CN188600
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188600 vs. ExPASy Swiss-Prot
Match: IPO7_DICDI (Probable importin-7 homolog OS=Dictyostelium discoideum GN=DDB_G0269860 PE=3 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 8.801e-35 Identity = 77/206 (37.38%), Postives = 126/206 (61.17%), Query Frame = 2 Query: 11 EIXFPLMCFP*KDQKLWDEDPHEYVRKGYDIIEPLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDE-TPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMN 625 ++ FP++CF +D +LW+ DP+E++R ++ + R ++F+ ++V KRG+ NL + F + +Y+ T K R+KDG L+ I L LK YKS LE+ML+ HVFPE SSP G L+A+A + ++ +I F+D F AL ++ + D +LPVRV + ++ + V A + ++E+RPILPQLLD+ F L++ Sbjct: 355 QVLFPIICFNDRDAELWECDPNEFLRSQFESSMTFATARIEVLNFIIDVVGKRGRANLDMIMGFCIQSLNKYNAATNASEKNPREKDGVLVIISVLSAYLKNISFYKSNLEQMLLLHVFPELSSPHGFLKARACSLFSEFYNIEFTDPVYFSNALKLILGLMSDNDLPVRVKAGTSICNLVRANQGVDELRPILPQLLDKIFSLLS 560
BLAST of CN188600 vs. ExPASy Swiss-Prot
Match: IPO7_MOUSE (Importin-7 OS=Mus musculus GN=Ipo7 PE=1 SV=2) HSP 1 Score: 129.798 bits (325), Expect = 1.113e-29 Identity = 76/203 (37.44%), Postives = 111/203 (54.68%), Query Frame = 2 Query: 11 EIXFPLMCFP*KDQKLWDEDPHEYVRKGYDIIEPLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGL-RDPELPVRVDSVFALRSFVEACRDLNE-----IRPILPQLL 601 ++ FPLMC+ D++LW EDP+EY+R +D+ E SP TA+ + KR KE LQK + F I + P R+KDGAL IG+L + L + + YK ++E ML HVFP FSS +G++RA+A WV + + F N + AL L D E+PV+V++ AL+ + E IRP++ LL Sbjct: 352 DVIFPLMCYTDADEELWQEDPYEYIRMKFDVFEDFISPTTAAQTLLFTACSKR-KEVLQKTMGFCYQILTEPNADP------RKKDGALHMIGSLAEILLKKKIYKDQMEYMLQNHVFPLFSSELGYMRARACWVLHYFCEVKFKSDQNLQTALELTRRCLIDDREMPVKVEAAIALQVLISNQEKAKEYITPFIRPVMQALL 547
BLAST of CN188600 vs. ExPASy Swiss-Prot
Match: IPO7_HUMAN (Importin-7 OS=Homo sapiens GN=IPO7 PE=1 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.113e-29 Identity = 76/203 (37.44%), Postives = 111/203 (54.68%), Query Frame = 2 Query: 11 EIXFPLMCFP*KDQKLWDEDPHEYVRKGYDIIEPLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGL-RDPELPVRVDSVFALRSFVEACRDLNE-----IRPILPQLL 601 ++ FPLMC+ D++LW EDP+EY+R +D+ E SP TA+ + KR KE LQK + F I + P R+KDGAL IG+L + L + + YK ++E ML HVFP FSS +G++RA+A WV + + F N + AL L D E+PV+V++ AL+ + E IRP++ LL Sbjct: 352 DVIFPLMCYTDADEELWQEDPYEYIRMKFDVFEDFISPTTAAQTLLFTACSKR-KEVLQKTMGFCYQILTEPNADP------RKKDGALHMIGSLAEILLKKKIYKDQMEYMLQNHVFPLFSSELGYMRARACWVLHYFCEVKFKSDQNLQTALELTRRCLIDDREMPVKVEAAIALQVLISNQEKAKEYITPFIRPVMQALL 547
BLAST of CN188600 vs. ExPASy Swiss-Prot
Match: IPO8_HUMAN (Importin-8 OS=Homo sapiens GN=IPO8 PE=1 SV=2) HSP 1 Score: 122.479 bits (306), Expect = 1.777e-27 Identity = 72/203 (35.47%), Postives = 113/203 (55.67%), Query Frame = 2 Query: 11 EIXFPLMCFP*KDQKLWDEDPHEYVRKGYDIIEPLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGL-RDPELPVRVDSVFALRSFVEACRDLNE-----IRPILPQLL 601 ++ F +MC+ +D++LW EDP+EY+R +DI E SP TA+ + +KR KE L K + F I T + P R+KDGAL IG+L + L + +K ++E L HVFP S +G+LRA++ WV ++ + F ++ N R A+ L D E+PV+V++ AL+S + E +RPI+ +LL Sbjct: 353 DVIFSVMCYKDEDEELWQEDPYEYIRMKFDIFEDYASPTTAAQTLLYTAAKKR-KEVLPKMMAFCYQIL-----TDPNFDP-RKKDGALHVIGSLAEILLKKSLFKDQMELFLQNHVFPLLLSNLGYLRARSCWVLHAFSSLKFHNELNLRNAVELAKKSLIEDKEMPVKVEAALALQSLISNQIQAKEYMKPHVRPIMQELL 548
BLAST of CN188600 vs. ExPASy Swiss-Prot
Match: IPO8_MOUSE (Importin-8 OS=Mus musculus GN=Ipo8 PE=2 SV=2) HSP 1 Score: 118.627 bits (296), Expect = 2.567e-26 Identity = 68/206 (33.01%), Postives = 114/206 (55.34%), Query Frame = 2 Query: 11 EIXFPLMCFP*KDQKLWDEDPHEYVRKGYDIIEPLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGL-RDPELPVRVDSVFALRSFVEACRDLNE-IRPILPQLLDEFFKLM 622 ++ F +MC+ +D++LW EDP+EY+R +DI E SP TA+ + +K+ KE L K + F I T + P R+KDGAL IG+L + L + +K ++E L HVFP S +G+LRA++ WV ++ + F ++ N R A+ L D E+PV+V++ AL+S + E ++P + ++ E ++ Sbjct: 353 DVIFSVMCYKDEDEELWQEDPYEYIRMKFDIFEDYASPTTAAQTLLYTAAKKK-KEVLPKMMAFCYQIL-----TDPNFDP-RKKDGALHVIGSLAEILLKKSLFKDQIELFLQNHVFPLLMSNLGYLRARSCWVLHAFSSLKFHNELNLRNAVELAKKSLIEDEEMPVKVEAALALQSLISNQAQAKEHMKPYVRFIMQELLHIV 551
BLAST of CN188600 vs. ExPASy Swiss-Prot
Match: IMA3_SCHPO (Probable importin c550.11 OS=Schizosaccharomyces pombe GN=SPCC550.11 PE=2 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.274e-25 Identity = 63/203 (31.03%), Postives = 110/203 (54.19%), Query Frame = 2 Query: 20 FPLMCFP*KDQKLWDEDPHEYVRKGYDIIEPLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDK-LKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMN 625 FP +C +D++LW+ DP E++ K DI + S A+ F+ +L KR K + F I +Y +P K RQK+GAL + A+ + L + P ++ LV HV PEF+SPVG+LR++A + +++ I++SD++ A +V++ L+D +LPVR+ + AL+ + + + +P ++ L N Sbjct: 356 FPQLCMSEEDEELWELDPVEFIHKYIDIYDDFNSADVAASRFLVKLASKRKKYTFMGILSFASDILNQYAASPPNEKNPRQKEGALRMVAAVSNSILSKNSPVAGMMQDFLVAHVMPEFTSPVGYLRSRACEMINRFSEIDWSDKSQLLNAYQAVLNCLQDNDLPVRIQAALALQPLMRHLEVHDVMTAHVPIIMQNLLFLAN 558
BLAST of CN188600 vs. ExPASy Swiss-Prot
Match: NMD5_YEAST (Nonsense-mediated mRNA decay protein 5 OS=Saccharomyces cerevisiae GN=NMD5 PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 9.468e-13 Identity = 47/184 (25.54%), Postives = 90/184 (48.91%), Query Frame = 2 Query: 14 IXFPLMCFP*KDQKLWDEDPHEYVRKGYDIIEPLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRY--DETPVEYKPYRQKDGALLAIGALCDKL-KQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDP--ELPVRVDSVFALRSFV 550 + FPL+ + + +D DP EY+ + D + YSP A++ ++ V KRGK LQ ++F+V + D + Q + L ++ D+L + P+ SE+E+ ++ +V P F S G L+++ + + ++F D V++ L + LPV + + AL++F+ Sbjct: 368 VIFPLLKPTAETLEAFDNDPQEYINRNMDFWDVGYSPDLAALALLTTCVTKRGKTTLQPTLEFMVSTLQSAVGDYNNIMLDNALQIESCLRIFSSIIDRLITKDSPFASEMEKFILTYVLPFFKSQYGFLQSRVCDICSKLGSMDFKDPVITSTIYEGVMNCLNNSSNSLPVELTAALALQTFI 551 The following BLAST results are available for this feature:
BLAST of CN188600 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CN188600 ID=CN188600; Name=CN188600; organism=Citrus sinensis; type=EST; length=626bpback to top |