CK939927

Overview
NameCK939927
Unique NameCK939927
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length816
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_CITSI (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Citrus sinensis GN=ndhA PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.598e-54
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1 
Query:  496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYIFV 807
            LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYIFV
Sbjct:  185 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYIFV 288
[Close]
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_PHAVU (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Phaseolus vulgaris GN=ndhA PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 6.785e-53
Identity = 100/105 (95.24%), Postives = 104/105 (99.05%), Query Frame = 1 
Query:  496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYIFVS 810
            LSNSLSTVDIV AQSKYGFWGWNLWRQP+GF+VFLISSLAECERLPFDLPEAEEEL+AGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSN+SIPYIFVS
Sbjct:  185 LSNSLSTVDIVDAQSKYGFWGWNLWRQPMGFLVFLISSLAECERLPFDLPEAEEELIAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNISIPYIFVS 289
[Close]
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_TOBAC (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Nicotiana tabacum GN=ndhA PE=3 SV=3)

HSP 1 Score: 205.682 bits (522), Expect = 2.578e-52
Identity = 101/104 (97.12%), Postives = 102/104 (98.08%), Query Frame = 1 
Query:  496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYIFV 807
            LSNSLSTVDIV AQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFY+ASYLNLLVSSLFVTVLYLGG NLSIPYIFV
Sbjct:  189 LSNSLSTVDIVEAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYIASYLNLLVSSLFVTVLYLGGWNLSIPYIFV 292
[Close]
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_SOLLC (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Solanum lycopersicum GN=ndhA PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.578e-52
Identity = 101/104 (97.12%), Postives = 102/104 (98.08%), Query Frame = 1 
Query:  496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYIFV 807
            LSNSLSTVDIV AQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFY+ASYLNLLVSSLFVTVLYLGG NLSIPYIFV
Sbjct:  185 LSNSLSTVDIVEAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYIASYLNLLVSSLFVTVLYLGGWNLSIPYIFV 288
[Close]
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_NICSY (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Nicotiana sylvestris GN=ndhA PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.578e-52
Identity = 101/104 (97.12%), Postives = 102/104 (98.08%), Query Frame = 1 
Query:  496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYIFV 807
            LSNSLSTVDIV AQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFY+ASYLNLLVSSLFVTVLYLGG NLSIPYIFV
Sbjct:  185 LSNSLSTVDIVEAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYIASYLNLLVSSLFVTVLYLGGWNLSIPYIFV 288
[Close]
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_SOYBN (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Glycine max GN=ndhA PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.367e-52
Identity = 99/105 (94.29%), Postives = 102/105 (97.14%), Query Frame = 1 
Query:  496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYIFVS 810
            LSNSLSTVDIV AQSKYGFWGWNLWRQP+GFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNL +SSLFVTVLY GGSN+SIPYIFVS
Sbjct:  185 LSNSLSTVDIVDAQSKYGFWGWNLWRQPMGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLFISSLFVTVLYFGGSNISIPYIFVS 289
[Close]
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_COFAR (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Coffea arabica GN=ndhA PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.398e-52
Identity = 101/105 (96.19%), Postives = 102/105 (97.14%), Query Frame = 1 
Query:  496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYIFVS 810
            LSNS STVDIV AQSKYGFWGWNLWRQPIGFI+FLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG NLSIPYIFVS
Sbjct:  185 LSNSSSTVDIVEAQSKYGFWGWNLWRQPIGFIIFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWNLSIPYIFVS 289
[Close]
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_SPIOL (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Spinacia oleracea GN=ndhA PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 9.797e-52
Identity = 99/105 (94.29%), Postives = 102/105 (97.14%), Query Frame = 1 
Query:  496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYIFVS 810
            LSNS STVDIV AQSKYGFWGWNLWRQPIGFIVF+ISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLL+SSLFVTVLYLGG NLSIPYIF+S
Sbjct:  187 LSNSSSTVDIVEAQSKYGFWGWNLWRQPIGFIVFIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLISSLFVTVLYLGGWNLSIPYIFIS 291
[Close]
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_PLAOC (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Platanus occidentalis GN=ndhA PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 9.797e-52
Identity = 100/104 (96.15%), Postives = 101/104 (97.12%), Query Frame = 1 
Query:  496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYIFV 807
            LSNSLSTVDIV AQSKYGFWGWNLWRQPIGF VFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG NLSIPYIF+
Sbjct:  185 LSNSLSTVDIVEAQSKYGFWGWNLWRQPIGFAVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWNLSIPYIFI 288
[Close]
BLAST of CK939927 vs. ExPASy Swiss-Prot
Match: NU1C_JASNU (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Jasminum nudiflorum GN=ndhA PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 9.797e-52
Identity = 100/104 (96.15%), Postives = 101/104 (97.12%), Query Frame = 1 
Query:  496 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYIFV 807
            LSNS STVDIV AQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG NLSIPY+FV
Sbjct:  186 LSNSFSTVDIVEAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWNLSIPYLFV 289
The following BLAST results are available for this feature:
BLAST of CK939927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NU1C_CITSI3.598e-54100.00NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_PHAVU6.785e-5395.24NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_TOBAC2.578e-5297.12NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_SOLLC2.578e-5297.12NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_NICSY2.578e-5297.12NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_SOYBN3.367e-5294.29NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_COFAR4.398e-5296.19NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_SPIOL9.797e-5294.29NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_PLAOC9.797e-5296.15NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_JASNU9.797e-5296.15NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004743_F11 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IIIF_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939927 ID=CK939927; Name=CK939927; organism=Citrus sinensis; type=EST; length=816bp
GCGGGTCTCAGANNNAAGAAGAGGAACAAAAANNNAGAAAAAATACAATT
ACAATCTAAAAGAATCCTTTCTTTCATATATTGATAGAAATCAAATTCGT
GTCATGATTCATGAACTAGTGTAATGGCGAATTCTTTTTCGTAATCGAAA
ATAAAAGGATGGGTTGAAATATCGAGTGATATTTCTACAAGAGTATTTTA
TTGAAGGGTTGATTAAGTTATTACTCAACACAGAAAATTTGAAATTCGTA
AAGGATGAGATTAATTCAGAAATACTGTTTTTTTATCCTTAGAGCAGACA
GAATTCCAGTGGTATAATTGGGGATCCTCCGCTAGATTTTGACTTTATCC
ATCCTATAACCATATAAAAATCAAAATAACTAATACCGGTCCGGTCCTTA
CATTTATTTGTGGCCCTGAGGAGCCGTATGAGGTGAAAATCTCATGTACG
GTTTTGTAATAGCGATGGAAACCGTAATGTTACCACCGACTATGATTATC
TAACAGTTTAAGTACAGTTGATATAGTTGGGGCGCAATCAAAATATGGTT
TTTGGGGGTGGAATTTGTGGCGTCAACCTATAGGGTTTATCGTTTTTCTA
ATTTCTTCCCTAGCGGAATGCGAGAGATTACCTTTTGATTTACCAGAAGC
GGAAGAAGAATTAGTAGCCGGTTATCAAACCGAATATTCAGGAATAAAAT
TTGGTTTATTTTACGTTGCTTCCTATCTAAATCTACTAGTTTCCTCATTA
TTTGTAACAGTTCTTTACTTGGGAGGTTCGAATCTTTCCATTCCATACAT
ATTTGTTTCCTGGGCT
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