CX300696

Overview
NameCX300696
Unique NameCX300696
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length412
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPAB5_ARATH (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Arabidopsis thaliana GN=At1g61700 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.562e-24
Identity = 49/66 (74.24%), Postives = 59/66 (89.39%), Query Frame = 3
Query:   48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNYNTMQ 245
            MI+PVRCFTCGKVIGNK+D YL+LL  +Y+  DAL+ LGL RYCCRRM++THVDLI+KLLNYNTM+
Sbjct:    1 MIVPVRCFTCGKVIGNKWDTYLELLQADYAEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTME 66          
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPAB5_BRANA (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Brassica napus PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.754e-24
Identity = 49/66 (74.24%), Postives = 58/66 (87.88%), Query Frame = 3
Query:   48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNYNTMQ 245
            MIIPVRCFTCGKVIGNK+D YLDLL  +Y+  DAL+ L L RYCCRRM++THVDLI+KLLNYNT++
Sbjct:    1 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLLNYNTLE 66          
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPAB5_CAEEL (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Caenorhabditis elegans GN=Y37E3.3 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.238e-21
Identity = 45/66 (68.18%), Postives = 56/66 (84.85%), Query Frame = 3
Query:   48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNYNTMQ 245
            MIIP+RCFTCGKVIG+K++ YL  L +EYS  DAL+ LGL RYCCRRM+L HVDLI+KLLNY+ ++
Sbjct:    1 MIIPIRCFTCGKVIGDKWETYLGFLQSEYSEGDALDALGLRRYCCRRMLLAHVDLIEKLLNYHPLE 66          
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPAB5_MOUSE (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Mus musculus GN=Polr2l PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.112e-21
Identity = 45/66 (68.18%), Postives = 55/66 (83.33%), Query Frame = 3
Query:   48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNYNTMQ 245
            MIIPVRCFTCGK++GNK++ YL LL  EY+  DAL+ LGL RYCCRRM+L HVDLI+KLLNY  ++
Sbjct:    1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLLNYAPLE 66          
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPAB5_HUMAN (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Homo sapiens GN=POLR2L PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.112e-21
Identity = 45/66 (68.18%), Postives = 55/66 (83.33%), Query Frame = 3
Query:   48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNYNTMQ 245
            MIIPVRCFTCGK++GNK++ YL LL  EY+  DAL+ LGL RYCCRRM+L HVDLI+KLLNY  ++
Sbjct:    1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLLNYAPLE 66          
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPAB5_CHILA (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Chinchilla lanigera GN=POLR2L PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.112e-21
Identity = 45/66 (68.18%), Postives = 55/66 (83.33%), Query Frame = 3
Query:   48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNYNTMQ 245
            MIIPVRCFTCGK++GNK++ YL LL  EY+  DAL+ LGL RYCCRRM+L HVDLI+KLLNY  ++
Sbjct:    1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLLNYAPLE 66          
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPAB5_BOVIN (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Bos taurus GN=POLR2L PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.112e-21
Identity = 45/66 (68.18%), Postives = 55/66 (83.33%), Query Frame = 3
Query:   48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNYNTMQ 245
            MIIPVRCFTCGK++GNK++ YL LL  EY+  DAL+ LGL RYCCRRM+L HVDLI+KLLNY  ++
Sbjct:    1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLLNYAPLE 66          
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPAB5_DROME (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Drosophila melanogaster GN=Rpb10 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.758e-21
Identity = 46/66 (69.70%), Postives = 55/66 (83.33%), Query Frame = 3
Query:   48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNYNTMQ 245
            MIIP+RCFTCGKVIGNK++ YL LL  EY+  DAL+ LGL RYCCRRM+L HVDLI+KLLNY  ++
Sbjct:    1 MIIPIRCFTCGKVIGNKWESYLGLLQAEYTEGDALDALGLKRYCCRRMLLGHVDLIEKLLNYAPLE 66          
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPAB5_DICDI (DNA-directed RNA polymerases I, II, and III subunit rpabc5 OS=Dictyostelium discoideum GN=polr2l PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.758e-21
Identity = 47/65 (72.31%), Postives = 54/65 (83.08%), Query Frame = 3
Query:   48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNYNTM 242
            MIIPVRCFTCGKVIGNK+D YL LL  +Y+  DAL+ L L RYCCRRM+LTHVDLI+KLLNY  +
Sbjct:    1 MIIPVRCFTCGKVIGNKWDAYLSLLQIDYTEGDALDALCLKRYCCRRMLLTHVDLIEKLLNYTPL 65          
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPAB5_SCHPO (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Schizosaccharomyces pombe GN=rpb10 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 3.982e-20
Identity = 44/65 (67.69%), Postives = 55/65 (84.62%), Query Frame = 3
Query:   48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNYNTM 242
            MIIP+RCF+CGKVIG+K+D YL LL  + +  +AL++LGL RYCCRRMILTHVDLI+KLL YN +
Sbjct:    1 MIIPIRCFSCGKVIGDKWDTYLTLLQEDNTEGEALDKLGLQRYCCRRMILTHVDLIEKLLCYNPL 65          
The following BLAST results are available for this feature:
BLAST of CX300696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
RPAB5_ARATH1.562e-2474.24DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB5_BRANA7.754e-2474.24DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB5_CAEEL1.238e-2168.18DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB5_MOUSE2.112e-2168.18DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB5_HUMAN2.112e-2168.18DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB5_CHILA2.112e-2168.18DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB5_BOVIN2.112e-2168.18DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB5_DROME2.758e-2169.70DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB5_DICDI2.758e-2172.31DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB5_SCHPO3.982e-2067.69DNA-directed RNA polymerases I, II, and III subuni... [more]

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Properties
Property NameValue
Genbank descriptionC08001C04SK PhyRootSw1 Citrus sinensis cDNA clone C08001C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300696 ID=CX300696; Name=CX300696; organism=Citrus sinensis; type=EST; length=412bp
AAGCAAACGACCCTTCTATCCTCTAGAACTCCTCACAAGATAGCATTATG
ATCATCCCTGTTCGTTGTTTTACCTGTGGTAAGGTTATTGGAAACAAATA
TGATTGGTATTTGGATTTATTAGTGAATGAATACTCTGCCAAGGATGCTT
TAAATGAACTTGGACTTACAAGATATTGTTGCCGAAGAATGATTTTGACC
CATGTTGACTTAATCCAAAAGCTTCTCAACTATAACACTATGCAACACCG
AACACTAGCAACGCCATCATCAAATACTGCTCCTACATCCACAACATCCG
CCAACGCTCCTTAAATTTCTTTGATCGGTGTCAGTTTTGTTCATAGAAGA
AGTTGTTTCATGTAAAAATTAATAATTCAAAAATCTTTTTTCAAAAAAAA
AAAAAAAAAAAA
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