CN181521

Overview
NameCN181521
Unique NameCN181521
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN181521_ssr406 microsatellite CN181521_ssr406:406..417. BLAST: Citrus ESTs to Prunus persica proteins V1
CN181521_ssr82 microsatellite CN181521_ssr82:82..93. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5488 contig Csv1_Contig5488:428..1133. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181521 vs. ExPASy Swiss-Prot
Match: EXP16_ARATH (Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.733e-23
Identity = 48/53 (90.57%), Postives = 51/53 (96.23%), Query Frame = -3
Query:  520 RNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGKNFRV 678
            RNWGQNWQSNAVLVGQSLSFRV +SDRR+STSWNI P+NWQFGQTFVGKNFRV
Sbjct:  208 RNWGQNWQSNAVLVGQSLSFRVTSSDRRTSTSWNIAPSNWQFGQTFVGKNFRV 260          
BLAST of CN181521 vs. ExPASy Swiss-Prot
Match: EXPA4_ARATH (Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.780e-23
Identity = 47/54 (87.04%), Postives = 52/54 (96.30%), Query Frame = -3
Query:  520 ARNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGKNFRV 681
            +RNWGQNWQSNAVLVGQ+LSFRV  SDRR+STSWN+VP+NWQFGQTFVGKNFRV
Sbjct:  204 SRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNMVPSNWQFGQTFVGKNFRV 257          
BLAST of CN181521 vs. ExPASy Swiss-Prot
Match: EXPA6_ARATH (Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.277e-22
Identity = 47/54 (87.04%), Postives = 52/54 (96.30%), Query Frame = -3
Query:  520 ARNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGKNFRV 681
            +RNWGQNWQSN+VLVGQSLSFRV +SDRRSSTSWNI PANW+FGQTF+GKNFRV
Sbjct:  204 SRNWGQNWQSNSVLVGQSLSFRVTSSDRRSSTSWNIAPANWKFGQTFMGKNFRV 257          
BLAST of CN181521 vs. ExPASy Swiss-Prot
Match: EXPA3_ARATH (Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.668e-22
Identity = 47/54 (87.04%), Postives = 50/54 (92.59%), Query Frame = -3
Query:  520 ARNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGKNFRV 681
            +RNWGQNWQSNAVL+GQSLSFRV ASDRRSSTSWN+ PA WQFGQTF GKNFRV
Sbjct:  209 SRNWGQNWQSNAVLIGQSLSFRVTASDRRSSTSWNVAPATWQFGQTFSGKNFRV 262          
BLAST of CN181521 vs. ExPASy Swiss-Prot
Match: EXPA9_ARATH (Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.543e-20
Identity = 45/54 (83.33%), Postives = 49/54 (90.74%), Query Frame = -3
Query:  520 ARNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGKNFRV 681
            +RNWGQNWQSNA+LVGQSLSFRVK SD RSSTS NI P+NWQFGQT+ GKNFRV
Sbjct:  205 SRNWGQNWQSNALLVGQSLSFRVKTSDGRSSTSNNIAPSNWQFGQTYSGKNFRV 258          
BLAST of CN181521 vs. ExPASy Swiss-Prot
Match: EXPA7_ORYSJ (Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.543e-20
Identity = 43/54 (79.63%), Postives = 47/54 (87.04%), Query Frame = -3
Query:  520 ARNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGKNFRV 681
            +RNWGQNWQSN+VLVGQ+LSFRV  SDRR+STSWN  PA W FGQTF GKNFRV
Sbjct:  211 SRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNAAPAGWHFGQTFEGKNFRV 264          
BLAST of CN181521 vs. ExPASy Swiss-Prot
Match: EXPA2_ORYSJ (Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.852e-14
Identity = 36/52 (69.23%), Postives = 41/52 (78.85%), Query Frame = -3
Query:  526 ARNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGKNF 681
            +RNWGQNWQSN+ L GQSLSF+V  SD R+ TS N+VPA WQFGQTF G  F
Sbjct:  200 SRNWGQNWQSNSYLDGQSLSFQVAVSDGRTVTSNNVVPAGWQFGQTFEGGQF 251          
BLAST of CN181521 vs. ExPASy Swiss-Prot
Match: EXP21_ORYSJ (Expansin-A21 OS=Oryza sativa subsp. japonica GN=EXPA21 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.852e-14
Identity = 34/52 (65.38%), Postives = 39/52 (75.00%), Query Frame = -3
Query:  526 ARNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGKNF 681
            ARNWGQNWQS A+L GQ+LSF V   DRRS  S+N+ PA W FGQTF G+ F
Sbjct:  212 ARNWGQNWQSGALLDGQALSFTVTTGDRRSVVSYNVAPAGWAFGQTFTGRQF 263          
BLAST of CN181521 vs. ExPASy Swiss-Prot
Match: EXP15_ARATH (Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.852e-14
Identity = 35/53 (66.04%), Postives = 42/53 (79.25%), Query Frame = -3
Query:  523 ARNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGKNFR 681
            +RNWGQNWQSN +L GQ+LSF+V ASD R+  S NI PA+W FGQTF G+ FR
Sbjct:  201 SRNWGQNWQSNNLLNGQALSFKVTASDGRTVVSNNIAPASWSFGQTFTGRQFR 253          
BLAST of CN181521 vs. ExPASy Swiss-Prot
Match: EXPA5_ARATH (Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.298e-14
Identity = 34/53 (64.15%), Postives = 39/53 (73.58%), Query Frame = -3
Query:  523 ARNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGKNFR 681
            +RNWGQNWQSN+ L GQSLSF V  SDRRS  S+N+ P  W FGQT+ G  FR
Sbjct:  202 SRNWGQNWQSNSYLNGQSLSFVVTTSDRRSVVSFNVAPPTWSFGQTYTGGQFR 254          
The following BLAST results are available for this feature:
BLAST of CN181521 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
EXP16_ARATH5.733e-2390.57Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=... [more]
EXPA4_ARATH9.780e-2387.04Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 ... [more]
EXPA6_ARATH1.277e-2287.04Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 ... [more]
EXPA3_ARATH1.668e-2287.04Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 ... [more]
EXPA9_ARATH4.543e-2083.33Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 ... [more]
EXPA7_ORYSJ4.543e-2079.63Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA2_ORYSJ2.852e-1469.23Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP21_ORYSJ2.852e-1465.38Expansin-A21 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP15_ARATH2.852e-1466.04Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=... [more]
EXPA5_ARATH8.298e-1464.15Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001B04_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181521 ID=CN181521; Name=CN181521; organism=Citrus sinensis; type=EST; length=707bp
TTTTTTTTTTTTTTTTTAAGAAAAGCAAACCAAATATCTTGCATTAATTC
GATATTTAAGTTACTACATTATATATACCAGCACCACCACCACCTCCATC
ATCTTCATAATACACTTAATAATATTACAACACTAAACGAAATATAAAAG
CTAATTAATTAAAGCTGCGGGCTACATCATTCCACTGCAGCCGCTTCAGC
CCTCATCTAGCTTTCCCTAAACACCAATCATTCAACAACAAAGCCATTAA
TTAACCCACCAATCAAAAAGAAACCCAAAAAAAATGAAAATGATAATAAA
GTTTCACTCTTTTCCAACCAATTACCCTCCCGATTTTACTCTTTAACTTT
CACGTTCTCCAACAGGACCATCACCCACAAGTCAAAGCAAAAAAGAAAAA
TATACATATATATATATTTAAAGTTATAATAAGAAAGGGTAAAATTGGAA
AATGGCCATGGCGGGAAAGATTGATTAATTATTTTTTTTCTATTTTTTTA
AAACTCCTCCGTTAACTTAGACTCTGAAATTCTTTCCAACGAATGTTTGA
CCAAACTGCCAGTTAGCTGGCACAATGTTCCACGAGGTGGAGCTGCGTCG
GTCACTGGCTTTCACCCTAAACGAAAGTGACTGCCCTACCAGCACTGCGT
TAGACTGCCAGTTTTGGCCCCAGTTACGGGCTCATGCTCATCCAGCCAGT
TCTTTGA
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