EY666071
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of EY666071 vs. ExPASy Swiss-Prot
Match: DCL4_ORYSJ (Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica GN=DCL4 PE=2 SV=1) HSP 1 Score: 225.713 bits (574), Expect = 2.392e-58 Identity = 126/256 (49.22%), Postives = 172/256 (67.19%), Query Frame = 2 Query: 59 EIMQAQQFQEMFLKVILDRSEFNSEFVPLGKDDYCESSSSTFYLLLPV----IFHKNSVDWKIIRRCLSSPVFGTPGGSVDRKSLPSHGPLQLHNGWSSESDVENSLVYATHKKWFYLVTNIVFEKNGYSPYKDSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLLHNRKLE--DSESHELEEYFDDLPPELCQLKIIGFSKDIGSSLSLLPSIMHRLENLLVAIELKHLLSASFPEGAEVSAEMLLKGL 808 ++M A +FQEM LK++LDRSEF S V LG D E +S TFYLLLP+ + +DW + RCLSSP+F P S S+ L+L +G S++DV S+V++ H F+ V I+ E N +S + +++ +H + I L HP+QPLL+AK +F LRNLLHNR E +SE EL E+F +LPPELC LK+IGFSKD+GSSLSLLPS+M+RLENLLVAIELK ++ +SFPE +++SA +L+ L Sbjct: 780 KMMLAHKFQEMCLKILLDRSEFTSPHVKLGNDVTLEINS-TFYLLLPIKQKCYGDRFMIDWPAVERCLSSPIFKDPIDVSVHASYSSNESLRLLDGIFSKTDVVGSVVFSPHNNIFFFVDGILDEINAWSEHS---GATYAEHFKERFRIELSHPEQPLLKAKQIFNLRNLLHNRLPETTESEGRELLEHFVELPPELCSLKVIGFSKDMGSSLSLLPSLMYRLENLLVAIELKDVMLSSFPEASQISASGILEAL 1031
BLAST of EY666071 vs. ExPASy Swiss-Prot
Match: DCL4_ARATH (Dicer-like protein 4 OS=Arabidopsis thaliana GN=DCL4 PE=1 SV=1) HSP 1 Score: 208.764 bits (530), Expect = 3.026e-53 Identity = 123/254 (48.43%), Postives = 154/254 (60.63%), Query Frame = 2 Query: 59 EIMQAQQFQEMFLKVILDRSEFNSEFVPLGKDDYCESSSSTFYLLLPVIFHKN----SVDWKIIRRCLSSPVFGTPGGSVDRKSLPSHGPLQLHNGWSSESDVENSLVYATHKKWFYLVTNIVFEKNGYSPYKDSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLLHNRKLEDSESHELEEYFDDLPPELCQLKIIGFSKDIGSSLSLLPSIMHRLENLLVAIELKHLLSASFPEGAEVSAEMLLKGL 808 EI A+ FQE+ LKV+ +R E +FVPL D +S STFYLLLP+ H SVDW IR CLSSP+F TP V+ PS L+L NG + DV+NSLV+ T+ K FY V +I +NG+SP K+S + SHV+ +++L +E EL+EYF ++PPEL LKI G SKDIGSSLSLLPSIMHR+ENLLVAIELKH+LSAS PE AEVS +L+ L Sbjct: 832 EIRLAELFQEIALKVLFERGELIPDFVPLELQDSSRTSKSTFYLLLPLCLHDGESVISVDWVTIRNCLSSPIFKTPSVLVEDIFPPSGSHLKLANGCWNIDDVKNSLVFTTYSKQFYFVADICHGRNGFSPVKESSTKSHVE---------------------SIYKL-----------TEPQELDEYFIEIPPELSHLKIKGLSKDIGSSLSLLPSIMHRMENLLVAIELKHVLSASIPEIAEVSGHRVLEAL 1053
BLAST of EY666071 vs. ExPASy Swiss-Prot
Match: DCL2B_ORYSJ (Endoribonuclease Dicer homolog 2b OS=Oryza sativa subsp. japonica GN=DCL2B PE=2 SV=2) HSP 1 Score: 74.3294 bits (181), Expect = 8.907e-13 Identity = 63/239 (26.36%), Postives = 112/239 (46.86%), Query Frame = 2 Query: 59 EIMQAQQFQEMFLKVIL--DRSE-------FNSEFVPLGKDDYCESSSSTFYLLLPVIFHKNSVDWKIIRRCLSSPVFGTPGGSVDR-KSLPSHGPLQLHNGWSSESDVENSLVYATHKKWFYLVTNIV-FEKNGYSPYKDSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLLHNRKLEDSESHELEEYFDDLPPELCQLKIIGFSKDIGSSLSLLPSIMHRLENLLVAIELK 742 +++ A++FQ L ++ D E F+ VP+G YLLLP++ +DW ++ SSP++ + S LQ +G ++NS+V H FY+++ + + N P D ++ D+ + +G+ L QPLL ++RN LHN + E + Y +LPPELC++ + S + S +PSIM R++ +L++++LK Sbjct: 720 QVIIARRFQTTILSFLIGDDHLEVSNGIKYFHEMQVPIG----------VVYLLLPLV--SGRIDWCSMKFS-SSPIYEANNKHMTHCHSCRDIDLLQTKDGPFCRCILKNSIVCTPHNNIFYVISGFLDLDANSRLPQHDGTVVTYKDYFKTRHGLTLTFENQPLLAGSKHVKVRNFLHNYYYK-KEKEPGDRYSVELPPELCRIIMSPVSANNLHIFSYVPSIMFRIQCMLLSVKLK 944
BLAST of EY666071 vs. ExPASy Swiss-Prot
Match: DCL2A_ORYSJ (Endoribonuclease Dicer homolog 2a OS=Oryza sativa subsp. japonica GN=DCL2A PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 8.907e-13 Identity = 63/239 (26.36%), Postives = 111/239 (46.44%), Query Frame = 2 Query: 59 EIMQAQQFQEMFLKVIL--DRSE-------FNSEFVPLGKDDYCESSSSTFYLLLPVIFHKNSVDWKIIRRCLSSPVFGTPGGSVDR-KSLPSHGPLQLHNGWSSESDVENSLVYATHKKWFYLVTNIV-FEKNGYSPYKDSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLLHNRKLEDSESHELEEYFDDLPPELCQLKIIGFSKDIGSSLSLLPSIMHRLENLLVAIELK 742 +++ A++FQ L ++ D E F+ VP+G YLLLP++ +DW ++ SSP++ + S LQ +G ++NS+V H FY+++ + + N P D ++ D+ + +G+ L QPLL ++RN LHN E + Y +LPPELC++ + S + S +PSIM R++ +L++++LK Sbjct: 749 QVIIARRFQTTILSFLIGDDHLEVSNGIKYFHEMQVPIG----------VVYLLLPLV--SGRIDWCSMKFS-SSPIYEANNKHMTHCHSCKDIDLLQTKDGPFCRCILKNSIVCTPHNNIFYVISGFLDLDANSCLPQHDGTVVTYKDYFKTRHGLTLTFENQPLLAGSKHVKVRNFLHNC-YSKKEKEPGDRYSVELPPELCRIIMSPVSANNLHIFSYVPSIMFRIQCMLLSVKLK 973
BLAST of EY666071 vs. ExPASy Swiss-Prot
Match: DCL3B_ORYSJ (Endoribonuclease Dicer homolog 3b OS=Oryza sativa subsp. japonica GN=DCL3B PE=2 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 3.385e-12 Identity = 70/263 (26.62%), Postives = 116/263 (44.11%), Query Frame = 2 Query: 59 EIMQAQQFQEMFLKVILDR-------SEFNSEFVPLGKDDYCESSSSTFYLLLPV-----IFHKNSVDWKIIRRCLSSPVFGTPGGSVDRKSLPSHGPLQLHNGWSSE-----------SDVENSLVYATHKKWFYLVTNIVFEKNGYSPY------KDSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLLHNR-KLEDSES-----HELEEYFDDLPPELCQLKIIGFSKDIGSSLSLLPSIMHRLENLLVAIELK 742 ++ + + FQE F I R S +F+ K + ++ + YLLLP+ I S+ W+ I C + D +P + Q G E S +++S+V + H Y V +++ + + K S +S VD+ YGI ++HP+QPLL K NLL ++ K D + E E+ +PPEL L + + DI S LLPS++HRL++L++A +L+ Sbjct: 776 QLGKGKLFQEFFFNGIFGRLFHGSRKSGAQRDFI-FKKGHEIQWNTESMYLLLPLRDSSYIQDDLSIHWEAIESCAGAVEQLWSSYQGDENVIPVNCIPQKRRGGQEEIIHLANKSLHCSSIKDSVVLSLHTGRIYTVLDLILDTTAEDSFDEMCKGKASPFTSFVDYYHQKYGIIIQHPEQPLLLLKQSHNAHNLLFSKLKYLDGSTGKPLLMEKEQIHARVPPEL--LIHLDVTTDILKSFYLLPSVIHRLQSLMLASQLR 1035
BLAST of EY666071 vs. ExPASy Swiss-Prot
Match: DICER_ARATH (Endoribonuclease Dicer homolog OS=Arabidopsis thaliana GN=CAF PE=1 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 2.194e-11 Identity = 46/163 (28.22%), Postives = 84/163 (51.53%), Query Frame = 2 Query: 305 SHGPLQLHNGWSSESDVENSLVYATHKKWFYLVTNIVFEKNGYSPYKDSDS-------SSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLLHNRKLEDSESHEL--EEYFDDLPPELCQLKIIGFSKDIGSSLSLLPSIMHRLENLLVAIELKHLLSASFP 766 S G L + +G D+ +V A H + V +I ++ + + + + +++ D+ YG+ L +QPL++ + + +NLL R + ES + + Y+ LPPELC + + S G+ LPSIM R+E++L+A++LK+L+S P Sbjct: 1195 SKGKLMMADGCMVAEDLIGKIVTAAHSGKRFYVDSICYDMSAETSFPRKEGYLGPLEYNTYADYYKQKYGVDLNCKQQPLIKGRGVSYCKNLLSPRFEQSGESETVLDKTYYVFLPPELCVVHPLSGSLIRGA--QRLPSIMRRVESMLLAVQLKNLISYPIP 1355 The following BLAST results are available for this feature:
BLAST of EY666071 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >EY666071 ID=EY666071; Name=EY666071; organism=Citrus sinensis; type=EST; length=815bpback to top |