CK940026

Overview
NameCK940026
Unique NameCK940026
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK940026 vs. ExPASy Swiss-Prot
Match: DYL2_RAT (Dynein light chain 2, cytoplasmic OS=Rattus norvegicus GN=Dynll2 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.471e-31
Identity = 60/88 (68.18%), Postives = 73/88 (82.95%), Query Frame = 1
Query:  226 SGKRVVIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 489
            S ++ VIK+ADM ED+Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct:    2 SDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89          
BLAST of CK940026 vs. ExPASy Swiss-Prot
Match: DYL2_MOUSE (Dynein light chain 2, cytoplasmic OS=Mus musculus GN=Dynll2 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.471e-31
Identity = 60/88 (68.18%), Postives = 73/88 (82.95%), Query Frame = 1
Query:  226 SGKRVVIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 489
            S ++ VIK+ADM ED+Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct:    2 SDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89          
BLAST of CK940026 vs. ExPASy Swiss-Prot
Match: DYL2_HUMAN (Dynein light chain 2, cytoplasmic OS=Homo sapiens GN=DYNLL2 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.471e-31
Identity = 60/88 (68.18%), Postives = 73/88 (82.95%), Query Frame = 1
Query:  226 SGKRVVIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 489
            S ++ VIK+ADM ED+Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct:    2 SDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89          
BLAST of CK940026 vs. ExPASy Swiss-Prot
Match: DYL2_BOVIN (Dynein light chain 2, cytoplasmic OS=Bos taurus GN=DYNLL2 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.471e-31
Identity = 60/88 (68.18%), Postives = 73/88 (82.95%), Query Frame = 1
Query:  226 SGKRVVIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 489
            S ++ VIK+ADM ED+Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct:    2 SDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89          
BLAST of CK940026 vs. ExPASy Swiss-Prot
Match: DYL1_ANTCR (Dynein light chain LC6, flagellar outer arm OS=Anthocidaris crassispina PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.274e-30
Identity = 61/88 (69.32%), Postives = 73/88 (82.95%), Query Frame = 1
Query:  226 SGKRVVIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 489
            S ++ VIK+ADM ED+Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG NFGSYVTHET HF+YFYL Q AVLLFKSG
Sbjct:    2 SERKAVIKNADMPEDMQQDAVDCATQALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 89          
BLAST of CK940026 vs. ExPASy Swiss-Prot
Match: DYL1_DROME (Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster GN=ctp PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.174e-30
Identity = 59/88 (67.05%), Postives = 73/88 (82.95%), Query Frame = 1
Query:  226 SGKRVVIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 489
            S ++ VIK+ADM E++Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct:    2 SDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 89          
BLAST of CK940026 vs. ExPASy Swiss-Prot
Match: DYL2_DROME (Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster GN=Cdlc2 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.839e-30
Identity = 59/88 (67.05%), Postives = 73/88 (82.95%), Query Frame = 1
Query:  226 SGKRVVIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 489
            S ++ VIK+ADM E++Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct:    2 SDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 89          
BLAST of CK940026 vs. ExPASy Swiss-Prot
Match: DYL1_CHLRE (Dynein 8 kDa light chain, flagellar outer arm OS=Chlamydomonas reinhardtii PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.708e-30
Identity = 58/91 (63.74%), Postives = 72/91 (79.12%), Query Frame = 1
Query:  217 VSQSGKRVVIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 489
            ++    + VIK+ADM E++Q +AVD A  A EK ++EKD+A  IKK+FD+KH PTWHCIVG NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct:    1 MASGSSKAVIKNADMSEEMQADAVDCATQALEKYNIEKDIAAYIKKEFDRKHNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 91          
BLAST of CK940026 vs. ExPASy Swiss-Prot
Match: DYL1_CAEEL (Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans GN=dlc-1 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.842e-30
Identity = 57/86 (66.28%), Postives = 72/86 (83.72%), Query Frame = 1
Query:  232 KRVVIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 489
            ++ VIK+ADM +D+Q++A+D A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct:    4 RKAVIKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89          
BLAST of CK940026 vs. ExPASy Swiss-Prot
Match: DYL1_RAT (Dynein light chain 1, cytoplasmic OS=Rattus norvegicus GN=Dynll1 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.840e-29
Identity = 56/86 (65.12%), Postives = 72/86 (83.72%), Query Frame = 1
Query:  232 KRVVIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 489
            ++ VIK+ADM E++Q+++V+ A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct:    4 RKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89          
The following BLAST results are available for this feature:
BLAST of CK940026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
DYL2_RAT7.471e-3168.18Dynein light chain 2, cytoplasmic OS=Rattus norveg... [more]
DYL2_MOUSE7.471e-3168.18Dynein light chain 2, cytoplasmic OS=Mus musculus ... [more]
DYL2_HUMAN7.471e-3168.18Dynein light chain 2, cytoplasmic OS=Homo sapiens ... [more]
DYL2_BOVIN7.471e-3168.18Dynein light chain 2, cytoplasmic OS=Bos taurus GN... [more]
DYL1_ANTCR1.274e-3069.32Dynein light chain LC6, flagellar outer arm OS=Ant... [more]
DYL1_DROME2.174e-3067.05Dynein light chain 1, cytoplasmic OS=Drosophila me... [more]
DYL2_DROME2.839e-3067.05Dynein light chain 2, cytoplasmic OS=Drosophila me... [more]
DYL1_CHLRE3.708e-3063.74Dynein 8 kDa light chain, flagellar outer arm OS=C... [more]
DYL1_CAEEL4.842e-3066.28Dynein light chain 1, cytoplasmic OS=Caenorhabditi... [more]
DYL1_RAT1.840e-2965.12Dynein light chain 1, cytoplasmic OS=Rattus norveg... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004742_D06 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IIF_D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK940026 ID=CK940026; Name=CK940026; organism=Citrus sinensis; type=EST; length=707bp
GGGGATAATTGATAGACTCATAGAGTCATAGAGAGAGACGTCCCTCCTGT
TGCGTATTGCTCAGCTCTTTATTAGCAAAAGCATAAAACAAATAAAAACT
GAAAAAAATTTCATTGAGACAAAACAACAAACACCATGAGTGAAGAAACG
AAGAAGAGCGTCACCGGAGCTCTGGTCGTGAAACCCAACTCCGACGACCG
GAAACCGACTGTGGCAGTGTCCCAATCTGGAAAACGAGTCGTTATTAAGA
GCGCCGACATGAAAGAGGACCTGCAAAAGGAGGCTGTTGATATTGCTATT
GCAGCATTTGAGAAGAACAGTGTAGAGAAAGATGTAGCTGAGAGGATAAA
GAAGGATTTTGATAAGAAGCATGGACCTACTTGGCACTGTATTGTCGGTA
GCAATTTTGGTTCATATGTGACTCACGAAACAAACCACTTTGTTTATTTC
TATTTGGATCAGAAAGCAGTTTTGCTATTCAAATCCGGTTAGCCCAATGT
CGAGAAAGATGGTGGATTGTGGTTCGGATGATGAGTTTACGTTCCAAATG
CTATAAATATTGTCTGTATGTAGTAATTGAAATCTTTACATGGAGATTCT
TGAGCCTAAGTTGTATATTTGAATTCGCTTGGAACTGGTTTGATACTTCA
AAATGGATGTGCACTGCAGTTTTTAGTTAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA
back to top