CK940001

Overview
NameCK940001
Unique NameCK940001
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK940001 vs. ExPASy Swiss-Prot
Match: H2AV3_ORYSJ (Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica GN=Os03g0743400 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.697e-44
Identity = 97/131 (74.05%), Postives = 101/131 (77.10%), Query Frame = 1
Query:  208 KGLITGKTTIXXXXXXXXXX--PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 594
            KGL+  KTT             PVSRSSRAGLQFPVGR+HR LK+              Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
Sbjct:    7 KGLLAAKTTAAKSAEKDKGKKAPVSRSSRAGLQFPVGRIHRQLKQRTQANGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 137          
BLAST of CK940001 vs. ExPASy Swiss-Prot
Match: H2AV3_ARATH (Probable histone H2A variant 3 OS=Arabidopsis thaliana GN=At1g52740 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.697e-44
Identity = 97/130 (74.62%), Postives = 102/130 (78.46%), Query Frame = 1
Query:  205 AKGLITGKTTIXXXXXXXXXXPVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 594
            AKGLI GK +           P++RSSRAGLQFPVGRVHRLLK               YTAAILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKS+KE
Sbjct:    6 AKGLIMGKPS-GSDKDKDKKKPITRSSRAGLQFPVGRVHRLLKTRSTAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSAKE 134          
BLAST of CK940001 vs. ExPASy Swiss-Prot
Match: H2AV1_ORYSJ (Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica GN=Os03g0162200 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.331e-43
Identity = 96/132 (72.73%), Postives = 100/132 (75.76%), Query Frame = 1
Query:  208 KGLITGKTTIXXXXXXXXXX---PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 594
            KGL+  KTT              PVSRSSRAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK+SKE
Sbjct:    7 KGLLAAKTTAAKSADKDKDKKKAPVSRSSRAGLQFPVGRIHRQLKSRASAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE 138          
BLAST of CK940001 vs. ExPASy Swiss-Prot
Match: H2AV2_ORYSJ (Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica GN=Os10g0418000 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.782e-43
Identity = 95/133 (71.43%), Postives = 100/133 (75.19%), Query Frame = 1
Query:  208 KGLITGKTTIXXXXXXXXXX----PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 594
            KGL+  KTT               PVSRSSRAG+QFPVGR+HR LK               YTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK++KE
Sbjct:    7 KGLLAAKTTAAKAAADKDKDRKKAPVSRSSRAGIQFPVGRIHRQLKGRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTAKE 139          
BLAST of CK940001 vs. ExPASy Swiss-Prot
Match: H2AV1_ARATH (Histone H2A variant 1 OS=Arabidopsis thaliana GN=H2AV PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.396e-42
Identity = 91/130 (70.00%), Postives = 99/130 (76.15%), Query Frame = 1
Query:  208 KGLITGKT-TIXXXXXXXXXXPVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 594
            KGL+  KT             P+SRS+RAG+QFPVGR+HR LK               YTA+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK++KE
Sbjct:    7 KGLVAAKTMAANKDKDKDKKKPISRSARAGIQFPVGRIHRQLKTRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTTKE 136          
BLAST of CK940001 vs. ExPASy Swiss-Prot
Match: H2AV2_ARATH (Probable histone H2A variant 2 OS=Arabidopsis thaliana GN=At2g38810 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.671e-41
Identity = 90/130 (69.23%), Postives = 99/130 (76.15%), Query Frame = 1
Query:  208 KGLITGKTTIXXXXXXXXXXP-VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 594
            KGL+  KTT             +SRSSRAG+QFPVGR+HR LK+              YTA+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSL+NK +K+
Sbjct:    7 KGLLAAKTTAAAANKDSVKKKSISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLVNKVTKD 136          
BLAST of CK940001 vs. ExPASy Swiss-Prot
Match: H2AZL_XENTR (Histone H2A.Z-like OS=Xenopus tropicalis GN=h2a.zl PE=2 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 1.324e-38
Identity = 82/108 (75.93%), Postives = 88/108 (81.48%), Query Frame = 1
Query:  271 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 594
            ++RSSRAGLQFPVGR+HRLLK               YTAAILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELD LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   18 ITRSSRAGLQFPVGRIHRLLKNRTTSHGRVGGTAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLIGKKGQQ 125          
BLAST of CK940001 vs. ExPASy Swiss-Prot
Match: H2AZL_XENLA (Histone H2A.Z-like OS=Xenopus laevis GN=h2a.zl1 PE=2 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 1.324e-38
Identity = 82/108 (75.93%), Postives = 88/108 (81.48%), Query Frame = 1
Query:  271 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 594
            ++RSSRAGLQFPVGR+HRLLK               YTAAILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELD LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   18 ITRSSRAGLQFPVGRIHRLLKNRTTSHGRVGGTAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLIGKKGQQ 125          
BLAST of CK940001 vs. ExPASy Swiss-Prot
Match: H2AZ_SHEEP (Histone H2A.Z OS=Ovis aries GN=H2AFZ PE=2 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 6.569e-38
Identity = 82/108 (75.93%), Postives = 87/108 (80.56%), Query Frame = 1
Query:  271 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 594
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125          
BLAST of CK940001 vs. ExPASy Swiss-Prot
Match: H2AZ_RAT (Histone H2A.Z OS=Rattus norvegicus GN=H2afz PE=1 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 6.569e-38
Identity = 82/108 (75.93%), Postives = 87/108 (80.56%), Query Frame = 1
Query:  271 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 594
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125          
The following BLAST results are available for this feature:
BLAST of CK940001 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
H2AV3_ORYSJ4.697e-4474.05Probable histone H2A variant 3 OS=Oryza sativa sub... [more]
H2AV3_ARATH4.697e-4474.62Probable histone H2A variant 3 OS=Arabidopsis thal... [more]
H2AV1_ORYSJ2.331e-4372.73Probable histone H2A variant 1 OS=Oryza sativa sub... [more]
H2AV2_ORYSJ6.782e-4371.43Probable histone H2A variant 2 OS=Oryza sativa sub... [more]
H2AV1_ARATH4.396e-4270.00Histone H2A variant 1 OS=Arabidopsis thaliana GN=H... [more]
H2AV2_ARATH1.671e-4169.23Probable histone H2A variant 2 OS=Arabidopsis thal... [more]
H2AZL_XENTR1.324e-3875.93Histone H2A.Z-like OS=Xenopus tropicalis GN=h2a.zl... [more]
H2AZL_XENLA1.324e-3875.93Histone H2A.Z-like OS=Xenopus laevis GN=h2a.zl1 PE... [more]
H2AZ_SHEEP6.569e-3875.93Histone H2A.Z OS=Ovis aries GN=H2AFZ PE=2 SV=3[more]
H2AZ_RAT6.569e-3875.93Histone H2A.Z OS=Rattus norvegicus GN=H2afz PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004742_G12 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IIF_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK940001 ID=CK940001; Name=CK940001; organism=Citrus sinensis; type=EST; length=852bp
GGGGAACTCAAAGTCGCCACCCGAAGTCACTCGTTCTCTCTCTCTCTCTC
TCACACACAAAAATCTCAAACGCTCGCTTTGCTTTATCTCTTTCTTTCTT
CTCCGATAATTTTCATCTCAGAAAAAATTAAAAATAATTAAATAAATAAT
TAATTAATTTAAAAGAAGCTGTAGCAATTAGGCGGGAAAATGTCGGGCAA
AGGAGCCAAAGGACTGATAACAGGCAAAACCACCATTAACAACAACAAGG
ATAAGGACAAGAAGAAACCCGTCTCCCGTTCTTCTCGTGCTGGTCTTCAG
TTCCCAGTGGGAAGGGTCCATCGTCTACTAAAGGAAAGGGCTGCTGCTCA
CGGAAGGGTTGGCGCAACAGCTGCTGTTTATACAGCAGCCATTTTGGAAT
ATCTAACTGCCGAAGTGTTGGAGTTGGCAGGGAATGCTAGCAAGGATTTG
AAGGTCAAACGTATTACTCCAAGGCATTTGCAGCTTGCTATCCGAGGAGA
TGAAGAACTTGACACTCTCATTAAAGGAACCATAGCCGGTGGAGGAGTTA
TTCCTCATATCCACAAGTCCCTCATCAATAAATCCTCCAAAGAGTAGTTC
GTGACACCGTCATCCTCTCGGCTTTGTTTATGTGTGTACTTTTAGCTGTG
CTGAAATATCTAAATGAGAAATGATGCCAAAGATGTGTTAATGCTAGGAA
TCTGCATTCTTCAATCCTCATTTCATGCAGCGACGAATTATGGCGCTTGT
TTTTTCCCATGTTGGTATTGAACTGTTACTGTTTAATTTTTAAATAATTC
TATATCTGTTTCTTTGTTTTCAATTCGAATATAATGATTTTATTTATTTT
TA
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