38%), Postives = 89/160 (55.62%), Query Frame = -1
Query:  159 EKPVFFSIKTYISLIKPDQAMWYRACKT--CNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVD---FAAESKFLLEEI 623
            +K  + S+K  I+ I P+ A+ Y+ C +  C KKV ++ G  Y CE C K+  +    Y+M   + D +G+ +++ F + A +++G +A E+ +LK +  + N Y    + + +VP + R+    + YN E RQ++TV +V  V+   +    K L+E++
Sbjct:  494 DKGDYASVKAMITRINPNSAL-YKGCASEGCQKKVIESDGE-YRCEKCNKSMNKFKWLYMMQFELSDETGQVYVTAFGDSAAKVVGKTAQEVGDLKDE--NLNEYNATFERLQFVPKMWRLRCKMETYNEEVRQKMTVFSVEEVNQDKYIENLKELIEQM 649          
BLAST of CN181570 vs. ExPASy Swiss-Prot
Match: RFA1_CHICK (Replication protein A 70 kDa DNA-binding subunit OS=Gallus gallus GN=RPA1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.099e-14
Identity = 47/161 (29.19%), Postives = 79/161 (49.07%), Query Frame = -1
Query:  153 GDEKPVFFSIKTYISLIKPDQAMWYRACKT--CNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKFLLEEISK 629
            GD+   F  + T + L K +    Y+AC +  CNKKV D     Y CE C +       R +++  + D     W++ F E AE I+G SA  L ELK +  ++ +++   +   +  +  ++ V  + YN+E R + T   V PV++   SK L+  I +
Sbjct:  453 GDKADYFSCVGTIVHLRKEN--CMYQACPSQDCNKKVIDQQNGLYRCEKCDREFPNFKYRMMLLVTIADSLDYQWVTCFQESAEFILGQSATFLGELKDK--NEQAFEEVFQNANFNTYEFKIRVKLETYNDESRIKATALDVKPVNYREYSKRLIASIRR 609          
The following BLAST results are available for this feature:
BLAST of CN181570 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RFA1_YEAST4.662e-1830.82Replication factor A protein 1 OS=Saccharomyces ce... [more]
RFA1_SCHPO2.314e-1734.39Replication factor A protein 1 OS=Schizosaccharomy... [more]
RFA1_PONAB2.166e-1531.52Replication protein A 70 kDa DNA-binding subunit O... [more]
RFA1_HUMAN2.166e-1531.52Replication protein A 70 kDa DNA-binding subunit O... [more]
RFA1_XENTR2.828e-1532.30Replication protein A 70 kDa DNA-binding subunit O... [more]
RFA1_MOUSE2.828e-1530.43Replication protein A 70 kDa DNA-binding subunit O... [more]
RFA1_XENLA1.075e-1432.30Replication protein A 70 kDa DNA-binding subunit O... [more]
RFA1_DROME1.404e-1427.04Replication protein A 70 kDa DNA-binding subunit O... [more]
RFA1_CAEBR1.833e-1429.38Probable replication factor A 73 kDa subunit OS=Ca... [more]
RFA1_CHICK9.099e-1429.19Replication protein A 70 kDa DNA-binding subunit O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001C09_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181570 ID=CN181570; Name=CN181570; organism=Citrus sinensis; type=EST; length=644bp
AACACATTCTTGATTGCCTGAAGATAAATACAAGCAATATTGTGACTAAC
AGTCATTACCCAACTAGATTTCAATCCATAATATAAACAAAATGTCAACC
CAGCATCTTTTATAGAAAAAAGATAGCTTTAGGCATTCTGATGAGAAACT
TTCTTCGATATCTCTTCCAGCAAAAACTTGGATTCAGCAGCAAAGTCAAC
TGGAGCAACAGCCCTGACGGTTACCCTTTGTCTCTTCTCATTGTTGTACT
CTTGTTGAGCAACACTAACTCGGAGGAGATGAGGAACCCAAGTAACTTCT
TTCAATTTCATTTGATATGAATTATCATCTCCCAACTGTGACTTCAATTC
ATTAAGCTCATCAGCAGAGCATCCAATGATCCTTTCTGCTTCCTCATTGA
ATATAGAAATCCAAGCTTCGCCACTTCCATCACAGACCCTTGCAACCATT
ATGTATCTTAAACTACATTCTTCATCATTTTTTTGGCACCCTTCACACCA
ATACCCAGATCCCAGGGCATCTGTCACTTTCTTGTTGCAAGTTTTGCAAG
CACGGTACCACATTGCTTGATCAGGCTTGATTAAGCTTATGTATGTTTTG
ATGCTAAAAAACACTGGCTTTTCATCACCCAAGGATGGGTTACT
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