CX300700 | Citrus Genome Database

Overview


Name	CX300700
Unique Name	CX300700
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	401

Libraries


Library Name	Type
PhyRootSw1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX300700 vs. ExPASy Swiss-Prot
Match: PS6AA_ARATH (26S protease regulatory subunit 6A homolog A OS=Arabidopsis thaliana GN=RPT5A PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.552e-55
Identity = 80/83 (96.39%), Postives = 82/83 (98.80%), Query Frame = 2

Query:  152 SEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMNVHPDVN 400
            SEVSGDREVQRTMLELLNQLDGFSSD+RIKVIAATNRADILDPALMRSGRLDRKIE PHP+EEARARILQIHSRKMNVHPDVN
Sbjct:  283 SEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVN 365

HSP 2 Score: 75.8702 bits (185), Expect = 1.552e-55
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 3

Query:   24 IGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFD 134
            IGDGAKLVRDAFQLAKEK+PCIIFIDEIDAIGTKRFD
Sbjct:  246 IGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGTKRFD 282

[Close]

BLAST of CX300700 vs. ExPASy Swiss-Prot
Match: PRS6A_BRACM (26S protease regulatory subunit 6A homolog OS=Brassica campestris GN=TBP1 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.552e-55
Identity = 80/83 (96.39%), Postives = 82/83 (98.80%), Query Frame = 2

Query:  152 SEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMNVHPDVN 400
            SEVSGDREVQRTMLELLNQLDGFSSD+RIKVIAATNRADILDPALMRSGRLDRKIE PHP+EEARARILQIHSRKMNVHPDVN
Sbjct:  283 SEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVN 365

HSP 2 Score: 75.8702 bits (185), Expect = 1.552e-55
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 3

Query:   24 IGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFD 134
            IGDGAKLVRDAFQLAKEK+PCIIFIDEIDAIGTKRFD
Sbjct:  246 IGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGTKRFD 282

[Close]

BLAST of CX300700 vs. ExPASy Swiss-Prot
Match: PRS6A_SOLLC (26S protease regulatory subunit 6A homolog OS=Solanum lycopersicum GN=TBP1 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.552e-55
Identity = 80/83 (96.39%), Postives = 82/83 (98.80%), Query Frame = 2

Query:  152 SEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMNVHPDVN 400
            SEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIE PHP+EEARARILQIHSRKMNV+PDVN
Sbjct:  282 SEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVNPDVN 364

HSP 2 Score: 77.0258 bits (188), Expect = 1.552e-55
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 3

Query:   24 IGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFD 134
            IGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFD
Sbjct:  245 IGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFD 281

[Close]

BLAST of CX300700 vs. ExPASy Swiss-Prot
Match: PRS6A_ORYSJ (26S protease regulatory subunit 6A homolog OS=Oryza sativa subsp. japonica GN=TBP1 PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.023e-55
Identity = 80/83 (96.39%), Postives = 82/83 (98.80%), Query Frame = 2

Query:  152 SEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMNVHPDVN 400
            SEVSGDREVQRTMLELLNQLDGFSSD+RIKVIAATNRADILDPALMRSGRLDRKIE PHPSEEARARILQIHSRKMNV+PDVN
Sbjct:  288 SEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPSEEARARILQIHSRKMNVNPDVN 370

HSP 2 Score: 77.0258 bits (188), Expect = 2.023e-55
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 3

Query:   24 IGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFD 134
            IGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFD
Sbjct:  251 IGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFD 287

[Close]

BLAST of CX300700 vs. ExPASy Swiss-Prot
Match: PS6AB_ARATH (26S protease regulatory subunit 6A homolog B OS=Arabidopsis thaliana GN=RPT5B PE=1 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 2.392e-53
Identity = 78/83 (93.98%), Postives = 80/83 (96.39%), Query Frame = 2

Query:  152 SEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMNVHPDVN 400
            SEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIE PHP+EEAR RILQIHSRKMNV+ DVN
Sbjct:  282 SEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARGRILQIHSRKMNVNADVN 364

HSP 2 Score: 74.3294 bits (181), Expect = 2.392e-53
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 3

Query:   24 IGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFD 134
            IGDGAKLVRDAF LAKEKSPCIIFIDEIDAIGTKRFD
Sbjct:  245 IGDGAKLVRDAFLLAKEKSPCIIFIDEIDAIGTKRFD 281

[Close]

BLAST of CX300700 vs. ExPASy Swiss-Prot
Match: PRS6A_DICDI (26S protease regulatory subunit 6A homolog OS=Dictyostelium discoideum GN=psmC3 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.360e-47
Identity = 73/83 (87.95%), Postives = 75/83 (90.36%), Query Frame = 2

Query:  152 SEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMNVHPDVN 400
            SEVSGDREVQRTMLELLNQLDGFSSD  IKVIAATNR DILDPAL+RSGRLDRKIE P P+EEARA ILQIHSRKMNV  DVN
Sbjct:  280 SEVSGDREVQRTMLELLNQLDGFSSDANIKVIAATNRIDILDPALLRSGRLDRKIEFPLPNEEARAHILQIHSRKMNVSADVN 362

HSP 2 Score: 68.5514 bits (166), Expect = 1.360e-47
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 3

Query:   24 IGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFD 134
            IGDGAKLVRDAF LAKEK P IIFIDE+DAIGTKRFD
Sbjct:  243 IGDGAKLVRDAFALAKEKGPTIIFIDELDAIGTKRFD 279

[Close]

BLAST of CX300700 vs. ExPASy Swiss-Prot
Match: PRS6A_MOUSE (26S protease regulatory subunit 6A OS=Mus musculus GN=Psmc3 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.132e-46
Identity = 68/83 (81.93%), Postives = 75/83 (90.36%), Query Frame = 2

Query:  152 SEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMNVHPDVN 400
            SE +GDREVQRTMLELLNQLDGF  + ++KVIAATNR DILDPAL+RSGRLDRKIE P P+EEARARI+QIHSRKMNV PDVN
Sbjct:  301 SEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVN 383

HSP 2 Score: 68.9366 bits (167), Expect = 1.132e-46
Identity = 33/37 (89.19%), Postives = 35/37 (94.59%), Query Frame = 3

Query:   24 IGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFD 134
            IGDGAKLVRDAF LAKEK+P IIFIDE+DAIGTKRFD
Sbjct:  264 IGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFD 300

[Close]

BLAST of CX300700 vs. ExPASy Swiss-Prot
Match: PRS6A_RAT (26S protease regulatory subunit 6A OS=Rattus norvegicus GN=Psmc3 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.132e-46
Identity = 68/83 (81.93%), Postives = 75/83 (90.36%), Query Frame = 2

Query:  152 SEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMNVHPDVN 400
            SE +GDREVQRTMLELLNQLDGF  + ++KVIAATNR DILDPAL+RSGRLDRKIE P P+EEARARI+QIHSRKMNV PDVN
Sbjct:  298 SEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVN 380

HSP 2 Score: 68.9366 bits (167), Expect = 1.132e-46
Identity = 33/37 (89.19%), Postives = 35/37 (94.59%), Query Frame = 3

Query:   24 IGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFD 134
            IGDGAKLVRDAF LAKEK+P IIFIDE+DAIGTKRFD
Sbjct:  261 IGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFD 297

[Close]

BLAST of CX300700 vs. ExPASy Swiss-Prot
Match: PRS6A_HUMAN (26S protease regulatory subunit 6A OS=Homo sapiens GN=PSMC3 PE=1 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 1.132e-46
Identity = 68/83 (81.93%), Postives = 75/83 (90.36%), Query Frame = 2

Query:  152 SEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMNVHPDVN 400
            SE +GDREVQRTMLELLNQLDGF  + ++KVIAATNR DILDPAL+RSGRLDRKIE P P+EEARARI+QIHSRKMNV PDVN
Sbjct:  298 SEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVN 380

HSP 2 Score: 68.9366 bits (167), Expect = 1.132e-46
Identity = 33/37 (89.19%), Postives = 35/37 (94.59%), Query Frame = 3

Query:   24 IGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFD 134
            IGDGAKLVRDAF LAKEK+P IIFIDE+DAIGTKRFD
Sbjct:  261 IGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFD 297

[Close]

BLAST of CX300700 vs. ExPASy Swiss-Prot
Match: PR6AA_XENLA (26S protease regulatory subunit 6A-A OS=Xenopus laevis GN=psmc3-A PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.924e-46
Identity = 68/83 (81.93%), Postives = 75/83 (90.36%), Query Frame = 2

Query:  152 SEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMNVHPDVN 400
            SE +GDREVQRTMLELLNQLDGF  + ++KVIAATNR DILDPAL+RSGRLDRKIE P P+EEARARI+QIHSRKMNV PDVN
Sbjct:  282 SEKAGDREVQRTMLELLNQLDGFQPNMQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVN 364

HSP 2 Score: 68.9366 bits (167), Expect = 1.924e-46
Identity = 33/37 (89.19%), Postives = 35/37 (94.59%), Query Frame = 3

Query:   24 IGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFD 134
            IGDGAKLVRDAF LAKEK+P IIFIDE+DAIGTKRFD
Sbjct:  245 IGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFD 281

The following BLAST results are available for this feature:

BLAST of CX300700 vs. ExPASy Swiss-Prot

BLAST of CX300700 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 270


Match Name	E-value	Identity	Description
PS6AA_ARATH	1.552e-55	96.39	26S protease regulatory subunit 6A homolog A OS=Ar...	[more]
PRS6A_BRACM	1.552e-55	96.39	26S protease regulatory subunit 6A homolog OS=Bras...	[more]
PRS6A_SOLLC	1.552e-55	96.39	26S protease regulatory subunit 6A homolog OS=Sola...	[more]
PRS6A_ORYSJ	2.023e-55	96.39	26S protease regulatory subunit 6A homolog OS=Oryz...	[more]
PS6AB_ARATH	2.392e-53	93.98	26S protease regulatory subunit 6A homolog B OS=Ar...	[more]
PRS6A_DICDI	1.360e-47	87.95	26S protease regulatory subunit 6A homolog OS=Dict...	[more]
PRS6A_MOUSE	1.132e-46	81.93	26S protease regulatory subunit 6A OS=Mus musculus...	[more]
PRS6A_RAT	1.132e-46	81.93	26S protease regulatory subunit 6A OS=Rattus norve...	[more]
PRS6A_HUMAN	1.132e-46	81.93	26S protease regulatory subunit 6A OS=Homo sapiens...	[more]
PR6AA_XENLA	1.924e-46	81.93	26S protease regulatory subunit 6A-A OS=Xenopus la...	[more]

Pages

Properties


Property Name	Value
Genbank description	C08001C09SK PhyRootSw1 Citrus sinensis cDNA clone C08001C09, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX300700 ID=CX300700; Name=CX300700; organism=Citrus sinensis; type=EST; length=401bp
CTCGTGCCGAATTCGGCACGAGGATTGGAGATGGAGCCAAACTAGTTCGT
GATGCCTTTCAACTTGCAAAGGAGAAGTCCCCCTGCATTATTTTCATCGA
TGAAATTGACGCAATTGGTACAAAGCGGTTTGACAGGCTCACTGTGACTG
CAGTGAAGTGAGTGGAGACAGGGAGGTGCAGCGAACTATGTTAGAGTTGC
TCAATCAGCTAGATGGATTTAGTAGCGATGATCGGATTAAGGTGATAGCA
GCAACAAATCGTGCTGATATCCTGGACCCTGCTCTTATGCGATCTGGTCG
TTTGGATCGCAAGATCGAGTTACCACATCCGAGTGAGGAAGCTAGAGCTC
GCATTCTGCAAATCCATTCGAGGAAGATGAATGTTCACCCAGATGTCAAC
T