CK940044

Overview
NameCK940044
Unique NameCK940044
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK940044 vs. ExPASy Swiss-Prot
Match: YIPF1_DICDI (Protein YIPF1 homolog OS=Dictyostelium discoideum GN=yipf1 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.239e-31
Identity = 69/213 (32.39%), Postives = 117/213 (54.93%), Query Frame = 2
Query:  239 SDTRGKISGVSGPPSDVDDTFSKPASGSSDEAQSSGWFRAFTVAAYKPYFDVDTSDVLERIKDSLFPFRDTFTEKTSDNPDLYGPFWICSTLIFVAASIGTFVTYISHKVNNKDWNYDINLVPWSAGLFYGYVTIVPLCLYIILKYFSAPSGLVQLFCLYGYSLFVFIPALCLSVVPLEIFRWVIAGVAGFMSATFVALNLRAHIKSAGRKVG 877
            ++   KI G S      ++ FS     +++E  +   +  + V  Y+  F+VDT +V  R+  S+ P + +F     +NPDLYGPFW+ ++L+F+ A       Y  H  ++K W  DI  + +SA   YGY  ++PL L+ I K+ +    L+ + C+YGY+LF+F+PA  L V+PL++ +W+I  +A  +S  F+  N+   +K    K G
Sbjct:   91 NNNSNKIGGNSS-----NNKFSDNVPLNTNEDGTEKKYSFYEVPYYRFLFNVDTKEVGLRLIRSMLPIKFSFFNLIRENPDLYGPFWVLTSLVFIVAVTSNLNEYF-HSSDHKSWEVDIQKIVYSAITIYGYSFVIPLILWGIFKWMNLGLRLLDMLCIYGYTLFIFVPASILCVIPLQLVQWIIVAIASIVSGLFLVTNIFTPLKEDFTKRG 297          
BLAST of CK940044 vs. ExPASy Swiss-Prot
Match: YIPF1_RAT (Protein YIPF1 OS=Rattus norvegicus GN=Yipf1 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.539e-24
Identity = 61/182 (33.52%), Postives = 100/182 (54.95%), Query Frame = 2
Query:  359 FTVAAYKPYFDVDTSDVLERIKDSLFPF--RDTFTEKTSDNPDLYGPFWICSTLIFVAASIGTFVTYISHKVNNKDWNY--DINLVPWSAGLFYGYVTIVPLCLYIILKYFSAPS------GLVQLFCLYGYSLFVFIPALCLSVVPLEIFRWVIAGVAGFMSATFVALNLRAHIKSAGRKV 874
            +T   Y+ +FDVDT  V +RIK SL P   ++        NPDLYGPFWIC+TL+F  A  G    ++ H +  K ++Y  +   V  +A + Y Y  +VPL L+  L + ++          +++ C+YGYSLF++IP   L ++P  + RWV+  +A  +S + +A+     ++   R+V
Sbjct:   77 WTFEYYQTFFDVDTYQVFDRIKGSLLPVPGKNFVRLYIRSNPDLYGPFWICATLVFAIAISGNLSNFLIH-LGEKTYHYVPEFQKVSIAATVIYAYAWLVPLALWGFLLWRNSKVMNIVSYSFLEIVCVYGYSLFIYIPTAVLWIIPQRVIRWVLVTIALGISGSVLAMTFWPAVREDNRRV 257          
BLAST of CK940044 vs. ExPASy Swiss-Prot
Match: YIPF1_MOUSE (Protein YIPF1 OS=Mus musculus GN=Yipf1 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.316e-24
Identity = 70/216 (32.41%), Postives = 113/216 (52.31%), Query Frame = 2
Query:  275 PPSDVDDTFSKPASGSSDEAQS---SGWFRA---FTVAAYKPYFDVDTSDVLERIKDSLFPF--RDTFTEKTSDNPDLYGPFWICSTLIFVAASIGTFVTYISHKVNNKDWNY--DINLVPWSAGLFYGYVTIVPLCLYIIL-----KYFSAPS-GLVQLFCLYGYSLFVFIPALCLSVVPLEIFRWVIAGVAGFMSATFVALNLRAHIKSAGRKV 874
            PP  V     +   G++D  ++   +G  R+   +T   Y+ +FDVDT  V +RIK SL P   ++        NPDLYGPFWIC+TL+F  A  G    ++ H +  K ++Y  +   V  +A + Y Y  +VPL L+  L     K  S  S   +++ C+YGYSLF++IP   L ++P  + RWV+  +A  +S + + +     ++   R+V
Sbjct:   43 PPGSVGREEDEELLGNNDSDETELLAGQKRSSPFWTFEYYQTFFDVDTYQVFDRIKGSLLPVPGKNFVRLYIRSNPDLYGPFWICATLVFAIAISGNLSNFLIH-LGEKTYHYVPEFQKVSIAATVIYAYAWLVPLALWGFLLWRNSKVMSMVSYSFLEIVCVYGYSLFIYIPTAVLWIIPQRVVRWVLVMIALGVSGSVLVMTFWPAVREDNRRV 257          
BLAST of CK940044 vs. ExPASy Swiss-Prot
Match: YIPF1_HUMAN (Protein YIPF1 OS=Homo sapiens GN=YIPF1 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.331e-24
Identity = 60/182 (32.97%), Postives = 100/182 (54.95%), Query Frame = 2
Query:  359 FTVAAYKPYFDVDTSDVLERIKDSLFPF--RDTFTEKTSDNPDLYGPFWICSTLIFVAASIGTFVTYISHKVNNKDWNY--DINLVPWSAGLFYGYVTIVPLCLYIILKYFSAPS------GLVQLFCLYGYSLFVFIPALCLSVVPLEIFRWVIAGVAGFMSATFVALNLRAHIKSAGRKV 874
            +T   Y+ +FDVDT  V +RIK SL P   ++        NPDLYGPFWIC+TL+F  A  G    ++ H +  K ++Y  +   V  +A + Y Y  +VPL L+  L + ++          +++ C+YGYSLF++IP   L ++P +  RW++  +A  +S + +A+     ++   R+V
Sbjct:   77 WTFEYYQTFFDVDTYQVFDRIKGSLLPIPGKNFVRLYIRSNPDLYGPFWICATLVFAIAISGNLSNFLIH-LGEKTYHYVPEFRKVSIAATIIYAYAWLVPLALWGFLMWRNSKVMNIVSYSFLEIVCVYGYSLFIYIPTAILWIIPQKAVRWILVMIALGISGSLLAMTFWPAVREDNRRV 257          
BLAST of CK940044 vs. ExPASy Swiss-Prot
Match: YIPF1_PONAB (Protein YIPF1 OS=Pongo abelii GN=YIPF1 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.646e-23
Identity = 60/182 (32.97%), Postives = 98/182 (53.85%), Query Frame = 2
Query:  359 FTVAAYKPYFDVDTSDVLERIKDSLFPF--RDTFTEKTSDNPDLYGPFWICSTLIFVAASIGTFVTYISHKVNNKDWNY--DINLVPWSAGLFYGYVTIVPLCLYIILKYFSAPS------GLVQLFCLYGYSLFVFIPALCLSVVPLEIFRWVIAGVAGFMSATFVALNLRAHIKSAGRKV 874
            +T   Y+ +FDVDT  V +RIK SL P   ++        NPDLYGPFWIC+TL+F  A  G    ++ H +  K + Y  +   V  +A   Y Y  +VPL L+  L + ++          +++ C+YGYSLF++IP   L ++P +  RW++  +A  +S + +A+     ++   R+V
Sbjct:   77 WTFEYYQTFFDVDTYQVFDRIKGSLLPIPGKNFVRLYIRSNPDLYGPFWICATLVFAIAISGNLSNFLIH-LGEKTYRYVPEFRKVSIAATTIYAYAWLVPLALWGFLMWRNSKVMNIVSYSFLEIVCVYGYSLFIYIPTAILWIIPQKAVRWILVMIALGISGSVLAMTFWPAVREDNRRV 257          
BLAST of CK940044 vs. ExPASy Swiss-Prot
Match: YIPF2_HUMAN (Protein YIPF2 OS=Homo sapiens GN=YIPF2 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.053e-22
Identity = 68/213 (31.92%), Postives = 106/213 (49.77%), Query Frame = 2
Query:  263 GVSGPPSDVDDTFSKPASGSSDEAQSSGWFRAFTVAAYKPYFDVDTSDVLERIKDSLFPF--RDTFTEKTSDNPDLYGPFWICSTLIFVAASIGTFVTYISHKVNNK-DWNYDINLVPWSAGLFYGYVTIVPLCLYIILKYFSA------PSGLVQLFCLYGYSLFVFIPALCLSVVPLEIFRWVIAGVAGFMSATFVALNLRAHIKSAGRKV 874
            G  G   +V++   K A     + Q    F  +T + Y+ +FDVDTS VL+RIK SL P    +       + PDLYGPFWIC+TL FV A  G     ++ + +    ++   + V  +    Y Y  +VPL L+  L++         P   ++  C+YGYSLFVFIP + L ++P+   +W+   +A  +SA  +   L   ++   R V
Sbjct:   48 GSYGAEDEVEEESDKAALLQEQQQQQQPGF--WTFSYYQSFFDVDTSQVLDRIKGSLLPRPGHNFVRHHLRNRPDLYGPFWICATLAFVLAVTGNLTLVLAQRRDPSIHYSPQFHKVTVAGISIYCYAWLVPLALWGFLRWRKGVQERMGPYTFLETVCIYGYSLFVFIPMVVLWLIPVPWLQWLFGALALGLSAAGLVFTLWPVVREDTRLV 258          
BLAST of CK940044 vs. ExPASy Swiss-Prot
Match: YIPF2_RAT (Protein YIPF2 OS=Rattus norvegicus GN=Yipf2 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.627e-21
Identity = 62/183 (33.88%), Postives = 96/183 (52.46%), Query Frame = 2
Query:  353 RAFTVAAYKPYFDVDTSDVLERIKDSLFPF--RDTFTEKTSDNPDLYGPFWICSTLIFVAASIGTFVTYISHKVNNK-DWNYDINLVPWSAGLFYGYVTIVPLCLYIILKYFSAPSGLVQLF------CLYGYSLFVFIPALCLSVVPLEIFRWVIAGVAGFMSATFVALNLRAHIKSAGRKV 874
            R +T   Y+ +FDVDTS VL+RIK SL P    +       + PDLYGPFWIC+TL FV A  G     ++ + +    ++   + V  +    Y Y  +VPL L+  L++       + L+      C+YGYSLFVFIP + L ++P++  +W+   +A  +SA  +   L   ++   R V
Sbjct:   72 RFWTFDYYQSFFDVDTSQVLDRIKGSLLPHPGHNFVRHHLRNRPDLYGPFWICATLAFVLAVTGNLTLVLAQRRDPSIHYSPQFHKVTIAGITIYCYAWLVPLALWGFLRWRQGTRERMGLYTFLETVCVYGYSLFVFIPTVVLWLIPVQWLQWLFGALALALSAAGLVFTLWPVVREDTRLV 254          
BLAST of CK940044 vs. ExPASy Swiss-Prot
Match: YIPF2_MOUSE (Protein YIPF2 OS=Mus musculus GN=Yipf2 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.644e-21
Identity = 61/183 (33.33%), Postives = 95/183 (51.91%), Query Frame = 2
Query:  353 RAFTVAAYKPYFDVDTSDVLERIKDSLFPF--RDTFTEKTSDNPDLYGPFWICSTLIFVAASIGTFVTYISHKVNNK-DWNYDINLVPWSAGLFYGYVTIVPLCLYIILKYFSAPSGLVQLF------CLYGYSLFVFIPALCLSVVPLEIFRWVIAGVAGFMSATFVALNLRAHIKSAGRKV 874
            R +T   Y+ +FDVDTS VL+RIK SL P    +       + PDLYGPFWIC+TL FV A  G     ++ + +    ++   + V  +    Y Y  +VPL L+  L++       + L+      C+YGYSLFVFIP + L ++P++  +W+   +   +SA  +   L   ++   R V
Sbjct:   73 RFWTFDYYQSFFDVDTSQVLDRIKGSLLPHPGHNFVRHHLRNRPDLYGPFWICATLAFVLAVTGNLTLVLAQRRDPSIHYSPQFHKVTIAGITIYCYAWLVPLALWGFLRWRQGTRERMGLYTFLETVCVYGYSLFVFIPTVVLWLIPVQWIQWLFGALGLALSAAGLVFTLWPVVREDTRLV 255          
BLAST of CK940044 vs. ExPASy Swiss-Prot
Match: YIP5_SCHPO (Protein YIP5 OS=Schizosaccharomyces pombe GN=yip5 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.697e-17
Identity = 53/170 (31.18%), Postives = 84/170 (49.41%), Query Frame = 2
Query:  377 KPYFDVDTSDVLERIKDSLFPFRDTFTEKTSDNPDLYGPFWICSTLIFVAASIGTFVTYISHKVNNKDWNYDINLVPWSAGLFYGYVTIVPLCLYIILKYFSAPSGLVQLFCLYGYSLFVFIPAL-------CLSVVPLEIFRWVIAGVAGFMSATFVALNLRAHIKSAG 865
            K  F+V+T DV++R   +L P  + F +   D PDLYGPFWI +T+I       +   Y  +   +    Y I  +  +A + YGY TI+ + L+ IL +      L+   CLYGY+  V++P          LS +   I ++V+ G+   +S  F+  NL    + AG
Sbjct:   53 KDSFNVETKDVVQRCIHTLIPTVNFF-DVVDDRPDLYGPFWITTTVIQALFFSNSITEYARYATGHGTSGYSIKKLISAASIIYGYTTIIAVLLWGILVWNKCNPKLLDCLCLYGYANIVWLPVSLATPPFGLLSTLASHIVKYVLTGIGLLISIVFLTRNLYPICQQAG 221          
The following BLAST results are available for this feature:
BLAST of CK940044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
YIPF1_DICDI6.239e-3132.39Protein YIPF1 homolog OS=Dictyostelium discoideum ... [more]
YIPF1_RAT2.539e-2433.52Protein YIPF1 OS=Rattus norvegicus GN=Yipf1 PE=2 S... [more]
YIPF1_MOUSE3.316e-2432.41Protein YIPF1 OS=Mus musculus GN=Yipf1 PE=2 SV=1[more]
YIPF1_HUMAN4.331e-2432.97Protein YIPF1 OS=Homo sapiens GN=YIPF1 PE=2 SV=1[more]
YIPF1_PONAB1.646e-2332.97Protein YIPF1 OS=Pongo abelii GN=YIPF1 PE=2 SV=1[more]
YIPF2_HUMAN4.053e-2231.92Protein YIPF2 OS=Homo sapiens GN=YIPF2 PE=2 SV=1[more]
YIPF2_RAT2.627e-2133.88Protein YIPF2 OS=Rattus norvegicus GN=Yipf2 PE=2 S... [more]
YIPF2_MOUSE7.644e-2133.33Protein YIPF2 OS=Mus musculus GN=Yipf2 PE=2 SV=1[more]
YIP5_SCHPO6.697e-1731.18Protein YIP5 OS=Schizosaccharomyces pombe GN=yip5 ... [more]
back to top
Properties
Property NameValue
Genbank descriptionCGF1004742_B06 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IIF_B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK940044 ID=CK940044; Name=CK940044; organism=Citrus sinensis; type=EST; length=879bp
GCGGGAGACCGAGAANNNAAGAAGGAGAGAGATAGATCTACTTGAGCAGA
GAACAGAAACGACGCCGAAGAAGAGGACGAAGAAGTAGAAAGAGGGGGGA
AAAATATTAAAGATGATGTCCGGAGGCAATTACACGAGCATTGATAATCA
GAAGCTCTCCGGATCCGTTCCTGCGGTTCCAGATCCAGGCCAGGTCACCG
TCAAATTCTCAGACTCTAATCTACAGACATTTCCGCCTTCTGATACGCGA
GGGAAGATCTCTGGTGTTTCTGGCCCTCCCAGTGATGTCGATGATACATT
TTCGAAACCTGCCTCTGGTTCTTCTGATGAAGCTCAGTCTAGTGGTTGGT
TTAGGGCATTCACAGTTGCTGCATACAAGCCCTACTTTGATGTTGACACT
TCAGATGTTTTAGAGAGGATTAAGGACTCACTTTTTCCATTCAGAGATAC
CTTTACTGAAAAAACATCCGATAACCCAGATTTGTATGGACCATTTTGGA
TATGCTCTACCCTTATATTTGTGGCCGCTTCTATTGGCACTTTCGTGACA
TACATATCACACAAGGTGAACAACAAAGATTGGAACTATGACATAAATCT
GGTGCCTTGGTCTGCTGGCTTGTTCTATGGTTATGTCACAATTGTTCCTC
TTTGTCTGTATATCATCCTTAAATACTTTTCAGCACCGTCCGGCCTCGTT
CAGCTATTTTGTCTTTATGGCTATTCCCTATTTGTCTTTATTCCAGCACT
GTGTCTCTCTGTTGTGCCCTTGGAGATTTTTAGATGGGTAATCGCAGGTG
TGGCTGGGTTTATGTCAGCAACCTTTGTGGCGCTTAACCTTCGAGCCCAC
ATTAAATCTGCTGGGAGAAAGGTGGGTTC
back to top