CX300699

Overview
NameCX300699
Unique NameCX300699
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length395
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX300699 vs. ExPASy Swiss-Prot
Match: Y1684_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana GN=At1g06840 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 2.232e-15
Identity = 43/89 (48.31%), Postives = 58/89 (65.17%), Query Frame = 3 
Query:  129 MRRHARYQHSLSRKRLSTKISMKIDGVKGFKFKELAMATAYFSSSTXXXXXXXXXXXXXILSDNTTVAIKRAEEGSLQGQNEFLTEIKL 395
            MR+  R   +++R++ S+K S+KI+GVK F + ELA+AT  F+SST              L   T VAIKRA+EGSLQG+ EFLTEI+L
Sbjct:  584 MRKRMRGYSAVARRKRSSKASLKIEGVKSFTYAELALATDNFNSSTQIGQGGYGKVYKGTLGSGTVVAIKRAQEGSLQGEKEFLTEIEL 672
The following BLAST results are available for this feature:
BLAST of CX300699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1684_ARATH2.232e-1548.31Probable LRR receptor-like serine/threonine-protei... [more]
back to top
Properties
Property NameValue
Genbank descriptionC08001C07SK PhyRootSw1 Citrus sinensis cDNA clone C08001C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300699 ID=CX300699; Name=CX300699; organism=Citrus sinensis; type=EST; length=395bp
GAGGGCCTTATTCAAATCTGAATTTCAACAGTCAAAGCAAAGGTATTAGT
GGGGGCATTTTGGCAGCAATTGTAGTAGGGGCCGTTGCCTCTGCTGTGGC
AATAACTGCAGCTGTAACACTTCTGGTAATGAGAAGGCATGCTAGATATC
AACACTCATTATCAAGGAAACGATTATCCACGAAGATATCTATGAAAATT
GATGGGGTGAAAGGCTTCAAGTTTAAAGAATTGGCAATGGCAACTGCCTA
TTTCAGCAGTTCAACTCAAGTTGGTCAAGGAGGTTATGGGAAGGTTTATA
AAGGCATTTTGTCTGACAATACAACCGTTGCCATAAAGCGTGCTGAAGAA
GGATCCTTACAGGGCCAAAATGAATTCTTGACTGAGATAAAATTA
back to top