CX300698

Overview
NameCX300698
Unique NameCX300698
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length406
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig963 contig Csv1_Contig963:334..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300698 vs. ExPASy Swiss-Prot
Match: ASOL_BRANA (L-ascorbate oxidase homolog OS=Brassica napus GN=Bp10 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.333e-36
Identity = 74/138 (53.62%), Postives = 96/138 (69.57%), Query Frame = 1
Query:    1 ASGPRPNPQGSYHYGLINISRTIKLESSAGQVNGKQRYAVNSVSFIPADTPLKLADYFKIGG-VFRVGSIQDQPTG---GNIYLDTSVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNL 402
            AS  RPNPQGSYHYG INI+RTIKL ++ G+V+GK R+A+N VS    +TPLKLA+YF I   VF+  +I D PT     NI ++ +V+    R F+E+VF+NHE  VQSWH+DGY+F+ V +  G WTP  R  YNL
Sbjct:  333 ASAARPNPQGSYHYGKINITRTIKLVNTQGKVDGKLRFALNGVSHTEPETPLKLAEYFGISDKVFKYDTITDDPTPEQIKNIKIEPNVLNITHRTFVEVVFENHEKSVQSWHLDGYSFFSVAVEPGTWTPEKRKNYNL 470          
BLAST of CX300698 vs. ExPASy Swiss-Prot
Match: ASOL_TOBAC (L-ascorbate oxidase homolog OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.122e-30
Identity = 62/137 (45.26%), Postives = 88/137 (64.23%), Query Frame = 1
Query:    1 ASGPRPNPQGSYHYGLINISRTIKLESSAGQVNGKQRYAVNSVSFIPADTPLKLADYF-KIGGVFRVGSIQDQPTG--GNIYLDTSVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYNL 402
            AS  RPNPQGSYHYG INI+RTIK+ +S  QV GK RY +N +S    +TPLKL +YF      F+   + D+       + + T+V  A +R F+EI+F+NHE  ++++H+DGY+F+ V +  G W+P  R  YNL
Sbjct:  335 ASAARPNPQGSYHYGQINITRTIKIFNSMSQVGGKLRYGLNGISHTNGETPLKLVEYFGATNKAFKYDLMADEAPADPSKLTIATNVKNATYRNFVEIIFENHEKTIRTYHLDGYSFFAVAVEPGRWSPEKRKNYNL 471          
BLAST of CX300698 vs. ExPASy Swiss-Prot
Match: SKS1_ARATH (Monocopper oxidase-like protein SKS1 OS=Arabidopsis thaliana GN=SKS1 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.115e-29
Identity = 60/134 (44.78%), Postives = 91/134 (67.91%), Query Frame = 1
Query:    1 ASGPRPNPQGSYHYGLINISRTIKLESSAGQV-NGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSIQDQPTGGNIYLDTSVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYN 399
            ASG RPNPQGS+HYG INI+ T  L S    + NG  R  +N +SF+   TP++LAD  K+ G +++    D+P    + LD S++ A ++GFI++VFQN++  +QS+H+DGY+F+VVGM+ G+W+   +  YN
Sbjct:  348 ASGARPNPQGSFHYGQINITNTYILRSLPPTIINGALRATLNGISFVNPSTPVRLADRNKVKGAYKL-DFPDRPFNRPLRLDRSMINATYKGFIQVVFQNNDTKIQSFHVDGYSFFVVGMDFGIWSEDKKGSYN 480          
BLAST of CX300698 vs. ExPASy Swiss-Prot
Match: SKS2_ARATH (Monocopper oxidase-like protein SKS2 OS=Arabidopsis thaliana GN=SKS2 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.210e-28
Identity = 60/135 (44.44%), Postives = 91/135 (67.41%), Query Frame = 1
Query:    1 ASGPRPNPQGSYHYGLINISRTIKLES-SAGQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSIQDQPTGGNI-YLDTSVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYN 399
            ASG RPNPQGS+HYG INI+RT  L S    ++NGK R  +N +SF+   TP++LAD  K+ G + +    D+P    +  L +S++ A ++GFI+++FQN++  +QS+HIDGY F+VV M+ G+W+    + YN
Sbjct:  347 ASGARPNPQGSFHYGQINITRTYILRSLPPTKINGKLRATLNGISFVNPSTPMRLADDHKVKGDYML-DFPDRPLDEKLPRLSSSIINATYKGFIQVIFQNNDTKIQSFHIDGYAFYVVAMDFGIWSEDRNSSYN 480          
BLAST of CX300698 vs. ExPASy Swiss-Prot
Match: SKU5_ARATH (Monocopper oxidase-like protein SKU5 OS=Arabidopsis thaliana GN=SKU5 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.041e-25
Identity = 56/134 (41.79%), Postives = 85/134 (63.43%), Query Frame = 1
Query:    1 ASGPRPNPQGSYHYGLINISRTIKLESSAG-QVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRVGSIQDQPTGGNIYLDTSVMGADFRGFIEIVFQNHENIVQSWHIDGYNFWVVGMNGGVWTPASRNEYN 399
            ASG RPNPQGS+ YG IN++    L +     ++GK+R  +N +SF    TP++LAD  K+  V+++     +P  G   + TS++   +RGF+E+V QN++  +QS+H+ GY F+VVGM+ G WT  SR  YN
Sbjct:  345 ASGARPNPQGSFKYGSINVTDVYVLRNMPPVTISGKRRTTLNGISFKNPSTPIRLADKLKVKDVYKL-DFPKRPLTGPAKVATSIINGTYRGFMEVVLQNNDTKMQSYHMSGYAFFVVGMDYGEWTENSRGTYN 477          
The following BLAST results are available for this feature:
BLAST of CX300698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ASOL_BRANA2.333e-3653.62L-ascorbate oxidase homolog OS=Brassica napus GN=B... [more]
ASOL_TOBAC1.122e-3045.26L-ascorbate oxidase homolog OS=Nicotiana tabacum P... [more]
SKS1_ARATH2.115e-2944.78Monocopper oxidase-like protein SKS1 OS=Arabidopsi... [more]
SKS2_ARATH5.210e-2844.44Monocopper oxidase-like protein SKS2 OS=Arabidopsi... [more]
SKU5_ARATH7.041e-2541.79Monocopper oxidase-like protein SKU5 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionC08001C06SK PhyRootSw1 Citrus sinensis cDNA clone C08001C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300698 ID=CX300698; Name=CX300698; organism=Citrus sinensis; type=EST; length=406bp
GCAAGTGGACCAAGACCAAACCCACAAGGATCATACCACTATGGTCTTAT
TAACATTTCAAGAACTATCAAGCTAGAAAGTTCAGCTGGTCAAGTCAATG
GCAAGCAGAGATATGCAGTTAACAGTGTGTCTTTCATCCCAGCTGACACT
CCCCTGAAGCTAGCAGATTACTTCAAAATTGGAGGTGTTTTTCGCGTCGG
TAGCATCCAGGATCAGCCAACCGGTGGTAACATTTACCTTGACACATCAG
TTATGGGTGCTGACTTCAGAGGCTTTATTGAAATTGTGTTCCAAAATCAT
GAAAATATTGTACAGAGCTGGCACATTGATGGATACAACTTCTGGGTAGT
CGGAATGAATGGTGGAGTGTGGACACCGGCCAGTCGTAATGAGTACAATT
TGAGAG
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