CK940022

Overview
NameCK940022
Unique NameCK940022
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length394
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK940022 vs. ExPASy Swiss-Prot
Match: PX11A_ARATH (Peroxisomal membrane protein 11A OS=Arabidopsis thaliana GN=PEX11A PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.300e-27
Identity = 50/65 (76.92%), Postives = 57/65 (87.69%), Query Frame = 3
Query:  105 RDFXNHLEAYLAKRDGVDKLLXLSRYATKIILASSVLPETLPLTGRLKSFESSGGLSRKAFRLGE 299
            RDF NHLE YL+KRDGVDKLL +SRYATKIILASS++PET  +  RLKSFESS G+SRKAFRLG+
Sbjct:   15 RDFLNHLETYLSKRDGVDKLLKISRYATKIILASSLIPETRSIIPRLKSFESSVGVSRKAFRLGK 79          

HSP 2 Score: 42.3578 bits (98), Expect = 1.300e-27
Identity = 22/38 (57.89%), Postives = 27/38 (71.05%), Query Frame = 1
Query:  280 KPFDSEKFVQDVNALRNSHLDSLSREDLILSVIAYGGE 393
            K F   KFVQD+NALR+S  D  S  +L+L +IAYGGE
Sbjct:   73 KAFRLGKFVQDINALRSSRWD--SNHELVLLIIAYGGE 108          
BLAST of CK940022 vs. ExPASy Swiss-Prot
Match: PX113_ORYSJ (Peroxisomal membrane protein 11-3 OS=Oryza sativa subsp. japonica GN=PEX11-3 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.537e-17
Identity = 42/65 (64.62%), Postives = 51/65 (78.46%), Query Frame = 3
Query:  105 RDFXNHLEAYLAKRDGVDKLLXLSRYATKIILASSVLPETLPLTGRLKSFESSGGLSRKAFRLGE 299
            RDF  H+EAYL++RDGVDKLL +SRYA ++ LA+  LP     + RLKSFESS GLSRKAFRLG+
Sbjct:   23 RDFLVHVEAYLSRRDGVDKLLKISRYAARLALAAGPLPPA--ASARLKSFESSVGLSRKAFRLGK 85          

HSP 2 Score: 26.1794 bits (56), Expect = 5.537e-17
Identity = 16/38 (42.11%), Postives = 22/38 (57.89%), Query Frame = 1
Query:  280 KPFDSEKFVQDVNALRNSHLDSLSREDLILSVIAYGGE 393
            K F   KFVQ+VNALR     +       ++++AYGGE
Sbjct:   79 KAFRLGKFVQNVNALR-----AHPHPPPAVALLAYGGE 111          
BLAST of CK940022 vs. ExPASy Swiss-Prot
Match: PX113_ORYSI (Peroxisomal membrane protein 11-3 OS=Oryza sativa subsp. indica GN=PEX11-3 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.537e-17
Identity = 42/65 (64.62%), Postives = 51/65 (78.46%), Query Frame = 3
Query:  105 RDFXNHLEAYLAKRDGVDKLLXLSRYATKIILASSVLPETLPLTGRLKSFESSGGLSRKAFRLGE 299
            RDF  H+EAYL++RDGVDKLL +SRYA ++ LA+  LP     + RLKSFESS GLSRKAFRLG+
Sbjct:   23 RDFLVHVEAYLSRRDGVDKLLKISRYAARLALAAGPLPPA--ASARLKSFESSVGLSRKAFRLGK 85          

HSP 2 Score: 26.1794 bits (56), Expect = 5.537e-17
Identity = 16/38 (42.11%), Postives = 22/38 (57.89%), Query Frame = 1
Query:  280 KPFDSEKFVQDVNALRNSHLDSLSREDLILSVIAYGGE 393
            K F   KFVQ+VNALR     +       ++++AYGGE
Sbjct:   79 KAFRLGKFVQNVNALR-----AHPHPPPAVALLAYGGE 111          
BLAST of CK940022 vs. ExPASy Swiss-Prot
Match: PX112_ORYSJ (Peroxisomal membrane protein 11-2 OS=Oryza sativa subsp. japonica GN=PEX11-2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.771e-15
Identity = 39/67 (58.21%), Postives = 48/67 (71.64%), Query Frame = 3
Query:  105 RDFXNHLEAYLAKRDGVDKLLXLSRYATKIILASSVLPETLP--LTGRLKSFESSGGLSRKAFRLGE 299
            RD   H+EAYL++RDGVD LL +S YA ++ LA +     LP   T RL+SFESS GLSRKAFRLG+
Sbjct:   25 RDILVHIEAYLSRRDGVDNLLKVSLYAARLALALAAGQPPLPHAATARLRSFESSVGLSRKAFRLGK 91          

HSP 2 Score: 28.4906 bits (62), Expect = 4.771e-15
Identity = 15/38 (39.47%), Postives = 21/38 (55.26%), Query Frame = 1
Query:  280 KPFDSEKFVQDVNALRNSHLDSLSREDLILSVIAYGGE 393
            K F   KFVQ +NALR +          +L ++AYGG+
Sbjct:   85 KAFRLGKFVQSINALRAAAYHPHPHVHPLLVLLAYGGQ 122          
The following BLAST results are available for this feature:
BLAST of CK940022 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PX11A_ARATH1.300e-2776.92Peroxisomal membrane protein 11A OS=Arabidopsis th... [more]
PX113_ORYSJ5.537e-1764.62Peroxisomal membrane protein 11-3 OS=Oryza sativa ... [more]
PX113_ORYSI5.537e-1764.62Peroxisomal membrane protein 11-3 OS=Oryza sativa ... [more]
PX112_ORYSJ4.771e-1558.21Peroxisomal membrane protein 11-2 OS=Oryza sativa ... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004742_E12 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IIF_E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK940022 ID=CK940022; Name=CK940022; organism=Citrus sinensis; type=EST; length=394bp
GGGAAGAGACCCTTCAAATTAGCAATCGCGATTCCATGGATCCCTCCAAA
GCTTCNNNNGCCCTCGCTCCCTCCAAATCGTCCGGTGATTCGAAGCCCAA
AGATAGAGACTTCNTAAACCATTTAGAAGCATATCTCGCGAAACGAGACG
GCGTTGACAAGCTTCTCNNNCTCTCCAGATACGCGACGAAGATCATCTTA
GCCTCTTCAGTCCTTCCAGAAACTCTTCCCCTAACTGGCCGACTCAAGAG
CTTCGAGTCCAGCGGGGGACTGAGTCGCAAAGCCTTTCGACTCGGAGAAA
TTCGTCCAAGACGTCAACGCTTTGCGGAACTCTCATCTCGATTCCCTTTC
CAGGGAAGATCTTATTCTCTCCGTTATCGCCTACGGAGGTGAAG
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