CK939941

Overview
NameCK939941
Unique NameCK939941
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK939941 vs. ExPASy Swiss-Prot
Match: BH135_ARATH (Transcription factor bHLH135 OS=Arabidopsis thaliana GN=BHLH135 PE=4 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.658e-25
Identity = 62/93 (66.67%), Postives = 81/93 (87.10%), Query Frame = 2 
Query:  158 MSSRRSR--QAAGVSRISDDQIIELVAKLRQLLPEIRD-RRPQKVSASKVLQETCNYIRSLHREVDDLSERLSQLLSTIDADSPEAAIIRSLI 427
            MS RRSR  Q++G SRIS+DQI +L+ KL+QLLPE+RD RR  KVSA++VLQ+TCNYIR+LHREVDDLSERLS+LL+  ++D+ +AA+IRSL+
Sbjct:    1 MSGRRSRSRQSSGTSRISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLA--NSDTAQAALIRSLL 91
The following BLAST results are available for this feature:
BLAST of CK939941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
BH135_ARATH4.658e-2566.67Transcription factor bHLH135 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004743_F05 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IIIF_F05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939941 ID=CK939941; Name=CK939941; organism=Citrus sinensis; type=EST; length=610bp
GGGGGAACTTCATTTCAGAGTTCATTCTGCGCAACCCCTTCGGCCTTCAG
TATCTTTCTTTTTCATTTTTCGCAAGTGAATATTGCAAGTGCCTTTTAAT
TAGCTCATTTACATTAATATATACAAAGCAAGTCAGCAGCTAGCTCCAAG
GATCATCATGTCTAGCAGAAGGTCGAGGCAAGCTGCCGGTGTATCGAGGA
TCAGTGATGATCAGATCATTGAACTTGTCGCAAAGCTACGCCAACTCCTC
CCTGAGATTCGCGATAGACGCCCACAAAAGGTTTCAGCTTCTAAGGTTCT
ACAGGAAACTTGCAATTATATTAGAAGCTTGCACAGGGAAGTTGATGACC
TAAGTGAGCGACTATCCCAGCTTTTATCTACTATAGATGCTGATAGTCCC
GAAGCTGCGATAATTAGGAGTTTAATTATGTAATTCTGTAGCCTTAATTA
CTTAATTATCTTTCTAGTTCTTCTCTACTTTAATCTTACTAATTAAGTTT
TGGTCACTACATAGATCAAACAAGAACTAGAATGTATTGTAACTATAATT
AAGTTTGTATAATAAAAGGACTTGCACTAGCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAA
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