CK940031

Overview
NameCK940031
Unique NameCK940031
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length900
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK940031 vs. ExPASy Swiss-Prot
Match: SERC3_PONAB (Serine incorporator 3 OS=Pongo abelii GN=SERINC3 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.919e-23
Identity = 74/251 (29.48%), Postives = 122/251 (48.61%), Query Frame = 2
Query:  206 RIAYCGLFALSLIVSWIL-REVAAPLMEKLPWINH----FHKTPSREWFETD------AVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLP-NEIVSFYESISKFGSGXXXXXXXXXXXXXXHRWNDTWVGYDEQ----FWYVALLVVSLVCYVLTFGFSGLLFHWFT-PSGQDCGLNTFFIVMTLILAFIFAVVALHPAV-----GGSILPASVISLYCMYLCYXGL 892
            R+ Y  +  LS +VS+I+ R+     ++K+P         H+       + D      AV R+S    +FF + S+LM  VK  KDPR ++H+G W  KI     +++  F++P     S +  +   G+               H WN++WV   E+     WY ALL  +   Y+L+    GLL+ ++T P G  C  N FFI + LIL  + +++++HP +        +L +SVI+LY MYL +  +
Sbjct:   39 RLIYAFILLLSTVVSYIMQRKEMETYLKKIPGFCEGGFKIHEADINADKDCDVLVGYKAVYRISFAMAIFFFVFSLLMFKVKTSKDPRAAVHNGFWFFKIAALIGIMVGSFYIPGGYFSSVWFVVGMIGAALFILIQLVLLVDFAHSWNESWVNRMEEGNPRLWYAALLSFTSAFYILSIICVGLLYTYYTKPDG--CTENKFFISINLILCVVASIISIHPKIQEHQPRSGLLQSSVITLYTMYLTWSAM 287          
BLAST of CK940031 vs. ExPASy Swiss-Prot
Match: SERC3_BOVIN (Serine incorporator 3 OS=Bos taurus GN=SERINC3 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.492e-23
Identity = 64/193 (33.16%), Postives = 102/193 (52.85%), Query Frame = 2
Query:  347 AVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLP-NEIVSFYESISKFGSGXXXXXXXXXXXXXXHRWNDTWVGYDEQ----FWYVALLVVSLVCYVLTFGFSGLLFHWFT-PSGQDCGLNTFFIVMTLILAFIFAVVALHPAV-----GGSILPASVISLYCMYLCYXGL 892
            AV R+S    +FF   S+LM+ VK  KDPR ++H+G W  KI     +++  F++P     + +  I   G+               H WN++WV   E+     WY ALL V+ + Y+L+  F+GLL+ ++T P G  C  N FFI   LIL  + +V+++HP +        +L +S+I+LY MYL +  +
Sbjct:   96 AVYRISFALAVFFFAFSLLMLNVKTSKDPRAAIHNGFWFFKIAAIVGVMVGSFYIPGGHFNTAWFVIGMVGAAFFILIQLVLLVDFAHSWNESWVNRMEEGNPKCWYAALLSVTSLFYILSIIFAGLLYTYYTKPDG--CTENKFFISFNLILCVVISVLSIHPKIQEHQPRSGLLQSSLITLYTMYLTWSAM 286          
BLAST of CK940031 vs. ExPASy Swiss-Prot
Match: SERC3_HUMAN (Serine incorporator 3 OS=Homo sapiens GN=SERINC3 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 9.389e-22
Identity = 72/251 (28.69%), Postives = 121/251 (48.21%), Query Frame = 2
Query:  206 RIAYCGLFALSLIVSWIL-REVAAPLMEKLPWINH----FHKTPSREWFETD------AVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLP-NEIVSFYESISKFGSGXXXXXXXXXXXXXXHRWNDTWVGYDEQ----FWYVALLVVSLVCYVLTFGFSGLLFHWFT-PSGQDCGLNTFFIVMTLILAFIFAVVALHPAV-----GGSILPASVISLYCMYLCYXGL 892
            R+ Y  +  LS +VS+I+ R+     ++K+P         H+       + D      AV R+S    +FF + S+LM  VK  KD R ++H+G W  KI     +++  F++P     S +  +   G+               H WN++WV   E+     WY ALL  +   Y+L+    GLL+ ++T P G  C  N FFI + LIL  + +++++HP +        +L +S+I+LY MYL +  +
Sbjct:   39 RLIYAFILLLSTVVSYIMQRKEMETYLKKIPGFCEGGFKIHEADINADKDCDVLVGYKAVYRISFAMAIFFFVFSLLMFKVKTSKDLRAAVHNGFWFFKIAALIGIMVGSFYIPGGYFSSVWFVVGMIGAALFILIQLVLLVDFAHSWNESWVNRMEEGNPRLWYAALLSFTSAFYILSIICVGLLYTYYTKPDG--CTENKFFISINLILCVVASIISIHPKIQEHQPRSGLLQSSLITLYTMYLTWSAM 287          
BLAST of CK940031 vs. ExPASy Swiss-Prot
Match: SERIC_MONBE (Probable serine incorporator OS=Monosiga brevicollis GN=serinc PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.557e-19
Identity = 75/259 (28.96%), Postives = 118/259 (45.56%), Query Frame = 2
Query:  200 SARIAYCGLFALSLIVSWIL--REVAAPLMEKLPWINHFHKTPSR----------------EWFETDAVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLPNE--IVSFYESISKFGSGXXXXXXXXXXXXXXHRWNDTWVGYDEQ------FWYVALLVVSLVCYVLTFGFSGLLFHWFTPSGQDCGLNTFFIVMTLILAFIFAVVALHPAV-----GGSILPASVISLYCMYLCY 883
            S RI Y  LF LS I +WI+  ++V+  LM+    +  +H T  R                 W E   V+R+     LF   LS+  +GV + KDPR SLH+G W +K+I     ++  FF+ N   I + +  I   G+               + WND+WVG  E+      F    L+  +++        + L+FH++T    DC L+ FFI   L LA +  + ++ P+V        IL +SV++ Y  YL +
Sbjct:   43 STRITYAILFFLSSIAAWIMLDKDVSKGLMK----VCCYHSTLFRLVLFTQPAIKTTTNVVPWGEL-GVMRIMFSVCLFHLFLSLCTIGVSSSKDPRSSLHNGMWFIKLILLVGAMVGSFFISNSFFIGASWSWIGLVGAVLFMIVQFILLVDFAYSWNDSWVGKLEEGSKCAGFGSYRLISATVMLMAFVITLTVLMFHFYT--NGDCKLSNFFIGFNLALALLVTLTSMLPSVREALPSSGILQSSVVAAYATYLVW 294          
BLAST of CK940031 vs. ExPASy Swiss-Prot
Match: SERIC_NEMVE (Probable serine incorporator OS=Nematostella vectensis GN=serinc PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.339e-19
Identity = 75/246 (30.49%), Postives = 108/246 (43.90%), Query Frame = 2
Query:  200 SARIAYCGLFALSLIVSWILREVAAP----LMEKLPWINHFHKTPSREWFETDAVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLP-NEIVSFYESISKFGSGXXXXXXXXXXXXXXHRWNDTWVGYDEQ----FWYVALLVVSLVCYVLTFGFSGLLFHWFTPSGQ-DCGLNTFFIVMTLILAFIFAVVALHPAV-----GGSILPASVISLYCMYLCYXGL 892
            S RI Y       L+VS I   V AP     + ++P++               AV RV  G   FF +  +LM GV + +D R  + +G W +KI+ +   ++  FF+P  +    +      GS               H WN +WVG  E+     W V LL  + + Y         L+ +FT S +  C  N FFI   LIL  I +V+A+HP V        +L ASVISLY +YL +  L
Sbjct:   41 STRIVYSIFLLFGLVVSCI---VLAPGIRHKLNQIPYLCEHASETCDSIVGYLAVYRVCFGLAAFFLLFCLLMYGVTSSRDVRSKIQNGFWGIKILLFLGAIVAAFFIPQGKFSEVWMYFGLIGSFLFILIQLVLLVDFAHTWNSSWVGRMEESGSKVWAVLLLCATFLMYGFCVAGIVCLYVYFTYSQESSCHTNKFFISFNLILCIIASVLAIHPKVQERLPTSGLLQASVISLYTVYLTWSAL 283          
BLAST of CK940031 vs. ExPASy Swiss-Prot
Match: SERC3_MOUSE (Serine incorporator 3 OS=Mus musculus GN=Serinc3 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 4.822e-18
Identity = 56/192 (29.17%), Postives = 92/192 (47.92%), Query Frame = 2
Query:  347 AVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLP-NEIVSFYESISKFGSGXXXXXXXXXXXXXXHRWNDTWVGYDEQ----FWYVALLVVSLVCYVLTFGFSGLLFHWFTPSGQDCGLNTFFIVMTLILAFIFAVVALHPAV-----GGSILPASVISLYCMYLCYXGL 892
            AV R++    +FF    +LM+ VK  KDPR ++H+G W  KI     ++I  F++P       +      G+               H WN+ WV   E+     WY ALL  + + Y+L+  F+ LL+ ++T    DC  N  FI + LI     ++V++ P V        +L +S+I+LY +YL +  +
Sbjct:   97 AVYRINFAVAIFFFAFFLLMLKVKTSKDPRAAVHNGFWFFKIAAIIGIMIGSFYIPGGSFTEVWFVAGMLGASFFIIIQLVLLVDMAHSWNELWVNRMEEGNPRLWYAALLSFTSLFYILSIVFAALLYVFYT-KPDDCTENKVFISLNLIFCVAVSIVSILPKVQEHQPRSGLLQSSIITLYTLYLTWSAM 287          
BLAST of CK940031 vs. ExPASy Swiss-Prot
Match: SERC1_PONAB (Serine incorporator 1 OS=Pongo abelii GN=SERINC1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.188e-16
Identity = 58/194 (29.90%), Postives = 96/194 (49.48%), Query Frame = 2
Query:  347 AVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLPN---EIVSFYESISKFGSGXXXXXXXXXXXXXXHRWNDTWVGYDEQ----FWYVALLVVSLVCYVLTFGFSGLLFHWFTPSGQDCGLNTFFIVMTLILAFIFAVVALHPAVGGS-----ILPASVISLYCMYLCYXGL 892
            AV R+  G  +F+ +LS+LM+ VK+  DPR ++H+G W  K      ++I  FF+P      V FY  +   G+               H WN++WV   E+     WY ALL  + + Y+L+     L F ++T     C  N  FI + ++L    +V+++ P +  S     +L +SVI++Y MYL +  +
Sbjct:   89 AVYRLCFGLAMFYLLLSLLMIKVKSSSDPRAAVHNGFWFFKFAAAIAIIIGAFFIPEGTFTTVWFY--VGMAGAFCFILIQLVLLIDFAHSWNESWVEKMEEGNSRCWYAALLSATALNYLLSLVAIVLFFVYYTHPA-SCSENKAFISVNMLLCIGASVMSILPKIQESQPRSGLLQSSVITVYTMYLTWSAM 279          
BLAST of CK940031 vs. ExPASy Swiss-Prot
Match: SERC1_BOVIN (Serine incorporator 1 OS=Bos taurus GN=SERINC1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.188e-16
Identity = 57/194 (29.38%), Postives = 96/194 (49.48%), Query Frame = 2
Query:  347 AVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLPN---EIVSFYESISKFGSGXXXXXXXXXXXXXXHRWNDTWVGYDEQ----FWYVALLVVSLVCYVLTFGFSGLLFHWFTPSGQDCGLNTFFIVMTLILAFIFAVVALHPAVGGS-----ILPASVISLYCMYLCYXGL 892
            AV R+  G  +F+ +LS+LM+ VK+  DPR ++H+G W  K      ++I  FF+P      V FY  +   G+               H WN++WV   E+     WY ALL  + + Y+L+     L F ++T     C  N  FI + ++L    +++++ P +  S     +L +SVI++Y MYL +  +
Sbjct:   89 AVYRLCFGLAMFYLLLSLLMIKVKSSSDPRAAIHNGFWFFKFAAAIAIIIGAFFIPEGTFTTVWFY--VGMAGAFCFILIQLVLLIDFAHSWNESWVEKMEEGNSRCWYAALLSATALNYLLSLVAVVLFFVYYTHPA-SCAENKAFISVNMLLCLGASIMSILPKIQESQPRSGLLQSSVITVYTMYLTWSAM 279          
BLAST of CK940031 vs. ExPASy Swiss-Prot
Match: SERC1_RAT (Serine incorporator 1 OS=Rattus norvegicus GN=Serinc1 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.551e-16
Identity = 58/194 (29.90%), Postives = 96/194 (49.48%), Query Frame = 2
Query:  347 AVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLPN---EIVSFYESISKFGSGXXXXXXXXXXXXXXHRWNDTWVGYDEQ----FWYVALLVVSLVCYVLTFGFSGLLFHWFTPSGQDCGLNTFFIVMTLILAFIFAVVALHPAVGGS-----ILPASVISLYCMYLCYXGL 892
            AV R+  G  +F+ +LS+LM+ VK+  DPR ++H+G W  K      ++I  FF+P      V FY  +   G+               H WN++WV   E+     WY ALL  + + Y+L+     L F ++T     C  N  FI + ++L    +V+++ P +  S     +L +SVI++Y MYL +  +
Sbjct:   89 AVYRLCFGLAMFYLLLSLLMIKVKSSSDPRAAVHNGFWFFKFATAVAIIIGAFFIPEGTFTTVWFY--VGMAGAFCFILIQLVLLIDFAHSWNESWVEKMEEGNSRCWYAALLSATALNYLLSLVAIILFFVYYTHPA-SCSENKAFISVNMLLCIGASVMSILPKIQESQPRSGLLQSSVITIYTMYLTWSAM 279          
BLAST of CK940031 vs. ExPASy Swiss-Prot
Match: SERC1_MOUSE (Serine incorporator 1 OS=Mus musculus GN=Serinc1 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.551e-16
Identity = 58/194 (29.90%), Postives = 96/194 (49.48%), Query Frame = 2
Query:  347 AVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLPN---EIVSFYESISKFGSGXXXXXXXXXXXXXXHRWNDTWVGYDEQ----FWYVALLVVSLVCYVLTFGFSGLLFHWFTPSGQDCGLNTFFIVMTLILAFIFAVVALHPAVGGS-----ILPASVISLYCMYLCYXGL 892
            AV R+  G  +F+ +LS+LM+ VK+  DPR ++H+G W  K      ++I  FF+P      V FY  +   G+               H WN++WV   E+     WY ALL  + + Y+L+     L F ++T     C  N  FI + ++L    +V+++ P +  S     +L +SVI++Y MYL +  +
Sbjct:   89 AVYRLCFGLAMFYLLLSLLMIKVKSSSDPRAAVHNGFWFFKFATAVAIIIGAFFIPEGTFTTVWFY--VGMAGAFCFILIQLVLLIDFAHSWNESWVEKMEEGNSRCWYAALLSATALNYLLSLVAVVLFFVYYTHPA-SCAENKAFISVNMLLCIGASVMSILPKIQESQPRSGLLQSSVITVYTMYLTWSAM 279          
The following BLAST results are available for this feature:
BLAST of CK940031 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
SERC3_PONAB2.919e-2329.48Serine incorporator 3 OS=Pongo abelii GN=SERINC3 P... [more]
SERC3_BOVIN8.492e-2333.16Serine incorporator 3 OS=Bos taurus GN=SERINC3 PE=... [more]
SERC3_HUMAN9.389e-2228.69Serine incorporator 3 OS=Homo sapiens GN=SERINC3 P... [more]
SERIC_MONBE2.557e-1928.96Probable serine incorporator OS=Monosiga brevicoll... [more]
SERIC_NEMVE3.339e-1930.49Probable serine incorporator OS=Nematostella vecte... [more]
SERC3_MOUSE4.822e-1829.17Serine incorporator 3 OS=Mus musculus GN=Serinc3 P... [more]
SERC1_PONAB1.188e-1629.90Serine incorporator 1 OS=Pongo abelii GN=SERINC1 P... [more]
SERC1_BOVIN1.188e-1629.38Serine incorporator 1 OS=Bos taurus GN=SERINC1 PE=... [more]
SERC1_RAT1.551e-1629.90Serine incorporator 1 OS=Rattus norvegicus GN=Seri... [more]
SERC1_MOUSE1.551e-1629.90Serine incorporator 1 OS=Mus musculus GN=Serinc1 P... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004742_D12 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IIF_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK940031 ID=CK940031; Name=CK940031; organism=Citrus sinensis; type=EST; length=900bp
GGGGCTCTCCTAATATTCTTCGCTTAGCGCTTGCGATCATCGCCTTTTCT
ATTTCACTTTCCCTTTCTCCTTCAAATTCAATCAAATATCCCAGTTTGTG
AGAGAAGAGAAGATGTGGGCGGCGTCTTGTCTTGCGTCGTGCTGTGCGGC
GTGCGCGTGTGACGCGTGTCGCTCGGCGGTGTCGGGGATCAGCAGGAGGT
CAGCTAGGATTGCTTACTGCGGGCTGTTTGCTCTCTCTCTGATCGTTTCG
TGGATTCTTCGTGAAGTCGCCGCTCCACTCATGGAGAAGCTCCCTTGGAT
TAATCATTTTCATAAGACACCTAGCAGGGAGTGGTTTGAAACTGATGCTG
TTCTGCGAGTTAGCTTGGGAAATTTTCTCTTTTTCACTATTTTGTCAATT
TTAATGGTTGGCGTGAAAAATCAGAAAGATCCCCGTGATAGCTTGCACCA
CGGTGGATGGATGATGAAAATTATTTGTTGGTGCCTTCTGGTGATCTTTA
TGTTTTTCCTTCCAAATGAGATTGTCAGCTTCTATGAGTCAATATCAAAG
TTTGGCTCGGGTTTGTTTCTTCTTGTTCAAGTTGTCCTTTTATTGGACTT
TGTTCACAGATGGAATGACACGTGGGTTGGATATGATGAGCAGTTCTGGT
ATGTTGCCCTATTGGTTGTTTCTCTTGTTTGTTACGTGCTGACATTTGGC
TTCTCGGGACTTCTTTTCCATTGGTTCACACCATCAGGGCAGGATTGTGG
GCTCAATACATTCTTCATTGTTATGACCTTGATTCTTGCATTTATCTTTG
CTGTAGTTGCTCTACATCCCGCTGTGGGTGGCAGCATTTTGCCTGCTTCA
GTAATATCTCTCTACTGCATGTACCTCTGCTACNNNGGACTTTTCAGTGA
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