CK939887

Overview
NameCK939887
Unique NameCK939887
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length809
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2230 contig Csv1_Contig2230:1..809. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939887 vs. ExPASy Swiss-Prot
Match: ARP4_ARATH (Actin-related protein 4 OS=Arabidopsis thaliana GN=ARP4 PE=1 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 1.017e-85
Identity = 155/224 (69.20%), Postives = 184/224 (82.14%), Query Frame = 2
Query:  137 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMD-IDDSANAERNSGSAIDSKNNVDSNKGKGKRKLYVGTQSLGFRRDHMEVLSPLKDGXXXXXXXXXXXXXHAFRECLLIDPKEHPMLLAEPSSNTQQQRERTAELIFEKYNVPALFLAKNAVLTSFALGRATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKKLESKGI 805
            MYGGDEVSAIV+DLGSHTCKAGYAGEDAPKAVFPSV+GA+D ++ +D   ++ + + ++ DSK   +S K K KRKLYVG+Q++ +RRDHMEVLSP+KDG             HAF+ CL+IDP EHPMLLAEP  NTQQQRE+ AEL+FEKY VPALF+AKN VLTSFA GRATSLVVDCGGGSTT++PVHDGYVLQK V +SP+GGEFLT+CL+K LESKGI
Sbjct:    1 MYGGDEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVIGAVDGVEAMDVDVDSTKTNSNSEDSKT--ESEKEKSKRKLYVGSQAMSYRRDHMEVLSPIKDGIVSDWDLVDNIWEHAFKSCLMIDPTEHPMLLAEPPLNTQQQREKAAELMFEKYKVPALFMAKNPVLTSFATGRATSLVVDCGGGSTTISPVHDGYVLQKAVVSSPLGGEFLTDCLLKSLESKGI 222          
BLAST of CK939887 vs. ExPASy Swiss-Prot
Match: ARP4_ORYSJ (Actin-related protein 4 OS=Oryza sativa subsp. japonica GN=ARP4 PE=2 SV=1)

HSP 1 Score: 306.99 bits (785), Expect = 8.060e-83
Identity = 158/226 (69.91%), Postives = 182/226 (80.53%), Query Frame = 2
Query:  137 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDDSANAERNSGSAIDSKNN---VDSNKGKGKRKLYVGTQSLGFRRDHMEVLSPLKDGXXXXXXXXXXXXXHAFRECLLIDPKEHPMLLAEPSSNTQQQRERTAELIFEKYNVPALFLAKNAVLTSFALGRATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKKLESKGI 805
            MYGGDEVSAIVID+GS++CKAGYAG+D PKAVFPSVVG+I+Q    D A A++ + +A DSKN    +D +K K KRKLYVG Q L FRRDHMEV+SP+KDG             HAFR+ LLI+P+EHPML+AEPS+NT QQRE+ AEL+FEKY VPALFLAKNAVLTSFA GRATSLVVD GGGST VA VHDGYVLQK V TSPIGGEFLT+C+MK LESKG+
Sbjct:    1 MYGGDEVSAIVIDVGSYSCKAGYAGDDTPKAVFPSVVGSIEQTGETDEAKADKEAEAASDSKNGAKPMDVDKAKTKRKLYVG-QELEFRRDHMEVISPMKDGTVTDWDIVDNIWNHAFRQRLLINPEEHPMLIAEPSTNTGQQREKAAELMFEKYKVPALFLAKNAVLTSFASGRATSLVVDSGGGSTVVAAVHDGYVLQKSVATSPIGGEFLTDCMMKSLESKGV 225          
BLAST of CK939887 vs. ExPASy Swiss-Prot
Match: ARP4_ORYSI (Actin-related protein 4 OS=Oryza sativa subsp. indica GN=ARP4 PE=2 SV=2)

HSP 1 Score: 306.99 bits (785), Expect = 8.060e-83
Identity = 158/226 (69.91%), Postives = 182/226 (80.53%), Query Frame = 2
Query:  137 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDDSANAERNSGSAIDSKNN---VDSNKGKGKRKLYVGTQSLGFRRDHMEVLSPLKDGXXXXXXXXXXXXXHAFRECLLIDPKEHPMLLAEPSSNTQQQRERTAELIFEKYNVPALFLAKNAVLTSFALGRATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLTNCLMKKLESKGI 805
            MYGGDEVSAIVID+GS++CKAGYAG+D PKAVFPSVVG+I+Q    D A A++ + +A DSKN    +D +K K KRKLYVG Q L FRRDHMEV+SP+KDG             HAFR+ LLI+P+EHPML+AEPS+NT QQRE+ AEL+FEKY VPALFLAKNAVLTSFA GRATSLVVD GGGST VA VHDGYVLQK V TSPIGGEFLT+C+MK LESKG+
Sbjct:    1 MYGGDEVSAIVIDVGSYSCKAGYAGDDTPKAVFPSVVGSIEQTGETDEAKADKEAEAASDSKNGAKPMDVDKAKTKRKLYVG-QELEFRRDHMEVISPMKDGTVTDWDIVDNIWNHAFRQRLLINPEEHPMLIAEPSTNTGQQREKAAELMFEKYKVPALFLAKNAVLTSFASGRATSLVVDSGGGSTVVAAVHDGYVLQKSVATSPIGGEFLTDCMMKSLESKGV 225          
BLAST of CK939887 vs. ExPASy Swiss-Prot
Match: ARP4A_ARATH (Actin-related protein 4A OS=Arabidopsis thaliana GN=ARP4A PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.033e-46
Identity = 97/146 (66.44%), Postives = 109/146 (74.66%), Query Frame = 2
Query:  137 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQ--MDIDDSANAERNSGSAIDSKNNVDSNKGKGKRKLYVGTQSLGFRRDHMEVLSPLKDGXXXXXXXXXXXXXHAFRECLLIDPKEHPMLLAEPSSNTQQQRERT 568
            MYGGDEVSAIV+DLGSHTCKAGYAGEDAPKAVFPSVVGAID   MDIDD+AN         D+K   +S+K KGKRKLY G+Q+L FRRD ME+LSP KDG             HAFR CL+IDP EHPMLLAEP  N+QQQRE++
Sbjct:    1 MYGGDEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVVGAIDGNGMDIDDAANTTE------DAK---ESDKEKGKRKLYTGSQALNFRRDQMEILSPTKDGIVTDWDMVDNVWDHAFRNCLMIDPTEHPMLLAEPPLNSQQQREKS 137          
BLAST of CK939887 vs. ExPASy Swiss-Prot
Match: ACL6A_MACFA (Actin-like protein 6A OS=Macaca fascicularis GN=ACTL6A PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.344e-45
Identity = 93/212 (43.87%), Postives = 132/212 (62.26%), Query Frame = 2
Query:  137 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDDSANAERNSGSAIDSKNNVDSNKGK-GKRKLYVGTQSLGFRRDHMEVLSPLKDGXXXXXXXXXXXXXHAFRECLLIDPKEHPMLLAEPSSNTQQQRERTAELIFEKYNVPALFLAKNAVLTSFALGRATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLT 769
            +YGGDEV A+V D+GS+T +AGYAGED PK  FP+ +G +           ER+ GS +     +D +KGK G    Y+ T +L   R++ME +SPLK+G             H ++  +  +   HP+L++E   NT+ +RE+  EL+FE YN+PA FL K AVLT+FA GR+T L++D G   TT  PVHDGYVLQ+G+  SP+ G+F+T
Sbjct:    5 VYGGDEVGALVFDIGSYTVRAGYAGEDCPKVDFPTAIGMV----------VERDDGSTL---MEIDGDKGKQGGPTYYIATNALRVPRENMEAISPLKNGMVEDWDSFQAILDHTYKMHVKSEASLHPVLMSEAPWNTRAKREKLTELMFEHYNIPAFFLCKTAVLTAFANGRSTGLILDSGATHTTAIPVHDGYVLQQGIVKSPLAGDFIT 203          
BLAST of CK939887 vs. ExPASy Swiss-Prot
Match: ACL6A_HUMAN (Actin-like protein 6A OS=Homo sapiens GN=ACTL6A PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.755e-45
Identity = 93/212 (43.87%), Postives = 132/212 (62.26%), Query Frame = 2
Query:  137 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDDSANAERNSGSAIDSKNNVDSNKGK-GKRKLYVGTQSLGFRRDHMEVLSPLKDGXXXXXXXXXXXXXHAFRECLLIDPKEHPMLLAEPSSNTQQQRERTAELIFEKYNVPALFLAKNAVLTSFALGRATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLT 769
            +YGGDEV A+V D+GS+T +AGYAGED PK  FP+ +G +           ER+ GS +     +D +KGK G    Y+ T +L   R++ME +SPLK+G             H ++  +  +   HP+L++E   NT+ +RE+  EL+FE YN+PA FL K AVLT+FA GR+T L++D G   TT  PVHDGYVLQ+G+  SP+ G+F+T
Sbjct:    5 VYGGDEVGALVFDIGSYTVRAGYAGEDCPKVDFPTAIGMV----------VERDDGSTL---MEIDGDKGKQGGPTYYIDTNALRVPRENMEAISPLKNGMVEDWDSFQAILDHTYKMHVKSEASLHPVLMSEAPWNTRAKREKLTELMFEHYNIPAFFLCKTAVLTAFANGRSTGLILDSGATHTTAIPVHDGYVLQQGIVKSPLAGDFIT 203          
BLAST of CK939887 vs. ExPASy Swiss-Prot
Match: ACL6A_MOUSE (Actin-like protein 6A OS=Mus musculus GN=Actl6a PE=1 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 8.712e-45
Identity = 92/212 (43.40%), Postives = 132/212 (62.26%), Query Frame = 2
Query:  137 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDDSANAERNSGSAIDSKNNVDSNKGK-GKRKLYVGTQSLGFRRDHMEVLSPLKDGXXXXXXXXXXXXXHAFRECLLIDPKEHPMLLAEPSSNTQQQRERTAELIFEKYNVPALFLAKNAVLTSFALGRATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLT 769
            +YGGDEV A+V D+GS+T +AGYAGED PK  FP+ +G +           ER+ GS +     +D +KGK G    Y+ T +L   R++ME +SPLK+G             H ++  +  +   HP+L++E   NT+ +RE+  EL+FE Y++PA FL K AVLT+FA GR+T L++D G   TT  PVHDGYVLQ+G+  SP+ G+F+T
Sbjct:    5 VYGGDEVGALVFDIGSYTVRAGYAGEDCPKVDFPTAIGVV----------LERDDGSTM---MEIDGDKGKQGGPTYYIDTNALRVPRENMEAISPLKNGMVEDWDSFQAILDHTYKMHVKSEASLHPVLMSEAPWNTRAKREKLTELMFEHYSIPAFFLCKTAVLTAFANGRSTGLILDSGATHTTAIPVHDGYVLQQGIVKSPLAGDFIT 203          
BLAST of CK939887 vs. ExPASy Swiss-Prot
Match: ACL6B_RAT (Actin-like protein 6B OS=Rattus norvegicus GN=Actl6b PE=1 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 4.780e-43
Identity = 91/211 (43.13%), Postives = 129/211 (61.14%), Query Frame = 2
Query:  137 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDDSANAERNSGSAIDSKNNVDSNKGKGKRKLYVGTQSLGFRRDHMEVLSPLKDGXXXXXXXXXXXXXHAFRECLLIDPKEHPMLLAEPSSNTQQQRERTAELIFEKYNVPALFLAKNAVLTSFALGRATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLT 769
            +YGGDEV A+V D+GS + +AGYAGED PKA FP+ VG +          AE   G  ++ +      K K  +  ++ T +L   RD  EV+SPLK+G             H + + +  +P  HP+L++E   NT+ +RE+  EL+FE+YN+PA FL K AVLT+FA GR+T LV+D G   TT  PVHDGYVLQ+G+  SP+ G+F++
Sbjct:    5 VYGGDEVGALVFDIGSFSVRAGYAGEDCPKADFPTTVGLLA---------AEEGGGLELEGE------KEKKGKIFHIDTNALHVPRDGAEVMSPLKNGMIEDWECFRAILDHTYSKHVKSEPNLHPVLMSEAPWNTRAKREKLTELMFEQYNIPAFFLCKTAVLTAFANGRSTGLVLDSGATHTTAIPVHDGYVLQQGIVKSPLAGDFIS 200          
BLAST of CK939887 vs. ExPASy Swiss-Prot
Match: ACL6B_MOUSE (Actin-like protein 6B OS=Mus musculus GN=Actl6b PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.780e-43
Identity = 91/211 (43.13%), Postives = 129/211 (61.14%), Query Frame = 2
Query:  137 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDDSANAERNSGSAIDSKNNVDSNKGKGKRKLYVGTQSLGFRRDHMEVLSPLKDGXXXXXXXXXXXXXHAFRECLLIDPKEHPMLLAEPSSNTQQQRERTAELIFEKYNVPALFLAKNAVLTSFALGRATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLT 769
            +YGGDEV A+V D+GS + +AGYAGED PKA FP+ VG +          AE   G  ++ +      K K  +  ++ T +L   RD  EV+SPLK+G             H + + +  +P  HP+L++E   NT+ +RE+  EL+FE+YN+PA FL K AVLT+FA GR+T LV+D G   TT  PVHDGYVLQ+G+  SP+ G+F++
Sbjct:    5 VYGGDEVGALVFDIGSFSVRAGYAGEDCPKADFPTTVGLLA---------AEEGGGLELEGE------KEKKGKIFHIDTNALHVPRDGAEVMSPLKNGMIEDWECFRAILDHTYSKHVKSEPNLHPVLMSEAPWNTRAKREKLTELMFEQYNIPAFFLCKTAVLTAFANGRSTGLVLDSGATHTTAIPVHDGYVLQQGIVKSPLAGDFIS 200          
BLAST of CK939887 vs. ExPASy Swiss-Prot
Match: ACL6B_HUMAN (Actin-like protein 6B OS=Homo sapiens GN=ACTL6B PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.780e-43
Identity = 91/211 (43.13%), Postives = 129/211 (61.14%), Query Frame = 2
Query:  137 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDDSANAERNSGSAIDSKNNVDSNKGKGKRKLYVGTQSLGFRRDHMEVLSPLKDGXXXXXXXXXXXXXHAFRECLLIDPKEHPMLLAEPSSNTQQQRERTAELIFEKYNVPALFLAKNAVLTSFALGRATSLVVDCGGGSTTVAPVHDGYVLQKGVTTSPIGGEFLT 769
            +YGGDEV A+V D+GS + +AGYAGED PKA FP+ VG +          AE   G  ++       +K K  +  ++ T +L   RD  EV+SPLK+G             H + + +  +P  HP+L++E   NT+ +RE+  EL+FE+YN+PA FL K AVLT+FA GR+T LV+D G   TT  PVHDGYVLQ+G+  SP+ G+F++
Sbjct:    5 VYGGDEVGALVFDIGSFSVRAGYAGEDCPKADFPTTVGLLA---------AEEGGGLELEG------DKEKKGKIFHIDTNALHVPRDGAEVMSPLKNGMIEDWECFRAILDHTYSKHVKSEPNLHPVLMSEAPWNTRAKREKLTELMFEQYNIPAFFLCKTAVLTAFANGRSTGLVLDSGATHTTAIPVHDGYVLQQGIVKSPLAGDFIS 200          
The following BLAST results are available for this feature:
BLAST of CK939887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 447
Match NameE-valueIdentityDescription
ARP4_ARATH1.017e-8569.20Actin-related protein 4 OS=Arabidopsis thaliana GN... [more]
ARP4_ORYSJ8.060e-8369.91Actin-related protein 4 OS=Oryza sativa subsp. jap... [more]
ARP4_ORYSI8.060e-8369.91Actin-related protein 4 OS=Oryza sativa subsp. ind... [more]
ARP4A_ARATH6.033e-4666.44Actin-related protein 4A OS=Arabidopsis thaliana G... [more]
ACL6A_MACFA1.344e-4543.87Actin-like protein 6A OS=Macaca fascicularis GN=AC... [more]
ACL6A_HUMAN1.755e-4543.87Actin-like protein 6A OS=Homo sapiens GN=ACTL6A PE... [more]
ACL6A_MOUSE8.712e-4543.40Actin-like protein 6A OS=Mus musculus GN=Actl6a PE... [more]
ACL6B_RAT4.780e-4343.13Actin-like protein 6B OS=Rattus norvegicus GN=Actl... [more]
ACL6B_MOUSE4.780e-4343.13Actin-like protein 6B OS=Mus musculus GN=Actl6b PE... [more]
ACL6B_HUMAN4.780e-4343.13Actin-like protein 6B OS=Homo sapiens GN=ACTL6B PE... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004744_D02 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IVF_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939887 ID=CK939887; Name=CK939887; organism=Citrus sinensis; type=EST; length=809bp
GGGGGAGACTTCGAGGAGAAACTGCCCCGTCCCTCTTCCTCGACGGGTCA
AGCCAATTCTAAAACCCTAAACCCACACTCAACAAAATCCTCTGCGAAAT
TTAAACTTCTCTGTTGCTTTCTCTGAAGCTGCAATCATGTACGGCGGCGA
CGAAGTATCAGCCATAGTGATCGACTTGGGCTCTCACACTTGCAAAGCGG
GTTACGCCGGTGAGGATGCACCCAAGGCCGTTTTTCCTTCGGTTGTTGGG
GCTATTGACCAAATGGATATTGATGATTCTGCAAATGCTGAAAGGAATTC
CGGTTCTGCTATAGATTCTAAGAACAATGTTGATTCTAACAAAGGCAAAG
GAAAACGCAAGTTGTATGTTGGAACTCAATCTTTAGGGTTTCGCCGTGAT
CATATGGAGGTGCTATCACCCTTAAAAGATGGAGTAGTGGTTGACTGGGA
TATTGTGGATAGCATATGGGACCATGCTTTCAGGGAATGTTTATTGATTG
ATCCCAAAGAGCATCCAATGCTACTTGCTGAACCATCTTCAAACACCCAG
CAGCAGAGAGAAAGGACGGCAGAACTTATATTTGAAAAGTACAACGTTCC
AGCCTTATTCTTGGCGAAAAATGCTGTTCTCACTTCTTTTGCATTAGGGC
GTGCTACCTCACTGGTTGTTGATTGTGGTGGAGGATCGACTACAGTAGCC
CCAGTACATGATGGCTATGTTCTCCAAAAGGGTGTTACAACTTCTCCTAT
TGGAGGAGAATTTCTTACTAATTGCTTGATGAAAAAGCTGGAGAGCAAAG
GTATCACAA
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