EY666065

Overview
NameEY666065
Unique NameEY666065
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7308 contig Csv1_Contig7308:376..1169. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY666065 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.639e-22
Identity = 71/199 (35.68%), Postives = 102/199 (51.26%), Query Frame = 2
Query:   41 IAVSVDYRRAPEHPLPIAYEDSWDAVKWVASHVDGSGPEDWLNRNADFE-QVFYSGDSAGANIAHHMAIRNGGEIIDGFNVVGIVLIHPYFWGVEPVGSE-PTDVK---IRAGTERFWRFTCPSTSGLDDPWVNPCA-DGSSLASLGCARVLVFAAEKDFLCPRGWFYYEKLKESGWGGHVEIVESKGEQHVFHLINPT 619
            + VSV+YRRAPEH  P AY+D W A+KWV S       + ++    D + +VF SGDS+G NIAHH+A+R   E   G  V G +L++  F G E   SE   D K        + +W+   P  +  D P  NP   +G  L  L  A+ L+  +  D  C R   Y + L+E   G HV++V+ +     F+L+  T
Sbjct:  148 VVVSVNYRRAPEHRYPCAYDDGWTALKWVMS-------QPFMRSGGDAQARVFLSGDSSGGNIAHHVAVRAADE---GVKVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPEDADRDHPACNPFGPNGRRLGGLPFAKSLIIVSGLDLTCDRQLAYADALRED--GHHVKVVQCENATVGFYLLPNT 334          
BLAST of EY666065 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.003e-21
Identity = 69/183 (37.70%), Postives = 93/183 (50.82%), Query Frame = 2
Query:   20 LVSEANIIAVSVDYRRAPEHPLPIAYEDSWDAVKWVASHVDGSGPEDWLNRNADFE-QVFYSGDSAGANIAHHMAIRNGGEIIDGFNVVGIVLIHPYFWGVEPVGSEPT-DVKIRA---GTERFWRFTCPSTSGLDDPWVNPCAD-GSSLASLGCARVLVFAAEKDFLCPRGWFYYEKLKESG 550
            LV+   ++ VSVDYRR+PEH  P AY+D W+A+ WV S V       WL    D    V+ +GDS+G NIAH++A+R   E   G  V+G +L+HP F G E   SE T D K        + +WR   P     D P  NP    G SL  +   + LV  A  D +      Y + LK++G
Sbjct:  134 LVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKSRV-------WLQSGKDSNVYVYLAGDSSGGNIAHNVAVRATNE---GVKVLGNILLHPMFGGQERTQSEKTLDGKYFVTIQDRDWYWRAYLPEGEDRDHPACNPFGPRGQSLKGVNFPKSLVVVAGLDLVQDWQLAYVDGLKKTG 306          
BLAST of EY666065 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.730e-19
Identity = 65/184 (35.33%), Postives = 94/184 (51.09%), Query Frame = 2
Query:   20 LVSEANIIAVSVDYRRAPEHPLPIAYEDSWDAVKWVASHVDGSGPEDWLNRNADFE-QVFYSGDSAGANIAHHMAIRNGGEIIDGFNVVGIVLIHPYFWGVEPVGSEPT-----DVKIRAGTERFWRFTCPSTSGLDDPWVNPCAD-GSSLASLGCARVLVFAAEKDFLCPRGWFYYEKLKESG 550
            LV     + VSV+YRRAPE+P P AY+D W A+ WV S         WL    D +  +F +GDS+G NIAH++A+R G     G +V+G +L++P F G E   SE +      V +R   + +W+   P     + P  NP +  G SL  +   + LV  A  D +      Y E LK++G
Sbjct:  134 LVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWVNS-------RSWLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGE---SGIDVLGNILLNPMFGGNERTESEKSLDGKYFVTVR-DRDWYWKAFLPEGEDREHPACNPFSPRGKSLEGVSFPKSLVVVAGLDLIRDWQLAYAEGLKKAG 306          
BLAST of EY666065 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.711e-17
Identity = 64/184 (34.78%), Postives = 90/184 (48.91%), Query Frame = 2
Query:   20 LVSEANIIAVSVDYRRAPEHPLPIAYEDSWDAVKWVASHVDGSGPEDWLNRNADFE-QVFYSGDSAGANIAHHMAIRNGGEIIDGFNVVGIVLIHPYFWGVEPVGSEPT-----DVKIRAGTERFWRFTCPSTSGLDDPWVNPCADGS-SLASLGCARVLVFAAEKDFLCPRGWFYYEKLKESG 550
            LV     + VSV+YRRAPE+  P AY+D W  +KWV S         WL    D + ++F +GDS+G NI H++A+R     ID   V+G +L++P F G E   SE        V +R   + +WR   P     + P  +P    S SL  L   + LV  A  D +      Y E LK++G
Sbjct:  132 LVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWVNS-------SSWLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVESRID---VLGNILLNPMFGGTERTESEKRLDGKYFVTVR-DRDWYWRAFLPEGEDREHPACSPFGPRSKSLEGLSFPKSLVVVAGLDLIQDWQLKYAEGLKKAG 304          
The following BLAST results are available for this feature:
BLAST of EY666065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GID1_ORYSJ2.639e-2235.68Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
GI1L2_ARATH1.003e-2137.70Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GI1L1_ARATH2.730e-1935.33Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
GI1L3_ARATH9.711e-1734.78Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-102-013-E03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666065 ID=EY666065; Name=EY666065; organism=Citrus sinensis; type=EST; length=793bp
CCATAATTACCTCAACGACTTGGTCTCTGAAGCTAACATCATCGCAGTCT
CGGTCGACTACCGAAGAGCCCCAGAGCATCCCCTTCCTATCGCTTATGAA
GATTCATGGGACGCAGTCAAATGGGTTGCTTCCCATGTTGACGGAAGTGG
CCCCGAAGATTGGCTCAACCGTAATGCTGATTTTGAGCAAGTGTTTTACT
CTGGGGACAGCGCTGGTGCTAATATTGCTCATCACATGGCAATAAGAAAC
GGTGGAGAAATCATCGACGGCTTTAATGTTGTTGGTATTGTCTTGATTCA
TCCATACTTTTGGGGTGTTGAACCTGTTGGTTCCGAGCCTACTGATGTTA
AAATAAGAGCTGGAACGGAGAGATTTTGGCGATTTACTTGTCCAAGCACA
AGCGGGCTCGATGATCCGTGGGTTAATCCGTGTGCTGACGGTTCGAGCCT
CGCGAGCCTGGGGTGCGCCAGGGTGCTGGTGTTTGCTGCGGAGAAGGATT
TCCTGTGCCCTAGAGGATGGTTTTACTATGAGAAGTTGAAGGAAAGTGGG
TGGGGAGGCCATGTAGAGATAGTTGAGTCTAAAGGAGAGCAACATGTGTT
CCATTTGATCAATCCCACTTGTGAAAATGCTGGGGCTATGCTCAAGAAAA
TTGGTTCTTCCTTCATCAGGATAAGCCTTGAAACTGAAGAGTATTTTGCT
TTGGTTCGGAAATATTTTGGGAGGGAAGATGAAAAAGGGAATTATAAACC
CACTGGGGGGGGGGGATTTTACTTCCCTTTTTTTTTTTCTTTT
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