FC921828

Overview
NameFC921828
Unique NameFC921828
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length303
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4344 contig Csv1_Contig4344:265..567. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921828 vs. ExPASy Swiss-Prot
Match: SDL5A_SOYBN (Dynamin-related protein 5A OS=Glycine max PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.741e-37
Identity = 78/100 (78.00%), Postives = 82/100 (82.00%), Query Frame = -2
Query:    3 ALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXVLESIVGKDFLPRGSGIVTGGPLVWQLHKLEEGSREYAEFLHIPRKRFTDIAAVRKGIQEETDRETG 302
            ALGDHGE SALPTLWDSLPAIA           VLES+VGKDFLPRGSGIVT  PLV QLHK+EEGSREYAEFLH+PRKRFTD  AVRK IQ+ETDRETG
Sbjct:   17 ALGDHGENSALPTLWDSLPAIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIEEGSREYAEFLHLPRKRFTDFVAVRKEIQDETDRETG 116          
BLAST of FC921828 vs. ExPASy Swiss-Prot
Match: SDLCA_SOYBN (Dynamin-related protein 12A OS=Glycine max PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 6.107e-37
Identity = 77/100 (77.00%), Postives = 82/100 (82.00%), Query Frame = -2
Query:    3 ALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXVLESIVGKDFLPRGSGIVTGGPLVWQLHKLEEGSREYAEFLHIPRKRFTDIAAVRKGIQEETDRETG 302
            ALGDHGE SALPTLWDSLPAIA           VLES+VGKDFLPRGSGIVT  PLV QLHK++EGSREYAEFLH+PRKRFTD  AVRK IQ+ETDRETG
Sbjct:   17 ALGDHGENSALPTLWDSLPAIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIDEGSREYAEFLHLPRKRFTDFVAVRKEIQDETDRETG 116          
BLAST of FC921828 vs. ExPASy Swiss-Prot
Match: DRP1A_ARATH (Dynamin-related protein 1A OS=Arabidopsis thaliana GN=DRP1A PE=1 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 1.504e-35
Identity = 74/100 (74.00%), Postives = 83/100 (83.00%), Query Frame = -2
Query:    3 ALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXVLESIVGKDFLPRGSGIVTGGPLVWQLHKLEEGSREYAEFLHIPRKRFTDIAAVRKGIQEETDRETG 302
            ALGDHG++SALPTLWDSLPAIA           VLESIVGKDFLPRGSGIVT  PLV QL K+++G+REYAEFLH+PRK+FTD AAVRK IQ+ETDRETG
Sbjct:   17 ALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRETG 116          
BLAST of FC921828 vs. ExPASy Swiss-Prot
Match: DRP1B_ARATH (Dynamin-related protein 1B OS=Arabidopsis thaliana GN=DRP1B PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.033e-32
Identity = 68/100 (68.00%), Postives = 81/100 (81.00%), Query Frame = -2
Query:    3 ALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXVLESIVGKDFLPRGSGIVTGGPLVWQLHKLEEGSREYAEFLHIPRKRFTDIAAVRKGIQEETDRETG 302
            ALGDHGE S+LPTLWDSLPAIA           VLES+VGKDFLPRG+GIVT  PLV QLH+++EG +EYAEF+H+P+K+FTD AAVR+ I +ETDRETG
Sbjct:   17 ALGDHGEGSSLPTLWDSLPAIAVVGGQSSGKSSVLESVVGKDFLPRGAGIVTRRPLVLQLHRIDEG-KEYAEFMHLPKKKFTDFAAVRQEISDETDRETG 115          
BLAST of FC921828 vs. ExPASy Swiss-Prot
Match: DRP1C_ARATH (Dynamin-related protein 1C OS=Arabidopsis thaliana GN=DRP1C PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 2.844e-26
Identity = 60/99 (60.61%), Postives = 71/99 (71.72%), Query Frame = -2
Query:    3 LGDHGEASALPTLWDSLPAIAXXXXXXXXXXXVLESIVGKDFLPRGSGIVTGGPLVWQLHKLEEGSREYAEFLHIPRKRFTDIAAVRKGIQEETDRETG 299
            LGDHG      +LW++LP +A           VLES+VG+DFLPRGSGIVT  PLV QLHK E+G+ EYAEFLH P+KRF D AAVRK I++ETDR TG
Sbjct:   21 LGDHGGEGM--SLWEALPTVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGTTEYAEFLHAPKKRFADFAAVRKEIEDETDRITG 117          
BLAST of FC921828 vs. ExPASy Swiss-Prot
Match: DRP1E_ARATH (Dynamin-related protein 1E OS=Arabidopsis thaliana GN=DRP1E PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.335e-26
Identity = 59/102 (57.84%), Postives = 75/102 (73.53%), Query Frame = -2
Query:    3 LGDHGE---ASALPTLWDSLPAIAXXXXXXXXXXXVLESIVGKDFLPRGSGIVTGGPLVWQLHKLEEGSREYAEFLHIPRKRFTDIAAVRKGIQEETDRETG 299
            LGD+G    ++A  +LW++LP +A           VLESIVG+DFLPRGSGIVT  PLV QLHK ++G+ EYAEFLH+P+K+FTD A VR+ IQ+ETDR TG
Sbjct:   21 LGDYGGGTGSNAFNSLWEALPTVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTDDGTEEYAEFLHLPKKQFTDFALVRREIQDETDRITG 122          
BLAST of FC921828 vs. ExPASy Swiss-Prot
Match: DRP1D_ARATH (Dynamin-related protein 1D OS=Arabidopsis thaliana GN=DRP1D PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 2.038e-24
Identity = 56/100 (56.00%), Postives = 74/100 (74.00%), Query Frame = -2
Query:    3 LGDHG-EASALPTLWDSLPAIAXXXXXXXXXXXVLESIVGKDFLPRGSGIVTGGPLVWQLHKLEEGSREYAEFLHIPRKRFTDIAAVRKGIQEETDRETG 299
            +GDHG +++AL +LW++LP++A           VLESIVG+DFLPRGSGIVT  PLV QLHK E G+ + AEFLH+  K+FT+ + VRK I++ETDR TG
Sbjct:   18 VGDHGGDSNALSSLWEALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTENGTEDNAEFLHLTNKKFTNFSLVRKEIEDETDRITG 117          
BLAST of FC921828 vs. ExPASy Swiss-Prot
Match: DYN1_CAEEL (Dynamin OS=Caenorhabditis elegans GN=dyn-1 PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 2.497e-14
Identity = 46/83 (55.42%), Postives = 51/83 (61.45%), Query Frame = -2
Query:    3 LPAIAXXXXXXXXXXXVLESIVGKDFLPRGSGIVTGGPLVWQLHKLEEGSREYAEFLHIPRKRFTDIAAVRKGIQEETDRETG 251
            LP IA           VLE+ VGKDFLPRGSGIVT  PL+ Q   L +   EYAEFLH    RF D  AVRK I++ETDR TG
Sbjct:   33 LPQIAVVGGQSAGKSSVLENFVGKDFLPRGSGIVTRRPLILQ---LIQDRNEYAEFLHKKGHRFVDFDAVRKEIEDETDRVTG 112          
BLAST of FC921828 vs. ExPASy Swiss-Prot
Match: DYN_DROME (Dynamin OS=Drosophila melanogaster GN=shi PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.259e-14
Identity = 44/83 (53.01%), Postives = 51/83 (61.45%), Query Frame = -2
Query:    3 LPAIAXXXXXXXXXXXVLESIVGKDFLPRGSGIVTGGPLVWQLHKLEEGSREYAEFLHIPRKRFTDIAAVRKGIQEETDRETG 251
            LP IA           VLE+ VGKDFLPRGSGIVT  PL+ Q   L  G  EY EFLHI  K+F+    +RK I++ETDR TG
Sbjct:   26 LPQIAVVGGQSAGKSSVLENFVGKDFLPRGSGIVTRRPLILQ---LINGVTEYGEFLHIKGKKFSSFDEIRKEIEDETDRVTG 105          
BLAST of FC921828 vs. ExPASy Swiss-Prot
Match: DYN1_RAT (Dynamin-1 OS=Rattus norvegicus GN=Dnm1 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.488e-14
Identity = 45/83 (54.22%), Postives = 50/83 (60.24%), Query Frame = -2
Query:    3 LPAIAXXXXXXXXXXXVLESIVGKDFLPRGSGIVTGGPLVWQLHKLEEGSREYAEFLHIPRKRFTDIAAVRKGIQEETDRETG 251
            LP IA           VLE+ VG+DFLPRGSGIVT  PLV Q   L   + EYAEFLH   K+FTD   VR  I+ ETDR TG
Sbjct:   31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQ---LVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 110          
The following BLAST results are available for this feature:
BLAST of FC921828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
SDL5A_SOYBN2.741e-3778.00Dynamin-related protein 5A OS=Glycine max PE=2 SV=... [more]
SDLCA_SOYBN6.107e-3777.00Dynamin-related protein 12A OS=Glycine max PE=1 SV... [more]
DRP1A_ARATH1.504e-3574.00Dynamin-related protein 1A OS=Arabidopsis thaliana... [more]
DRP1B_ARATH2.033e-3268.00Dynamin-related protein 1B OS=Arabidopsis thaliana... [more]
DRP1C_ARATH2.844e-2660.61Dynamin-related protein 1C OS=Arabidopsis thaliana... [more]
DRP1E_ARATH6.335e-2657.84Dynamin-related protein 1E OS=Arabidopsis thaliana... [more]
DRP1D_ARATH2.038e-2456.00Dynamin-related protein 1D OS=Arabidopsis thaliana... [more]
DYN1_CAEEL2.497e-1455.42Dynamin OS=Caenorhabditis elegans GN=dyn-1 PE=1 SV... [more]
DYN_DROME4.259e-1453.01Dynamin OS=Drosophila melanogaster GN=shi PE=1 SV=... [more]
DYN1_RAT9.488e-1454.22Dynamin-1 OS=Rattus norvegicus GN=Dnm1 PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC06052H05T7 RindPdigS Citrus sinensis cDNA clone C06052H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921828 ID=FC921828; Name=FC921828; organism=Citrus sinensis; type=EST; length=303bp
CCACCAGTCTCTCTATCAGTCTCCTCTTGAATCCCTTTCCTCACCGCAGC
AATATCGGTAAATCTTTTCCTTGGAATGTGAAGAAACTCTGCATATTCTC
TGCTGCCTTCTTCCAGTTTATGAAGCTGCCACACCAGAGGACCCCCTGTA
ACGATACCCGATCCCCGCGGTAAAAAGTCCTTGCCAACAATACTCTCCAA
CACTGATGACTTTCCAGAACTCTGGCCACCGACGACGGCGATAGCAGGAA
GAGAGTCCCAAAGAGTAGGCAATGCGCTGGCTTCACCGTGGTCGCCAAGA
GCC
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