EY666071

Overview
NameEY666071
Unique NameEY666071
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8034 contig Csv1_Contig8034:1..815. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY666071 vs. ExPASy Swiss-Prot
Match: DCL4_ORYSJ (Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica GN=DCL4 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.392e-58
Identity = 126/256 (49.22%), Postives = 172/256 (67.19%), Query Frame = 2
Query:   59 EIMQAQQFQEMFLKVILDRSEFNSEFVPLGKDDYCESSSSTFYLLLPV----IFHKNSVDWKIIRRCLSSPVFGTPGGSVDRKSLPSHGPLQLHNGWSSESDVENSLVYATHKKWFYLVTNIVFEKNGYSPYKDSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLLHNRKLE--DSESHELEEYFDDLPPELCQLKIIGFSKDIGSSLSLLPSIMHRLENLLVAIELKHLLSASFPEGAEVSAEMLLKGL 808
            ++M A +FQEM LK++LDRSEF S  V LG D   E +S TFYLLLP+       +  +DW  + RCLSSP+F  P       S  S+  L+L +G  S++DV  S+V++ H   F+ V  I+ E N +S +     +++ +H    + I L HP+QPLL+AK +F LRNLLHNR  E  +SE  EL E+F +LPPELC LK+IGFSKD+GSSLSLLPS+M+RLENLLVAIELK ++ +SFPE +++SA  +L+ L
Sbjct:  780 KMMLAHKFQEMCLKILLDRSEFTSPHVKLGNDVTLEINS-TFYLLLPIKQKCYGDRFMIDWPAVERCLSSPIFKDPIDVSVHASYSSNESLRLLDGIFSKTDVVGSVVFSPHNNIFFFVDGILDEINAWSEHS---GATYAEHFKERFRIELSHPEQPLLKAKQIFNLRNLLHNRLPETTESEGRELLEHFVELPPELCSLKVIGFSKDMGSSLSLLPSLMYRLENLLVAIELKDVMLSSFPEASQISASGILEAL 1031          
BLAST of EY666071 vs. ExPASy Swiss-Prot
Match: DCL4_ARATH (Dicer-like protein 4 OS=Arabidopsis thaliana GN=DCL4 PE=1 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 3.026e-53
Identity = 123/254 (48.43%), Postives = 154/254 (60.63%), Query Frame = 2
Query:   59 EIMQAQQFQEMFLKVILDRSEFNSEFVPLGKDDYCESSSSTFYLLLPVIFHKN----SVDWKIIRRCLSSPVFGTPGGSVDRKSLPSHGPLQLHNGWSSESDVENSLVYATHKKWFYLVTNIVFEKNGYSPYKDSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLLHNRKLEDSESHELEEYFDDLPPELCQLKIIGFSKDIGSSLSLLPSIMHRLENLLVAIELKHLLSASFPEGAEVSAEMLLKGL 808
            EI  A+ FQE+ LKV+ +R E   +FVPL   D   +S STFYLLLP+  H      SVDW  IR CLSSP+F TP   V+    PS   L+L NG  +  DV+NSLV+ T+ K FY V +I   +NG+SP K+S + SHV+                      +++L           +E  EL+EYF ++PPEL  LKI G SKDIGSSLSLLPSIMHR+ENLLVAIELKH+LSAS PE AEVS   +L+ L
Sbjct:  832 EIRLAELFQEIALKVLFERGELIPDFVPLELQDSSRTSKSTFYLLLPLCLHDGESVISVDWVTIRNCLSSPIFKTPSVLVEDIFPPSGSHLKLANGCWNIDDVKNSLVFTTYSKQFYFVADICHGRNGFSPVKESSTKSHVE---------------------SIYKL-----------TEPQELDEYFIEIPPELSHLKIKGLSKDIGSSLSLLPSIMHRMENLLVAIELKHVLSASIPEIAEVSGHRVLEAL 1053          
BLAST of EY666071 vs. ExPASy Swiss-Prot
Match: DCL2B_ORYSJ (Endoribonuclease Dicer homolog 2b OS=Oryza sativa subsp. japonica GN=DCL2B PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 8.907e-13
Identity = 63/239 (26.36%), Postives = 112/239 (46.86%), Query Frame = 2
Query:   59 EIMQAQQFQEMFLKVIL--DRSE-------FNSEFVPLGKDDYCESSSSTFYLLLPVIFHKNSVDWKIIRRCLSSPVFGTPGGSVDR-KSLPSHGPLQLHNGWSSESDVENSLVYATHKKWFYLVTNIV-FEKNGYSPYKDSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLLHNRKLEDSESHELEEYFDDLPPELCQLKIIGFSKDIGSSLSLLPSIMHRLENLLVAIELK 742
            +++ A++FQ   L  ++  D  E       F+   VP+G            YLLLP++     +DW  ++   SSP++      +    S      LQ  +G      ++NS+V   H   FY+++  +  + N   P  D    ++ D+  + +G+ L    QPLL      ++RN LHN   +  E    + Y  +LPPELC++ +   S +     S +PSIM R++ +L++++LK
Sbjct:  720 QVIIARRFQTTILSFLIGDDHLEVSNGIKYFHEMQVPIG----------VVYLLLPLV--SGRIDWCSMKFS-SSPIYEANNKHMTHCHSCRDIDLLQTKDGPFCRCILKNSIVCTPHNNIFYVISGFLDLDANSRLPQHDGTVVTYKDYFKTRHGLTLTFENQPLLAGSKHVKVRNFLHNYYYK-KEKEPGDRYSVELPPELCRIIMSPVSANNLHIFSYVPSIMFRIQCMLLSVKLK 944          
BLAST of EY666071 vs. ExPASy Swiss-Prot
Match: DCL2A_ORYSJ (Endoribonuclease Dicer homolog 2a OS=Oryza sativa subsp. japonica GN=DCL2A PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.907e-13
Identity = 63/239 (26.36%), Postives = 111/239 (46.44%), Query Frame = 2
Query:   59 EIMQAQQFQEMFLKVIL--DRSE-------FNSEFVPLGKDDYCESSSSTFYLLLPVIFHKNSVDWKIIRRCLSSPVFGTPGGSVDR-KSLPSHGPLQLHNGWSSESDVENSLVYATHKKWFYLVTNIV-FEKNGYSPYKDSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLLHNRKLEDSESHELEEYFDDLPPELCQLKIIGFSKDIGSSLSLLPSIMHRLENLLVAIELK 742
            +++ A++FQ   L  ++  D  E       F+   VP+G            YLLLP++     +DW  ++   SSP++      +    S      LQ  +G      ++NS+V   H   FY+++  +  + N   P  D    ++ D+  + +G+ L    QPLL      ++RN LHN      E    + Y  +LPPELC++ +   S +     S +PSIM R++ +L++++LK
Sbjct:  749 QVIIARRFQTTILSFLIGDDHLEVSNGIKYFHEMQVPIG----------VVYLLLPLV--SGRIDWCSMKFS-SSPIYEANNKHMTHCHSCKDIDLLQTKDGPFCRCILKNSIVCTPHNNIFYVISGFLDLDANSCLPQHDGTVVTYKDYFKTRHGLTLTFENQPLLAGSKHVKVRNFLHNC-YSKKEKEPGDRYSVELPPELCRIIMSPVSANNLHIFSYVPSIMFRIQCMLLSVKLK 973          
BLAST of EY666071 vs. ExPASy Swiss-Prot
Match: DCL3B_ORYSJ (Endoribonuclease Dicer homolog 3b OS=Oryza sativa subsp. japonica GN=DCL3B PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.385e-12
Identity = 70/263 (26.62%), Postives = 116/263 (44.11%), Query Frame = 2
Query:   59 EIMQAQQFQEMFLKVILDR-------SEFNSEFVPLGKDDYCESSSSTFYLLLPV-----IFHKNSVDWKIIRRCLSSPVFGTPGGSVDRKSLPSHGPLQLHNGWSSE-----------SDVENSLVYATHKKWFYLVTNIVFEKNGYSPY------KDSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLLHNR-KLEDSES-----HELEEYFDDLPPELCQLKIIGFSKDIGSSLSLLPSIMHRLENLLVAIELK 742
            ++ + + FQE F   I  R       S    +F+   K    + ++ + YLLLP+     I    S+ W+ I  C  +          D   +P +   Q   G   E           S +++S+V + H    Y V +++ +      +      K S  +S VD+    YGI ++HP+QPLL  K      NLL ++ K  D  +      E E+    +PPEL  L  +  + DI  S  LLPS++HRL++L++A +L+
Sbjct:  776 QLGKGKLFQEFFFNGIFGRLFHGSRKSGAQRDFI-FKKGHEIQWNTESMYLLLPLRDSSYIQDDLSIHWEAIESCAGAVEQLWSSYQGDENVIPVNCIPQKRRGGQEEIIHLANKSLHCSSIKDSVVLSLHTGRIYTVLDLILDTTAEDSFDEMCKGKASPFTSFVDYYHQKYGIIIQHPEQPLLLLKQSHNAHNLLFSKLKYLDGSTGKPLLMEKEQIHARVPPEL--LIHLDVTTDILKSFYLLPSVIHRLQSLMLASQLR 1035          
BLAST of EY666071 vs. ExPASy Swiss-Prot
Match: DICER_ARATH (Endoribonuclease Dicer homolog OS=Arabidopsis thaliana GN=CAF PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.194e-11
Identity = 46/163 (28.22%), Postives = 84/163 (51.53%), Query Frame = 2
Query:  305 SHGPLQLHNGWSSESDVENSLVYATHKKWFYLVTNIVFEKNGYSPYKDSDS-------SSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLLHNRKLEDSESHEL--EEYFDDLPPELCQLKIIGFSKDIGSSLSLLPSIMHRLENLLVAIELKHLLSASFP 766
            S G L + +G     D+   +V A H    + V +I ++ +  + +   +        +++ D+    YG+ L   +QPL++ + +   +NLL  R  +  ES  +  + Y+  LPPELC +  +  S   G+    LPSIM R+E++L+A++LK+L+S   P
Sbjct: 1195 SKGKLMMADGCMVAEDLIGKIVTAAHSGKRFYVDSICYDMSAETSFPRKEGYLGPLEYNTYADYYKQKYGVDLNCKQQPLIKGRGVSYCKNLLSPRFEQSGESETVLDKTYYVFLPPELCVVHPLSGSLIRGA--QRLPSIMRRVESMLLAVQLKNLISYPIP 1355          
The following BLAST results are available for this feature:
BLAST of EY666071 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
DCL4_ORYSJ2.392e-5849.22Endoribonuclease Dicer homolog 4 OS=Oryza sativa s... [more]
DCL4_ARATH3.026e-5348.43Dicer-like protein 4 OS=Arabidopsis thaliana GN=DC... [more]
DCL2B_ORYSJ8.907e-1326.36Endoribonuclease Dicer homolog 2b OS=Oryza sativa ... [more]
DCL2A_ORYSJ8.907e-1326.36Endoribonuclease Dicer homolog 2a OS=Oryza sativa ... [more]
DCL3B_ORYSJ3.385e-1226.62Endoribonuclease Dicer homolog 3b OS=Oryza sativa ... [more]
DICER_ARATH2.194e-1128.22Endoribonuclease Dicer homolog OS=Arabidopsis thal... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-102-013-E11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666071 ID=EY666071; Name=EY666071; organism=Citrus sinensis; type=EST; length=815bp
TTTAAAATAATAAGCCGTGACTGCAGTACGGTCGGAATTCCGGGTCGACC
CCGCGTCCGAGATTATGCAGGCTCAACAATTCCAAGAAATGTTCTTAAAA
GTCATCCTTGACAGATCAGAATTCAATTCTGAATTTGTTCCCTTAGGAAA
AGATGATTATTGTGAATCTAGCTCCTCAACTTTCTACTTGTTGCTTCCAG
TCATTTTTCACAAAAATTCCGTAGACTGGAAGATCATCAGAAGATGTTTA
TCATCTCCAGTTTTCGGGACTCCAGGAGGTTCTGTAGACAGAAAAAGTTT
GCCTTCTCATGGGCCATTGCAACTTCATAATGGTTGGAGCAGTGAAAGTG
ATGTTGAGAATAGCTTAGTGTATGCCACACACAAGAAGTGGTTTTACTTA
GTTACAAACATTGTTTTTGAAAAGAATGGCTACAGCCCATATAAAGATTC
GGATTCTTCAAGCCATGTGGATCACTTAATTAGCAGTTATGGCATTCACC
TTAAACATCCTAAACAACCTCTTTTGCGTGCAAAACCACTTTTTCGCTTA
CGCAACTTGCTACATAACAGAAAGCTGGAGGACTCAGAATCACATGAACT
AGAGGAGTACTTTGACGATTTGCCTCCTGAGCTTTGTCAATTAAAGATAA
TCGGCTTCTCTAAAGATATTGGGAGTTCACTATCTTTGTTGCCGTCAATC
ATGCACCGACTGGAAAACTTGCTTGTGGCCATAGAACTGAAGCACTTACT
ATCTGCCTCTTTCCCTGAGGGAGCTGAAGTTAGTGCTGAAATGCTTCTGA
AGGGACTCCCACCGA
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