CN188604

Overview
NameCN188604
Unique NameCN188604
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN188604 vs. ExPASy Swiss-Prot
Match: SRS1_ORYSJ (Salt stress root protein RS1 OS=Oryza sativa subsp. japonica GN=Os01g0233000 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.381e-16
Identity = 37/77 (48.05%), Postives = 52/77 (67.53%), Query Frame = 3 
Query:  369 VVEIYEASSAEIKTLVKDRKEDG-LKKHSTAVHKLLEDLVKIEFPGSKAVSEASSKFGAASVPGPVFFIFEKVSTFI 596
            VVE+ E+S  EIK L+KD+K    +KK+  AV K LE+L KI+FPG+K VS+A +K G   +   + FI EKV+ F+
Sbjct:   53 VVEVVESSPPEIKALLKDKKTASKIKKNGPAVTKFLEELAKIDFPGAKPVSDAVAKSGTTPLSPAIAFILEKVAPFV 129

HSP 2 Score: 35.8094 bits (81), Expect = 2.381e-16
Identity = 18/31 (58.06%), Postives = 24/31 (77.42%), Query Frame = 1 
Query:  217 WKSKVLPRIKKVFEKNGTKKAAAAEACKSFD 309
            WK+KVL  + K+F+K+G  KAAAAE  KSF+
Sbjct:    5 WKTKVLTGLNKLFDKDGK-KAAAAEFLKSFN 34
[Close]
BLAST of CN188604 vs. ExPASy Swiss-Prot
Match: SRS1_ORYSI (Salt stress root protein RS1 OS=Oryza sativa subsp. indica GN=OsI_001009 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.381e-16
Identity = 37/77 (48.05%), Postives = 52/77 (67.53%), Query Frame = 3 
Query:  369 VVEIYEASSAEIKTLVKDRKEDG-LKKHSTAVHKLLEDLVKIEFPGSKAVSEASSKFGAASVPGPVFFIFEKVSTFI 596
            VVE+ E+S  EIK L+KD+K    +KK+  AV K LE+L KI+FPG+K VS+A +K G   +   + FI EKV+ F+
Sbjct:   53 VVEVVESSPPEIKALLKDKKTASKIKKNGPAVTKFLEELAKIDFPGAKPVSDAVAKSGTTPLSPAIAFILEKVAPFV 129

HSP 2 Score: 35.8094 bits (81), Expect = 2.381e-16
Identity = 18/31 (58.06%), Postives = 24/31 (77.42%), Query Frame = 1 
Query:  217 WKSKVLPRIKKVFEKNGTKKAAAAEACKSFD 309
            WK+KVL  + K+F+K+G  KAAAAE  KSF+
Sbjct:    5 WKTKVLTGLNKLFDKDGK-KAAAAEFLKSFN 34
The following BLAST results are available for this feature:
BLAST of CN188604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SRS1_ORYSJ2.381e-1648.05Salt stress root protein RS1 OS=Oryza sativa subsp... [more]
SRS1_ORYSI2.381e-1648.05Salt stress root protein RS1 OS=Oryza sativa subsp... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0006G13_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006G13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188604 ID=CN188604; Name=CN188604; organism=Citrus sinensis; type=EST; length=707bp
AGTTAAGGGTGGCTCAAAACAGNTGCATTGAGGTAGACTCTTATTGAAGC
CTTGGGGAGACAGACAGCCAGAGGAAGGAGAGTTAAAAGAAGTGAGTGCA
TAGCTATTCAGATTCTTTTAGCAAACTTCTGCTTGCTGCACCAAGCCACC
AACTCAACTCAGATTTTTCTTTCAGAGGGACTCATTTGATTGGAAAAAAG
AAGAAAGATGGGGTACTGGAAATCCAAGGTCCTCCCAAGGATCAAGAAAG
TTTTCGAGAAAAACGGAACCAAGAAAGCTGCTGCTGCTGAGGCTTGCAAG
TCCTTTGATGATTCAAAGGAAGAAATCAATAAAGAGTTTGAAGAGAAGAA
GCCTGAGCTCCAACCTAAGTGGTCGAAATCTATGAAGCTTCTTCAGCTGA
AATCAAGACCCTGGTCAAGGATCGCAAGGAGGATGGACTTAAGAAGCACT
CCACTGCTGTGCACAAGTTACTTGAAGATCTCGTTAAAATCGAGTTTCCA
GGATCAAAAGCAGTAAGTGAAGCATCGTCAAAGTTTGGGGCAGCCTCTGT
TCCGGGGCCAGTTTTCTTCATATTTGAGAAGGTCTCAACGTTTATTGTTA
CTGAAGAAAAAGCAGCAGAGCCAGCAACCGCCGCAGCAGGAGAAGAAACA
AAACCGGAACAAGAGACAACAAGTAGTAGTACCGCCGCAGTCACAGAGAA
GGACGAC
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