CK940021

Overview
NameCK940021
Unique NameCK940021
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK940021 vs. ExPASy Swiss-Prot
Match: Y1689_ARATH (Uncharacterized membrane protein At1g06890 OS=Arabidopsis thaliana GN=At1g06890 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.516e-32
Identity = 55/141 (39.01%), Postives = 89/141 (63.12%), Query Frame = 2
Query:  197 LQRKYSLTSFNLLGHTAPAQAATLLVIGPFLDNWLTDKRIYAYDYNISSVIFLILSCTIAVGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMI---WYSNASTKPGGKERRSSLP 610
            +Q+K+ ++S  LL  + P QA TL V GPFLD  LT++ ++A+ Y    V F++LSC I+V  N S F+ IG+ + V++QVLGH+KT LVL  G++   ++  +   +LG+++AV GM+   +Y +  T+    E  + LP
Sbjct:  174 IQKKFKVSSTQLLYQSCPYQAITLFVTGPFLDGLLTNQNVFAFKYTSQVVFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLL-RDPFDWRNILGILVAVIGMVVYSYYCSIETQQKASETSTQLP 313          

HSP 2 Score: 47.7506 bits (112), Expect = 1.516e-32
Identity = 22/55 (40.00%), Postives = 37/55 (67.27%), Query Frame = 3
Query:   12 LLEVVLDKIRYSRDTKLSIAFVLLGVGVCTVTDVSVNARGFIAALIAVWSTSIQQ 176
            LLE +  + ++SR  + S+  +LLGVG+ TVTD+ +N  G + +L+AV +T + Q
Sbjct:  114 LLETLFFRKKFSRKIQFSLTILLLGVGIATVTDLQLNMLGSVLSLLAVVTTCVAQ 168          
BLAST of CK940021 vs. ExPASy Swiss-Prot
Match: S35E3_BOVIN (Solute carrier family 35 member E3 OS=Bos taurus GN=SLC35E3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11
Identity = 42/139 (30.22%), Postives = 77/139 (55.40%), Query Frame = 2
Query:  200 QRKYSLTSFNLLGHTAPAQAATLLVIGPFLDNWLTDKRIYAYDYNISSVIFLILSCTIAVGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSN--ASTKPGGKERRSSLP 610
            Q +  + S  LL + AP  +A LLV  PF +    +  I+   +++S+++ ++LS  IA   NLS +  IG  + V++ + GH K  + L  G++ F K+ L+++  LGM+  +FG++ Y++   S + G K +    P
Sbjct:  177 QHELQVNSMQLLYYQAPMSSAMLLVAVPFFEPVFAEGGIFG-PWSVSALLMVLLSGVIAFMVNLSIYWIIGNTSPVTYNMFGHFKFCITLFGGYVLF-KDPLSINQGLGMLCTLFGILAYTHFKLSEQEGSKSKLVQRP 313          
The following BLAST results are available for this feature:
BLAST of CK940021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y1689_ARATH1.516e-3239.01Uncharacterized membrane protein At1g06890 OS=Arab... [more]
S35E3_BOVIN4.539e-1130.22Solute carrier family 35 member E3 OS=Bos taurus G... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004742_E11 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IIF_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK940021 ID=CK940021; Name=CK940021; organism=Citrus sinensis; type=EST; length=672bp
GGGCATCCTGCCTTTTGGAAGTTGTGTTGGACAAGATTCGATACTCCAGA
GACACAAAGTTAAGCATTGCATTTGTTCTATTGGGTGTTGGGGTTTGCAC
AGTTACTGATGTGAGTGTCAATGCCAGAGGCTTCATAGCTGCCTTAATTG
CAGTTTGGAGCACTTCTATTCAACAGTATTGCAGTATGTACATCACCTTC
AGCGGAAATATTCACTTACTTCTTTCAATCTATTGGGACATACCGCTCCT
GCACAAGCTGCAACACTGTTGGTAATAGGCCCATTTCTTGATAATTGGTT
GACAGACAAAAGAATTTATGCCTATGACTACAACATATCCTCAGTGATTT
TCCTAATCCTGTCATGCACGATAGCTGTAGGGACCAACCTCAGCCAGTTC
ATTTGCATCGGCAGATTCACAGCTGTGTCCTTTCAAGTACTCGGTCATAT
GAAGACAATACTCGTATTGATCATGGGATTCTTATTTTTTGGAAAAGAGG
GTCTCAACTTGCATGTGGTTCTGGGTATGATCATTGCTGTATTTGGAATG
ATTTGGTACAGCAATGCCTCGACGAAGCCCGGTGGTAAGGAACGACGGAG
TTCACTTCCTACAACCAGACCACAAAAACATGGTAATTTGGGAGAATCCA
ATGAACATGATGGGAAAGTCTG
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