CN181558

Overview
NameCN181558
Unique NameCN181558
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6052 contig Csv1_Contig6052:351..969. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181558 vs. ExPASy Swiss-Prot
Match: FBRL2_ARATH (rRNA 2'-O-methyltransferase fibrillarin 2 OS=Arabidopsis thaliana GN=FIB2 PE=1 SV=2)

HSP 1 Score: 382.489 bits (981), Expect = 9.231e-106
Identity = 189/202 (93.56%), Postives = 196/202 (97.03%), Query Frame = -3
Query:    9 HEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKP 614
            H GVFIAKGKEDALVTKNLV GEAVYNEKRISVQNEDGTK EYR+WNPFRSKLAAA+LGGVDNIWIKPG +VLYLGAASGTTVSHVSD+VGP G VYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLK+GGHFVISIKANCIDSTVPAEAVFQ+EVKKLQQ+QFKP
Sbjct:   87 HAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKTEYRVWNPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKSGGHFVISIKANCIDSTVPAEAVFQTEVKKLQQEQFKP 288          
BLAST of CN181558 vs. ExPASy Swiss-Prot
Match: FBRL1_ARATH (rRNA 2'-O-methyltransferase fibrillarin 1 OS=Arabidopsis thaliana GN=FIB1 PE=1 SV=1)

HSP 1 Score: 380.178 bits (975), Expect = 4.581e-105
Identity = 189/202 (93.56%), Postives = 195/202 (96.53%), Query Frame = -3
Query:    9 HEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKP 614
            H GVFIAKGKEDALVTKNLV GEAVYNEKRISVQNEDGTKVEYR+WNPFRSKLAAA+LGGVDNIWIKPG +VLYLGAASGTTVSHVSD+VGP G VYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNAS+FLK GGHFVISIKANCIDSTV AEAVFQSEVKKLQQ+QFKP
Sbjct:   76 HAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKVEYRVWNPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASFFLKTGGHFVISIKANCIDSTVAAEAVFQSEVKKLQQEQFKP 277          
BLAST of CN181558 vs. ExPASy Swiss-Prot
Match: FBRL_RAT (rRNA 2'-O-methyltransferase fibrillarin OS=Rattus norvegicus GN=Fbl PE=1 SV=2)

HSP 1 Score: 326.25 bits (835), Expect = 7.851e-89
Identity = 160/202 (79.21%), Postives = 179/202 (88.61%), Query Frame = -3
Query:    9 HEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKP 614
            HEGVFI +GKEDALVTKNLV GE+VY EKR+S+   D  K+EYR WNPFRSKLAAA+LGGVD I IKPG +VLYLGAASGTTVSHVSDIVGP+G+VYAVEFSHRSGRDL+N+AKKRTN+IP+IEDARHP KYRML+ MVDVIF+DVAQPDQ RI+ALNA  FL+ GGHFVISIKANCIDST  AEAVF SEVKK+QQ+  KP
Sbjct:   99 HEGVFICRGKEDALVTKNLVPGESVYGEKRVSISEGDD-KIEYRAWNPFRSKLAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKP 299          
BLAST of CN181558 vs. ExPASy Swiss-Prot
Match: FBRL_MOUSE (rRNA 2'-O-methyltransferase fibrillarin OS=Mus musculus GN=Fbl PE=1 SV=2)

HSP 1 Score: 326.25 bits (835), Expect = 7.851e-89
Identity = 160/202 (79.21%), Postives = 179/202 (88.61%), Query Frame = -3
Query:    9 HEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKP 614
            HEGVFI +GKEDALVTKNLV GE+VY EKR+S+   D  K+EYR WNPFRSKLAAA+LGGVD I IKPG +VLYLGAASGTTVSHVSDIVGP+G+VYAVEFSHRSGRDL+N+AKKRTN+IP+IEDARHP KYRML+ MVDVIF+DVAQPDQ RI+ALNA  FL+ GGHFVISIKANCIDST  AEAVF SEVKK+QQ+  KP
Sbjct:   99 HEGVFICRGKEDALVTKNLVPGESVYGEKRVSISEGDD-KIEYRAWNPFRSKLAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKP 299          
BLAST of CN181558 vs. ExPASy Swiss-Prot
Match: FBRL_HUMAN (rRNA 2'-O-methyltransferase fibrillarin OS=Homo sapiens GN=FBL PE=1 SV=2)

HSP 1 Score: 326.25 bits (835), Expect = 7.851e-89
Identity = 160/202 (79.21%), Postives = 179/202 (88.61%), Query Frame = -3
Query:    9 HEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKP 614
            HEGVFI +GKEDALVTKNLV GE+VY EKR+S+   D  K+EYR WNPFRSKLAAA+LGGVD I IKPG +VLYLGAASGTTVSHVSDIVGP+G+VYAVEFSHRSGRDL+N+AKKRTN+IP+IEDARHP KYRML+ MVDVIF+DVAQPDQ RI+ALNA  FL+ GGHFVISIKANCIDST  AEAVF SEVKK+QQ+  KP
Sbjct:   93 HEGVFICRGKEDALVTKNLVPGESVYGEKRVSISEGDD-KIEYRAWNPFRSKLAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKP 293          
BLAST of CN181558 vs. ExPASy Swiss-Prot
Match: FBRL_XENLA (rRNA 2'-O-methyltransferase fibrillarin OS=Xenopus laevis GN=fbl PE=2 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 2.983e-88
Identity = 161/203 (79.31%), Postives = 180/203 (88.67%), Query Frame = -3
Query:    9 HEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDG-TKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKP 614
            HEG+FI +GKEDALVTKNLV GE+VY EKRISV  EDG  K EYR WNPFRSK+AAA+LGGVD I IKPGV+VLYLGAASGTTVSHVSD+VGP G+VYAVEFSHRSGRDL+N+AKKRTN+IP+IEDARHP KYR+LVGMVDV+F+DVAQPDQ RI+ALNA  FLK GGHFVISIKANCIDST   EAVF +EVKK+QQ+  KP
Sbjct:   95 HEGIFICRGKEDALVTKNLVPGESVYGEKRISV--EDGEVKTEYRAWNPFRSKIAAAILGGVDQIHIKPGVKVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLINVAKKRTNIIPVIEDARHPHKYRILVGMVDVVFADVAQPDQTRIVALNAHNFLKNGGHFVISIKANCIDSTAAPEAVFAAEVKKMQQENMKP 295          
BLAST of CN181558 vs. ExPASy Swiss-Prot
Match: FBRL_DROER (rRNA 2'-O-methyltransferase fibrillarin OS=Drosophila erecta GN=Fib PE=3 SV=1)

HSP 1 Score: 322.783 bits (826), Expect = 8.680e-88
Identity = 159/202 (78.71%), Postives = 179/202 (88.61%), Query Frame = -3
Query:    9 HEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKP 614
            HEGVFIA+GKEDALVT+N V G  VY EKRISV+N +G K+EYR+WNPFRSKLAAAVLGGV+ I + PG +VLYLGAASGTTVSHVSD+VGP G+VYAVEFSHRSGRDL+N+AKKRTN+IPIIEDARHP KYRMLVGMVD IF+DVAQPDQ RI+ALNA +FLK GGHFVISIKA+CIDST   EAVF SEVKK+Q D+ KP
Sbjct:  119 HEGVFIARGKEDALVTRNFVPGSEVYGEKRISVEN-NGEKIEYRVWNPFRSKLAAAVLGGVEQIHMPPGSKVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLINVAKKRTNIIPIIEDARHPHKYRMLVGMVDTIFADVAQPDQGRIVALNAQHFLKNGGHFVISIKASCIDSTAQPEAVFASEVKKMQADKLKP 319          
BLAST of CN181558 vs. ExPASy Swiss-Prot
Match: FBRL_SCHPO (rRNA 2'-O-methyltransferase fibrillarin OS=Schizosaccharomyces pombe GN=fib1 PE=1 SV=1)

HSP 1 Score: 320.087 bits (819), Expect = 5.627e-87
Identity = 155/202 (76.73%), Postives = 180/202 (89.11%), Query Frame = -3
Query:    9 HEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKP 614
            H GVFIA+GKED LVT+NLV GE+VYNEKRISV + DGTKVEYR+WNPFRSKLAA +LGG+DNI+IKPG RVLYLGAA+GT+VSHV+D+VGP G+VYAVEFSHRSGRDL+NMAKKRTNVIPI+EDARH  KYRMLVGMVDV+F+DVAQPDQARI+ALNA+ FLK  G  VIS+KA+CIDST  A  VF  EVKK+Q+++ KP
Sbjct:   80 HAGVFIARGKEDLLVTRNLVPGESVYNEKRISVDSPDGTKVEYRVWNPFRSKLAAGILGGLDNIYIKPGARVLYLGAANGTSVSHVADVVGPEGLVYAVEFSHRSGRDLLNMAKKRTNVIPIVEDARHVQKYRMLVGMVDVVFADVAQPDQARIVALNAAAFLKNEGGVVISVKASCIDSTADAAVVFAREVKKMQEEKIKP 281          
BLAST of CN181558 vs. ExPASy Swiss-Prot
Match: FBRL_DROME (rRNA 2'-O-methyltransferase fibrillarin OS=Drosophila melanogaster GN=Fib PE=1 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 9.597e-87
Identity = 157/202 (77.72%), Postives = 178/202 (88.12%), Query Frame = -3
Query:    9 HEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKP 614
            HEGVFIA+GKEDALVT+N V G  VY EKRISV+  +G K+EYR+WNPFRSKLAAAVLGGV+ I + PG +VLYLGAASGTTVSHVSD+VGP G+VYAVEFSHRSGRDL+N+AKKRTN+IPIIEDARHP KYRMLVGMVD IF+DVAQPDQ RI+ALNA +FLK GGHFVISIKA+CIDST   EAVF +EVKK+Q D+ KP
Sbjct:  118 HEGVFIARGKEDALVTRNFVPGSEVYGEKRISVET-NGEKIEYRVWNPFRSKLAAAVLGGVEQIHMPPGSKVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLINVAKKRTNIIPIIEDARHPHKYRMLVGMVDTIFADVAQPDQGRIVALNAQHFLKNGGHFVISIKASCIDSTAQPEAVFAAEVKKMQADKLKP 318          
BLAST of CN181558 vs. ExPASy Swiss-Prot
Match: FBLL1_MOUSE (rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1 OS=Mus musculus GN=Fbll1 PE=2 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 8.983e-85
Identity = 154/202 (76.24%), Postives = 178/202 (88.12%), Query Frame = -3
Query:    9 HEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKP 614
            HEGVFI +G EDALVT N+V G +VY EKR++V  E+G K EYR WNPFRSKLAAA+LGGVD I IKP  +VLYLGAASGTTVSHVSDI+GP+G+VYAVEFSHR+GRDLVN+AKKRTN+IP++EDARHP KYRML+GMVDVIF+DVAQPDQ+RI+ALNA  FL+ GGHF+ISIKANCIDST  AEAVF SEV+KLQQ+  KP
Sbjct:   87 HEGVFIYRGAEDALVTLNMVPGVSVYGEKRVTVM-ENGEKQEYRTWNPFRSKLAAAILGGVDQIHIKPKSKVLYLGAASGTTVSHVSDIIGPDGLVYAVEFSHRAGRDLVNVAKKRTNIIPVLEDARHPLKYRMLIGMVDVIFADVAQPDQSRIVALNAHTFLRNGGHFLISIKANCIDSTASAEAVFASEVRKLQQENLKP 287          
The following BLAST results are available for this feature:
BLAST of CN181558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
FBRL2_ARATH9.231e-10693.56rRNA 2'-O-methyltransferase fibrillarin 2 OS=Arabi... [more]
FBRL1_ARATH4.581e-10593.56rRNA 2'-O-methyltransferase fibrillarin 1 OS=Arabi... [more]
FBRL_RAT7.851e-8979.21rRNA 2'-O-methyltransferase fibrillarin OS=Rattus ... [more]
FBRL_MOUSE7.851e-8979.21rRNA 2'-O-methyltransferase fibrillarin OS=Mus mus... [more]
FBRL_HUMAN7.851e-8979.21rRNA 2'-O-methyltransferase fibrillarin OS=Homo sa... [more]
FBRL_XENLA2.983e-8879.31rRNA 2'-O-methyltransferase fibrillarin OS=Xenopus... [more]
FBRL_DROER8.680e-8878.71rRNA 2'-O-methyltransferase fibrillarin OS=Drosoph... [more]
FBRL_SCHPO5.627e-8776.73rRNA 2'-O-methyltransferase fibrillarin OS=Schizos... [more]
FBRL_DROME9.597e-8777.72rRNA 2'-O-methyltransferase fibrillarin OS=Drosoph... [more]
FBLL1_MOUSE8.983e-8576.24rRNA/tRNA 2'-O-methyltransferase fibrillarin-like ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001B24_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001B24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181558 ID=CN181558; Name=CN181558; organism=Citrus sinensis; type=EST; length=619bp
TTGCTCAAGGGTTTGAACTGATCCTGTTGCAGCTTCTTAACCTCACTCTG
GAACACTGCCTCAGCAGGAACAGTGGAATCTATGCAGTTTGCCTTGATAG
AAATAACAAAATGACCTCCAGCTTTGAGAAAATATGATGCATTCAGGGCT
AAAATCCTCGCCTGATCCGGTTGGGCAACGTCAGAAAATATTACATCTAC
CATACCGACCAACATACGGTACTTGGCAGGATGTCTAGCATCTTCAATTA
TGGGTATAACATTGGTTCTCTTCTTTGCCATATTGACCAAGTCTCTACCA
CTTCTATGAGAAAATTCCACTGCATAAACTACTCCATTAGGGCCAACAAT
GTCCGAAACATGTGAGACAGTTGTGCCGGAAGCAGCACCAAGGTATAGAA
CCCTAACACCAGGTTTAATCCAAATATTATCAACACCACCAAGAACAGCT
GCAGCTAATTTGGAACGGAAGGGATTCCAAATTCTATACTCAACTTTGGT
TCCATCTTCATTCTGGACGGAGATCCTCTTCTCATTGTAGACAGCCTCAC
CGGCGACGAGATTCTTAGTGACAAGGGCGTCTTCTTTGCCCTTGGCAATG
AACACTCCTTCGTGTCCCT
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