CN188600

Overview
NameCN188600
Unique NameCN188600
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188600 vs. ExPASy Swiss-Prot
Match: IPO7_DICDI (Probable importin-7 homolog OS=Dictyostelium discoideum GN=DDB_G0269860 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.801e-35
Identity = 77/206 (37.38%), Postives = 126/206 (61.17%), Query Frame = 2
Query:   11 EIXFPLMCFP*KDQKLWDEDPHEYVRKGYDIIEPLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDE-TPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMN 625
            ++ FP++CF  +D +LW+ DP+E++R  ++      + R   ++F+ ++V KRG+ NL   + F +    +Y+  T    K  R+KDG L+ I  L   LK    YKS LE+ML+ HVFPE SSP G L+A+A  +  ++ +I F+D   F  AL  ++  + D +LPVRV +  ++ + V A + ++E+RPILPQLLD+ F L++
Sbjct:  355 QVLFPIICFNDRDAELWECDPNEFLRSQFESSMTFATARIEVLNFIIDVVGKRGRANLDMIMGFCIQSLNKYNAATNASEKNPREKDGVLVIISVLSAYLKNISFYKSNLEQMLLLHVFPELSSPHGFLKARACSLFSEFYNIEFTDPVYFSNALKLILGLMSDNDLPVRVKAGTSICNLVRANQGVDELRPILPQLLDKIFSLLS 560          
BLAST of CN188600 vs. ExPASy Swiss-Prot
Match: IPO7_MOUSE (Importin-7 OS=Mus musculus GN=Ipo7 PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.113e-29
Identity = 76/203 (37.44%), Postives = 111/203 (54.68%), Query Frame = 2
Query:   11 EIXFPLMCFP*KDQKLWDEDPHEYVRKGYDIIEPLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGL-RDPELPVRVDSVFALRSFVEACRDLNE-----IRPILPQLL 601
            ++ FPLMC+   D++LW EDP+EY+R  +D+ E   SP TA+   +     KR KE LQK + F   I    +  P      R+KDGAL  IG+L + L + + YK ++E ML  HVFP FSS +G++RA+A WV   +  + F    N + AL      L  D E+PV+V++  AL+  +       E     IRP++  LL
Sbjct:  352 DVIFPLMCYTDADEELWQEDPYEYIRMKFDVFEDFISPTTAAQTLLFTACSKR-KEVLQKTMGFCYQILTEPNADP------RKKDGALHMIGSLAEILLKKKIYKDQMEYMLQNHVFPLFSSELGYMRARACWVLHYFCEVKFKSDQNLQTALELTRRCLIDDREMPVKVEAAIALQVLISNQEKAKEYITPFIRPVMQALL 547          
BLAST of CN188600 vs. ExPASy Swiss-Prot
Match: IPO7_HUMAN (Importin-7 OS=Homo sapiens GN=IPO7 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.113e-29
Identity = 76/203 (37.44%), Postives = 111/203 (54.68%), Query Frame = 2
Query:   11 EIXFPLMCFP*KDQKLWDEDPHEYVRKGYDIIEPLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGL-RDPELPVRVDSVFALRSFVEACRDLNE-----IRPILPQLL 601
            ++ FPLMC+   D++LW EDP+EY+R  +D+ E   SP TA+   +     KR KE LQK + F   I    +  P      R+KDGAL  IG+L + L + + YK ++E ML  HVFP FSS +G++RA+A WV   +  + F    N + AL      L  D E+PV+V++  AL+  +       E     IRP++  LL
Sbjct:  352 DVIFPLMCYTDADEELWQEDPYEYIRMKFDVFEDFISPTTAAQTLLFTACSKR-KEVLQKTMGFCYQILTEPNADP------RKKDGALHMIGSLAEILLKKKIYKDQMEYMLQNHVFPLFSSELGYMRARACWVLHYFCEVKFKSDQNLQTALELTRRCLIDDREMPVKVEAAIALQVLISNQEKAKEYITPFIRPVMQALL 547          
BLAST of CN188600 vs. ExPASy Swiss-Prot
Match: IPO8_HUMAN (Importin-8 OS=Homo sapiens GN=IPO8 PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 1.777e-27
Identity = 72/203 (35.47%), Postives = 113/203 (55.67%), Query Frame = 2
Query:   11 EIXFPLMCFP*KDQKLWDEDPHEYVRKGYDIIEPLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGL-RDPELPVRVDSVFALRSFVEACRDLNE-----IRPILPQLL 601
            ++ F +MC+  +D++LW EDP+EY+R  +DI E   SP TA+   +    +KR KE L K + F   I      T   + P R+KDGAL  IG+L + L +   +K ++E  L  HVFP   S +G+LRA++ WV   ++ + F ++ N R A+      L  D E+PV+V++  AL+S +       E     +RPI+ +LL
Sbjct:  353 DVIFSVMCYKDEDEELWQEDPYEYIRMKFDIFEDYASPTTAAQTLLYTAAKKR-KEVLPKMMAFCYQIL-----TDPNFDP-RKKDGALHVIGSLAEILLKKSLFKDQMELFLQNHVFPLLLSNLGYLRARSCWVLHAFSSLKFHNELNLRNAVELAKKSLIEDKEMPVKVEAALALQSLISNQIQAKEYMKPHVRPIMQELL 548          
BLAST of CN188600 vs. ExPASy Swiss-Prot
Match: IPO8_MOUSE (Importin-8 OS=Mus musculus GN=Ipo8 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 2.567e-26
Identity = 68/206 (33.01%), Postives = 114/206 (55.34%), Query Frame = 2
Query:   11 EIXFPLMCFP*KDQKLWDEDPHEYVRKGYDIIEPLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGL-RDPELPVRVDSVFALRSFVEACRDLNE-IRPILPQLLDEFFKLM 622
            ++ F +MC+  +D++LW EDP+EY+R  +DI E   SP TA+   +    +K+ KE L K + F   I      T   + P R+KDGAL  IG+L + L +   +K ++E  L  HVFP   S +G+LRA++ WV   ++ + F ++ N R A+      L  D E+PV+V++  AL+S +       E ++P +  ++ E   ++
Sbjct:  353 DVIFSVMCYKDEDEELWQEDPYEYIRMKFDIFEDYASPTTAAQTLLYTAAKKK-KEVLPKMMAFCYQIL-----TDPNFDP-RKKDGALHVIGSLAEILLKKSLFKDQIELFLQNHVFPLLMSNLGYLRARSCWVLHAFSSLKFHNELNLRNAVELAKKSLIEDEEMPVKVEAALALQSLISNQAQAKEHMKPYVRFIMQELLHIV 551          
BLAST of CN188600 vs. ExPASy Swiss-Prot
Match: IMA3_SCHPO (Probable importin c550.11 OS=Schizosaccharomyces pombe GN=SPCC550.11 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.274e-25
Identity = 63/203 (31.03%), Postives = 110/203 (54.19%), Query Frame = 2
Query:   20 FPLMCFP*KDQKLWDEDPHEYVRKGYDIIEPLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDK-LKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMN 625
            FP +C   +D++LW+ DP E++ K  DI +   S   A+  F+ +L  KR K      + F   I  +Y  +P   K  RQK+GAL  + A+ +  L +  P    ++  LV HV PEF+SPVG+LR++A  +  +++ I++SD++    A  +V++ L+D +LPVR+ +  AL+  +      + +   +P ++     L N
Sbjct:  356 FPQLCMSEEDEELWELDPVEFIHKYIDIYDDFNSADVAASRFLVKLASKRKKYTFMGILSFASDILNQYAASPPNEKNPRQKEGALRMVAAVSNSILSKNSPVAGMMQDFLVAHVMPEFTSPVGYLRSRACEMINRFSEIDWSDKSQLLNAYQAVLNCLQDNDLPVRIQAALALQPLMRHLEVHDVMTAHVPIIMQNLLFLAN 558          
BLAST of CN188600 vs. ExPASy Swiss-Prot
Match: NMD5_YEAST (Nonsense-mediated mRNA decay protein 5 OS=Saccharomyces cerevisiae GN=NMD5 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.468e-13
Identity = 47/184 (25.54%), Postives = 90/184 (48.91%), Query Frame = 2
Query:   14 IXFPLMCFP*KDQKLWDEDPHEYVRKGYDIIEPLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRY--DETPVEYKPYRQKDGALLAIGALCDKL-KQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDP--ELPVRVDSVFALRSFV 550
            + FPL+    +  + +D DP EY+ +  D  +  YSP  A++  ++  V KRGK  LQ  ++F+V   +    D   +      Q +  L    ++ D+L  +  P+ SE+E+ ++ +V P F S  G L+++   +  +   ++F D          V++ L +    LPV + +  AL++F+
Sbjct:  368 VIFPLLKPTAETLEAFDNDPQEYINRNMDFWDVGYSPDLAALALLTTCVTKRGKTTLQPTLEFMVSTLQSAVGDYNNIMLDNALQIESCLRIFSSIIDRLITKDSPFASEMEKFILTYVLPFFKSQYGFLQSRVCDICSKLGSMDFKDPVITSTIYEGVMNCLNNSSNSLPVELTAALALQTFI 551          
The following BLAST results are available for this feature:
BLAST of CN188600 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
IPO7_DICDI8.801e-3537.38Probable importin-7 homolog OS=Dictyostelium disco... [more]
IPO7_MOUSE1.113e-2937.44Importin-7 OS=Mus musculus GN=Ipo7 PE=1 SV=2[more]
IPO7_HUMAN1.113e-2937.44Importin-7 OS=Homo sapiens GN=IPO7 PE=1 SV=1[more]
IPO8_HUMAN1.777e-2735.47Importin-8 OS=Homo sapiens GN=IPO8 PE=1 SV=2[more]
IPO8_MOUSE2.567e-2633.01Importin-8 OS=Mus musculus GN=Ipo8 PE=2 SV=2[more]
IMA3_SCHPO1.274e-2531.03Probable importin c550.11 OS=Schizosaccharomyces p... [more]
NMD5_YEAST9.468e-1325.54Nonsense-mediated mRNA decay protein 5 OS=Saccharo... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0006G10_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188600 ID=CN188600; Name=CN188600; organism=Citrus sinensis; type=EST; length=626bp
TAAAGGCTTTGAAATAGNTTTCCCTCTTATGTGCTTCCCTTAAAAGGACC
AAAAGCTTTGGGATGAAGACCCGCATGAGTACGTGAGAAAGGGCTATGAT
ATCATTGAACCTTTATATAGTCCCCGAACCGCTTCCATGGATTTTGTCAG
TGAGCTGGTCAGAAAACGTGGGAAAGAGAACCTTCAAAAGTTCATTCAAT
TCATTGTTGGAATTTTTAAGAGATATGATGAAACACCGGTGGAATATAAA
CCATACCGACAGAAAGATGGCGCATTGCTTGCTATTGGAGCTCTTTGTGA
TAAATTGAAACAAACTGAACCCTACAAATCTGAACTGGAGCGCATGTTAG
TGCAACATGTCTTCCCTGAGTTTAGCAGTCCTGTTGGTCATCTTAGAGCC
AAGGCGGCATGGGTTGCAGGACAGTATGCCCATATCAACTTCTCAGATCA
GAACAATTTTCGTAAAGCGCTGCACAGTGTGGTTTCTGGGTTGCGGGATC
CAGAACTTCCTGTTCGTGTTGATTCTGTGTTTGCATTACGATCATTTGTT
GAAGCTTGCAGAGATTTGAATGAAATTCGTCCAATCCTCCCTCAACTACT
TGATGAATTTTTCAAACTTATGAATG
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