CK940039

Overview
NameCK940039
Unique NameCK940039
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: RGP1_ORYSJ (Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2)

HSP 1 Score: 327.02 bits (837), Expect = 8.419e-89
Identity = 171/219 (78.08%), Postives = 184/219 (84.02%), Query Frame = 1
Query:  199 GNYNNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTANDXXXXXXXXXXXKATNIVVPGQEPESGRRSYYCCTS 855
            G    KIDYVFK+VLIGDSAVGKSQLLARFAR+EF+LDSKATIGVEFQT+TL I  + VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFD+VARWLEELRGHADKNI+IML+GNKSDL TLR VPTEDAKEFAE+E L FMETSALESTNVE AF+TVLTEIYRIVSKK L AN+           K T IVVPGQEP    ++  CC S
Sbjct:    9 GEVGQKIDYVFKVVLIGDSAVGKSQLLARFARNEFNLDSKATIGVEFQTRTLHIDARTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFMTVLTEIYRIVSKKNLVANEEVDSSGNSSLLKGTKIVVPGQEPAPPTKA-SCCMS 226          
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: RB11A_LOTJA (Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 6.904e-83
Identity = 158/220 (71.82%), Postives = 178/220 (80.91%), Query Frame = 1
Query:  199 GNYNNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTANDXXXXXXXXXXXKATNIVVPGQEPESGRRSYYCCTSS 858
            G+ N KIDYVFK+VLIGDSAVGKSQ+LARFAR+EFSLDSK+TIGVEFQT+TLVI HK VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQ+FD++ RWLEELR HADKNI+I+L+GNK DL   R VPTEDAKEFAEKEGL F+ETSALE+TNVE AF TVLTEIY IV+KK+L A D               I++PG   E   +   CC +S
Sbjct:    8 GDANAKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILIGNKCDLVNQRDVPTEDAKEFAEKEGLFFLETSALEATNVESAFTTVLTEIYNIVNKKSLAA-DESQGNGNSASLSGQKIIIPGPAQEIPAKRNMCCQAS 226          
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: RB11D_TOBAC (Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 2.900e-81
Identity = 149/184 (80.98%), Postives = 171/184 (92.93%), Query Frame = 1
Query:  199 GNYNNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTAND 750
            G+ + KIDYVFK+VLIGDSAVGKSQ+LARFAR+EFSLDSKATIGVEFQT+TL I HK+VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQ+FD++ RWLEELR HAD+NI+IML+GNK+DLE  RAVPTEDAKEFA+KEGL F+ETSA+E+TN+E AFLTVLTEI+ IV+KK L A+D
Sbjct:    6 GDASQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLAIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLIGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATNLEDAFLTVLTEIFNIVNKKNLAADD 189          
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: RB11C_TOBAC (Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 2.455e-80
Identity = 156/220 (70.91%), Postives = 183/220 (83.18%), Query Frame = 1
Query:  199 GNYNNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTANDXXXXXXXXXXXKATNIVVPGQ-EPESGRRSYYCCTS 855
            G+ + KIDYVFK+VLIGDSAVGK+Q+LARFAR+EFSLDSKATIGVEFQT+TLVI HK+VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQ+FD++ RWLEELR HAD+NI+IML GNK+DLE  RAVPTEDAKEFA+KEGL F+ETSA+E+T +E AFLTVLTEI+ IV+KK L A D               I+VPG  +   G+++  CC+S
Sbjct:    6 GDASQKIDYVFKVVLIGDSAVGKTQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLTGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATKLEDAFLTVLTEIFNIVNKKNLAA-DENQSNSNPASLTGKKILVPGPGQVIPGKKA--CCSS 222          
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: RAA2C_ARATH (Ras-related protein RABA2c OS=Arabidopsis thaliana GN=RABA2C PE=2 SV=4)

HSP 1 Score: 265.388 bits (677), Expect = 3.008e-70
Identity = 137/222 (61.71%), Postives = 163/222 (73.42%), Query Frame = 1
Query:  208 NNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTANDXXXXXXXXXXXKATNIVVPGQ------EPESGRRSYYCCTS 855
            + + DY+FKIVLIGDS VGKS +L+RF R+EF L+SK+TIGVEF T+T  +  K +KAQIWDTAGQERYRA+TSAYYRGAVGA+LVYDITKRQ+FDNV RWL ELR HAD NI+IM+ GNKSDL  LR+V  ED +  AEKEGL F+ETSALE+TNVE AF T+L EIY I+SKKAL A +            A N  +PGQ      +  SG     CC+S
Sbjct:    6 DQEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTTQVEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQSLAEKEGLSFLETSALEATNVEKAFQTILGEIYHIISKKALAAQE----------AAAANSAIPGQGTTINVDDTSGGAKRACCSS 217          
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 5.132e-70
Identity = 133/216 (61.57%), Postives = 167/216 (77.31%), Query Frame = 1
Query:  208 NNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTANDXXXXXXXXXXXKATNIVVPGQEPESGRRSYYCCTS 855
            +++ DY+FK+VLIGDS VGKS LL+RF ++EF+L+SK+TIGVEF TKTL +  K VKAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD+T+R +F+N ARWL+ELR H D NI++ML+GNKSDL  L AVPTED K FAE+E L FMETSALE+TNVE AF  VLT+IYRIVSK+A+ A D           +  N+    +E  S  + + CC++
Sbjct:    7 DDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYRIVSKRAVEAGDSGSSSGLPSKGQTINV----KEDSSVLKRFGCCST 218          
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 8.753e-70
Identity = 129/181 (71.27%), Postives = 153/181 (84.53%), Query Frame = 1
Query:  208 NNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTAND 750
            +++ DY+FKIVLIGDS VGKS +L+RF R+EF L+SK+TIGVEF T+TL +  K VKAQIWDTAGQERYRA+TSAYYRGAVGA+LVYDITKRQ+FDNV RWL ELR HAD NI+IM+ GNKSDL+ LRAV  ED +  AEKEGL F+ETSALE+ N+E AF T+LTEIY I+SKKAL A +
Sbjct:    6 DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLKHLRAVSEEDGQALAEKEGLSFLETSALEAVNIEKAFQTILTEIYHIISKKALAAQE 186          
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 1.493e-69
Identity = 134/216 (62.04%), Postives = 160/216 (74.07%), Query Frame = 1
Query:  208 NNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTANDXXXXXXXXXXXKATNIVVPGQEPESGRRSYYCCTS 855
            +++ DY+FKIVLIGDS VGKS +L+RF R+EF L+SK+TIGVEF T+TL +  K VKAQIWDTAGQERYRA+TSAYYRGAVGA+LVYDITKRQ+FDNV RWL ELR HAD NI+IM+ GNKSDL  LRAV  +D    +EKEGL F+ETSALE+TN+E AF T+LTEIY IVSKKAL A +              N+        SG     CC++
Sbjct:    6 DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSEDDGGALSEKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKKALAAQEATAGASVPGQGTTINVA-----DTSGNTKKGCCST 216          
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: RB11A_CHICK (Ras-related protein Rab-11A OS=Gallus gallus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 2.547e-69
Identity = 126/181 (69.61%), Postives = 157/181 (86.74%), Query Frame = 1
Query:  199 GNYNNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALT 741
            GN +++ DY+FK+VLIGDS VGKS LL+RF R+EF+L+SK+TIGVEF T+++ +  K +KAQIWDTAGQERYRA+TSAYYRGAVGA+LVYDI K  +++NV RWL+ELR HAD NI+IMLVGNKSDL  LRAVPT++A+ FAEK GL F+ETSAL+STNVE AF T+LTEIYRIVS+K ++
Sbjct:    2 GNRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMS 182          
BLAST of CK940039 vs. ExPASy Swiss-Prot
Match: RB11A_RAT (Ras-related protein Rab-11A OS=Rattus norvegicus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 259.996 bits (663), Expect = 1.264e-68
Identity = 125/181 (69.06%), Postives = 156/181 (86.19%), Query Frame = 1
Query:  199 GNYNNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALT 741
            G  +++ DY+FK+VLIGDS VGKS LL+RF R+EF+L+SK+TIGVEF T+++ +  K +KAQIWDTAGQERYRA+TSAYYRGAVGA+LVYDI K  +++NV RWL+ELR HAD NI+IMLVGNKSDL  LRAVPT++A+ FAEK GL F+ETSAL+STNVE AF T+LTEIYRIVS+K ++
Sbjct:    2 GTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMS 182          
The following BLAST results are available for this feature:
BLAST of CK940039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RGP1_ORYSJ8.419e-8978.08Ras-related protein RGP1 OS=Oryza sativa subsp. ja... [more]
RB11A_LOTJA6.904e-8371.82Ras-related protein Rab11A OS=Lotus japonicus GN=R... [more]
RB11D_TOBAC2.900e-8180.98Ras-related protein Rab11D OS=Nicotiana tabacum GN... [more]
RB11C_TOBAC2.455e-8070.91Ras-related protein Rab11C OS=Nicotiana tabacum GN... [more]
RAA2C_ARATH3.008e-7061.71Ras-related protein RABA2c OS=Arabidopsis thaliana... [more]
RB11D_LOTJA5.132e-7061.57Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]
RB2BV_BETVU8.753e-7071.27Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]
RB11C_LOTJA1.493e-6962.04Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]
RB11A_CHICK2.547e-6969.61Ras-related protein Rab-11A OS=Gallus gallus GN=RA... [more]
RB11A_RAT1.264e-6869.06Ras-related protein Rab-11A OS=Rattus norvegicus G... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004742_C12 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IIF_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK940039 ID=CK940039; Name=CK940039; organism=Citrus sinensis; type=EST; length=867bp
GGGGATCTTTTATGCTTTTTTCCTACAAAGCACAAACCCATCTCAGATTT
TTCAATAATATTAACAAAATCTTTCCTTTTCGGATTGATTCAACTCAAAA
ACGTAACTTTGATCCGAAGGTTTCATCTTTTCTATTGGGTCGCATAGTCT
CTTACGAAACGTATCGAATAGAAAATTAAGATGTCGAACTTTCAGCAAGG
TAACTATAATAATAAAATCGATTATGTATTCAAAATAGTATTGATTGGAG
ACTCTGCAGTGGGCAAGTCTCAGCTTTTGGCTCGTTTTGCAAGAGATGAA
TTCAGTTTAGATTCAAAGGCCACGATCGGTGTTGAGTTTCAAACAAAGAC
ACTTGTTATTCATCACAAAAATGTCAAAGCTCAGATTTGGGACACTGCCG
GTCAAGAAAGGTATCGGGCTGTAACAAGTGCATACTACAGAGGTGCAGTG
GGGGCGATGCTGGTCTATGACATAACTAAGCGTCAGTCATTTGATAATGT
GGCGAGGTGGTTAGAGGAACTGCGGGGACATGCAGATAAAAATATTATCA
TCATGCTTGTGGGCAACAAGTCTGACCTGGAGACCCTGCGAGCTGTACCC
ACTGAGGATGCGAAAGAGTTTGCTGAAAAGGAAGGCCTCTGCTTCATGGA
GACATCAGCTCTTGAGTCCACTAATGTTGAGCTTGCTTTCCTCACAGTCT
TGACAGAGATTTATCGAATTGTCAGCAAAAAGGCTCTCACTGCCAATGAT
GAATCAGAATCTGGTGGGAGTTCTTCGCTTCTTAAGGCTACCAATATTGT
TGTCCCTGGGCAGGAACCAGAGTCTGGGCGAAGGAGTTACTACTGTTGCA
CATCATCGTAGGNNNNN
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