CK939871

Overview
NameCK939871
Unique NameCK939871
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9517 contig Csv1_Contig9517:91..791. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939871 vs. ExPASy Swiss-Prot
Match: FPPS1_LUPAL (Farnesyl pyrophosphate synthetase 1 OS=Lupinus albus GN=FPS1 PE=2 SV=1)

HSP 1 Score: 397.897 bits (1021), Expect = 2.728e-110
Identity = 189/220 (85.91%), Postives = 202/220 (91.82%), Query Frame = 3
Query:   42 MSDLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCTEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDI 701
            M+DL+S F+ VY VLK ELL+DPAFEF  DSRQW+DRMLDYNVPGGKLNRGLSV+DSYRLLK+G EL DDE FL+SALGWC EWLQAYFLVLDDIMD SHTRRGQPCWFRVPKVGMIAANDGVLLRNHI RILK HFR KPYY DLLDLFNEVEFQTASGQMIDLITT+EGEKDLSKY+L LHRRIVQYKTAYYSFYLPVACALLM GENLD H++VK+I
Sbjct:    1 MADLRSTFLNVYSVLKSELLHDPAFEFSPDSRQWLDRMLDYNVPGGKLNRGLSVIDSYRLLKDGHELNDDEIFLASALGWCIEWLQAYFLVLDDIMDNSHTRRGQPCWFRVPKVGMIAANDGVLLRNHIPRILKKHFRGKPYYADLLDLFNEVEFQTASGQMIDLITTLEGEKDLSKYTLSLHRRIVQYKTAYYSFYLPVACALLMVGENLDNHIDVKNI 220          
BLAST of CK939871 vs. ExPASy Swiss-Prot
Match: FPPS_HELAN (Farnesyl pyrophosphate synthetase OS=Helianthus annuus GN=FPS1 PE=2 SV=1)

HSP 1 Score: 392.889 bits (1008), Expect = 8.777e-109
Identity = 187/219 (85.39%), Postives = 203/219 (92.69%), Query Frame = 3
Query:   45 SDLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCTEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDI 701
            SDLKS+F+ VY  LK ELLNDPAFEF HDSRQW+D+MLDYNVPGGKLNRGLSVVDSY+LLK G ELTDDE FL+SALGWC EWLQAYFLVLDDIMDGSHTRRGQPCWFR+PKVGMIAANDG++LRNH+ RILK HFR KPYYVDL+DLFNEVEFQTASGQMIDLITT+ GEKDLSKYSL +HRRIVQYKTAYYSFYLPVACALLM GE+LD HVEVK++
Sbjct:    3 SDLKSKFLHVYQTLKSELLNDPAFEFHHDSRQWIDKMLDYNVPGGKLNRGLSVVDSYQLLK-GAELTDDEIFLASALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRLPKVGMIAANDGLILRNHVPRILKKHFRGKPYYVDLVDLFNEVEFQTASGQMIDLITTLVGEKDLSKYSLSIHRRIVQYKTAYYSFYLPVACALLMFGEDLDNHVEVKNV 220          
BLAST of CK939871 vs. ExPASy Swiss-Prot
Match: FPPS_ARTAN (Farnesyl pyrophosphate synthetase OS=Artemisia annua GN=FPS1 PE=2 SV=1)

HSP 1 Score: 389.037 bits (998), Expect = 1.267e-107
Identity = 185/219 (84.47%), Postives = 204/219 (93.15%), Query Frame = 3
Query:   45 SDLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCTEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDI 701
            +DLKS+F++VY  LK EL+NDPAFEFD DSRQW+++MLDYNVPGGKLNRGLSVVDSY+LLK G EL+DDE FLSSALGWC EWLQAYFLVLDDIMD SHTRRGQPCWFR+PKVGMIAANDG+LLRNH+ RILK HFR KPYYVDL+DLFNEVEFQTASGQMIDLITT+ GEKDLSKYSL +HRRIVQYKTAYYSFYLPVACALLM GE+LDKHVEVK++
Sbjct:    4 TDLKSKFLKVYDTLKSELINDPAFEFDDDSRQWIEKMLDYNVPGGKLNRGLSVVDSYQLLKGG-ELSDDEIFLSSALGWCIEWLQAYFLVLDDIMDESHTRRGQPCWFRLPKVGMIAANDGILLRNHVPRILKKHFRGKPYYVDLVDLFNEVEFQTASGQMIDLITTLVGEKDLSKYSLSIHRRIVQYKTAYYSFYLPVACALLMFGEDLDKHVEVKNV 221          
BLAST of CK939871 vs. ExPASy Swiss-Prot
Match: FPPS2_LUPAL (Farnesyl pyrophosphate synthetase 2 OS=Lupinus albus GN=FPS2 PE=2 SV=1)

HSP 1 Score: 388.652 bits (997), Expect = 1.655e-107
Identity = 184/220 (83.64%), Postives = 199/220 (90.45%), Query Frame = 3
Query:   42 MSDLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCTEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDI 701
            M+D KS F+ VY +LK ELL DPAFEF  DSRQWV+RMLDYNVPGGKLNRGLSV+DSY+LLK+G+EL D+E FL+SALGWC EWLQAYFLVLDDIMD SHTRRG PCWFRVPKVGMIA NDGV+LRNHI RILK HFR KPYYVDLLDLFNEVEFQTASGQMIDLITT+EGEKDLSKY+L LHRRIVQYKTAYYSFYLPVACALLM GENLD H +VK+I
Sbjct:    1 MADPKSSFLNVYSILKSELLQDPAFEFSTDSRQWVERMLDYNVPGGKLNRGLSVIDSYKLLKDGQELNDEEIFLASALGWCIEWLQAYFLVLDDIMDNSHTRRGHPCWFRVPKVGMIAPNDGVVLRNHIPRILKKHFRGKPYYVDLLDLFNEVEFQTASGQMIDLITTLEGEKDLSKYTLSLHRRIVQYKTAYYSFYLPVACALLMVGENLDNHTDVKNI 220          
BLAST of CK939871 vs. ExPASy Swiss-Prot
Match: FPPS2_PARAR (Farnesyl pyrophosphate synthetase 2 OS=Parthenium argentatum GN=FPS2 PE=2 SV=1)

HSP 1 Score: 382.874 bits (982), Expect = 9.082e-106
Identity = 179/219 (81.74%), Postives = 203/219 (92.69%), Query Frame = 3
Query:   45 SDLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCTEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDI 701
            +D++S+F++VY  LK EL+NDPAFEFD DSRQW+++MLDYNVPGGKLNRGLSV+DSY+LLK GK LTDDE F +SALGWC EWLQAYFLVLDDIMD SHTRRGQPCWFR+PKVGMIAANDG++LRNH+ RILK HFR KPYYVDL+DLFNEVEFQTASGQMIDLITT+ GEKDLSKYSL +HRRIVQYKTAYYSFYLPVACALLM GE+L+KHVEVK++
Sbjct:    3 TDIRSKFLQVYDTLKSELINDPAFEFDDDSRQWIEKMLDYNVPGGKLNRGLSVIDSYQLLKGGK-LTDDEIFHASALGWCVEWLQAYFLVLDDIMDESHTRRGQPCWFRLPKVGMIAANDGIILRNHVPRILKKHFRGKPYYVDLVDLFNEVEFQTASGQMIDLITTLVGEKDLSKYSLSIHRRIVQYKTAYYSFYLPVACALLMFGEDLEKHVEVKNV 220          
BLAST of CK939871 vs. ExPASy Swiss-Prot
Match: FPPS1_PARAR (Farnesyl pyrophosphate synthetase 1 OS=Parthenium argentatum GN=FPS1 PE=2 SV=1)

HSP 1 Score: 382.874 bits (982), Expect = 9.082e-106
Identity = 182/219 (83.11%), Postives = 203/219 (92.69%), Query Frame = 3
Query:   45 SDLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCTEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDI 701
            SDLKSRF++VY  LK EL+NDPAFEFD DSRQWV++MLDYNVPGGKLNRGLSV+DSY+LLK G ELTD+E FL++ALGWC EWLQAYFLVLDDIMD SHTRRGQPCWFR+PKVGMIAANDG++LRN++ RILK HFR KPYYVDLLDLFNEVEFQTASGQMIDLITT+ GEKDLSKYSL +HRRIVQYKTAYYSFYLPVACALLM GE+L+KH EVK++
Sbjct:    3 SDLKSRFLQVYDTLKSELINDPAFEFDDDSRQWVEKMLDYNVPGGKLNRGLSVIDSYQLLKGG-ELTDNEIFLAAALGWCIEWLQAYFLVLDDIMDESHTRRGQPCWFRLPKVGMIAANDGIILRNNVPRILKKHFRGKPYYVDLLDLFNEVEFQTASGQMIDLITTLVGEKDLSKYSLSIHRRIVQYKTAYYSFYLPVACALLMFGEDLEKHEEVKNV 220          
BLAST of CK939871 vs. ExPASy Swiss-Prot
Match: FPPS2_ARATH (Farnesyl pyrophosphate synthetase 2 OS=Arabidopsis thaliana GN=FPS2 PE=2 SV=1)

HSP 1 Score: 372.474 bits (955), Expect = 1.228e-102
Identity = 175/220 (79.55%), Postives = 197/220 (89.55%), Query Frame = 3
Query:   42 MSDLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCTEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDI 701
            M+DLKS F++VY VLK +LL DP+FEF H+SRQW++RMLDYNV GGKLNRGLSVVDSY+LLK+G++LT+ E FLS ALGWC EWLQAYFLVLDDIMD S TRRGQPCWFR PKVGMIA NDG+LLRNHI RILK HFR+ PYYVDL+DLFNEVEFQTA GQMIDLITT +GEKDLSKYSL +HRRIV+YKTAYYSFYLPVACALLMAGENL+ H +VK +
Sbjct:    1 MADLKSTFLDVYSVLKSDLLQDPSFEFTHESRQWLERMLDYNVRGGKLNRGLSVVDSYKLLKQGQDLTEKETFLSCALGWCIEWLQAYFLVLDDIMDNSVTRRGQPCWFRKPKVGMIAINDGILLRNHIHRILKKHFREMPYYVDLVDLFNEVEFQTACGQMIDLITTFDGEKDLSKYSLQIHRRIVEYKTAYYSFYLPVACALLMAGENLENHTDVKTV 220          
BLAST of CK939871 vs. ExPASy Swiss-Prot
Match: FPPS1_ARATH (Farnesyl pyrophosphate synthetase 1, mitochondrial OS=Arabidopsis thaliana GN=FPS1 PE=2 SV=2)

HSP 1 Score: 371.318 bits (952), Expect = 2.735e-102
Identity = 174/219 (79.45%), Postives = 197/219 (89.95%), Query Frame = 3
Query:   45 SDLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCTEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDI 701
            +DLKS F+ VY VLK +LL+DP+FEF ++SR WVDRMLDYNV GGKLNRGLSVVDS++LLK+G +LT+ E FLS ALGWC EWLQAYFLVLDDIMD S TRRGQPCWFRVP+VGM+A NDG+LLRNHI RILK HFRDKPYYVDL+DLFNEVE QTA GQMIDLITT EGEKDL+KYSL +HRRIVQYKTAYYSFYLPVACALLMAGENL+ H++VK++
Sbjct:   44 TDLKSTFLNVYSVLKSDLLHDPSFEFTNESRLWVDRMLDYNVRGGKLNRGLSVVDSFKLLKQGNDLTEQEVFLSCALGWCIEWLQAYFLVLDDIMDNSVTRRGQPCWFRVPQVGMVAINDGILLRNHIHRILKKHFRDKPYYVDLVDLFNEVELQTACGQMIDLITTFEGEKDLAKYSLSIHRRIVQYKTAYYSFYLPVACALLMAGENLENHIDVKNV 262          
BLAST of CK939871 vs. ExPASy Swiss-Prot
Match: FPPS_MAIZE (Farnesyl pyrophosphate synthetase OS=Zea mays GN=FPS PE=2 SV=1)

HSP 1 Score: 342.428 bits (877), Expect = 1.360e-93
Identity = 158/218 (72.48%), Postives = 189/218 (86.70%), Query Frame = 3
Query:   48 DLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCTEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDI 701
            D ++ F  +Y  LK+ELL DPAFEF  +SRQW+DRM+DYNV GGK NRGLSVVDSY+LLK    L ++E FL+  LGWC EWLQA+FLVLDDIMD SHTRRGQPCWFRVP+VG+IAANDG++LRNHISRIL+ HF+ KPYY DLLDLFNEVEF+TASGQ++DLITT EGEKDL+KY++ +H RIVQYKTAYYSFYLPVACALL++GENLD + +V++I
Sbjct:   11 DTRAAFARIYKTLKEELLTDPAFEFTEESRQWIDRMVDYNVLGGKCNRGLSVVDSYKLLKGADALGEEETFLACTLGWCIEWLQAFFLVLDDIMDDSHTRRGQPCWFRVPQVGLIAANDGIILRNHISRILRRHFKGKPYYADLLDLFNEVEFKTASGQLLDLITTHEGEKDLTKYNITVHGRIVQYKTAYYSFYLPVACALLLSGENLDNYGDVENI 228          
BLAST of CK939871 vs. ExPASy Swiss-Prot
Match: CPPAS_TANCI (Chrysanthemyl diphosphate synthase, chloroplastic OS=Tanacetum cinerariifolium PE=1 SV=1)

HSP 1 Score: 342.428 bits (877), Expect = 1.360e-93
Identity = 161/219 (73.52%), Postives = 192/219 (87.67%), Query Frame = 3
Query:   45 SDLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCTEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDI 701
            S+L S+F++VY  LK EL++DP+FEFD DSRQWV+RM+DYNVPGGK+ RG SVVDSY+LLK G+ELT+DE FL+ ALGWCTEWLQA+ LVLDDIMDGSHTRRGQPCWFR+P+VG++A NDGVLLRNH+ RILK +F+ KPYYV LLDLFNE EFQT SGQMID I  + G+KDLSKY++ L+RRIVQYK +YYS YLP+ACALLM GENL+ HV+VKDI
Sbjct:   56 SNLDSQFMQVYETLKSELIHDPSFEFDDDSRQWVERMIDYNVPGGKMVRGYSVVDSYQLLK-GEELTEDEAFLACALGWCTEWLQAFILVLDDIMDGSHTRRGQPCWFRLPEVGVVAINDGVLLRNHVHRILKKYFQGKPYYVHLLDLFNETEFQTISGQMIDTICRLAGQKDLSKYTMTLNRRIVQYKGSYYSCYLPIACALLMFGENLEDHVQVKDI 273          
The following BLAST results are available for this feature:
BLAST of CK939871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
FPPS1_LUPAL2.728e-11085.91Farnesyl pyrophosphate synthetase 1 OS=Lupinus alb... [more]
FPPS_HELAN8.777e-10985.39Farnesyl pyrophosphate synthetase OS=Helianthus an... [more]
FPPS_ARTAN1.267e-10784.47Farnesyl pyrophosphate synthetase OS=Artemisia ann... [more]
FPPS2_LUPAL1.655e-10783.64Farnesyl pyrophosphate synthetase 2 OS=Lupinus alb... [more]
FPPS2_PARAR9.082e-10681.74Farnesyl pyrophosphate synthetase 2 OS=Parthenium ... [more]
FPPS1_PARAR9.082e-10683.11Farnesyl pyrophosphate synthetase 1 OS=Parthenium ... [more]
FPPS2_ARATH1.228e-10279.55Farnesyl pyrophosphate synthetase 2 OS=Arabidopsis... [more]
FPPS1_ARATH2.735e-10279.45Farnesyl pyrophosphate synthetase 1, mitochondrial... [more]
FPPS_MAIZE1.360e-9372.48Farnesyl pyrophosphate synthetase OS=Zea mays GN=F... [more]
CPPAS_TANCI1.360e-9373.52Chrysanthemyl diphosphate synthase, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004744_E10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IVF_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939871 ID=CK939871; Name=CK939871; organism=Citrus sinensis; type=EST; length=702bp
TTTTTTTTTTGGTGGTGGGTCGCAAAAGCGGAAGGTAAAAAATGAGTGAT
CTGAAGTCAAGATTCATTGAGGTGTATGGCGTTTTGAAACAAGAGCTGCT
GAATGATCCTGCATTTGAGTTCGATCACGATTCTCGCCAATGGGTTGATC
GTATGCTGGATTACAATGTACCTGGAGGAAAGCTGAACCGAGGGCTATCT
GTTGTTGACAGCTACAGGTTACTGAAAGAAGGAAAAGAACTAACAGATGA
TGAATTCTTTCTCTCATCTGCACTAGGCTGGTGCACCGAATGGCTTCAAG
CATATTTTCTTGTTCTTGATGATATCATGGATGGCTCTCATACACGCCGT
GGTCAACCTTGCTGGTTCAGAGTCCCCAAGGTTGGTATGATTGCTGCAAA
TGATGGTGTCTTACTACGCAACCATATCTCCAGAATTCTCAAGAATCATT
TTAGAGACAAGCCTTATTACGTGGACCTGTTGGATTTATTTAATGAGGTG
GAATTTCAAACAGCTTCAGGACAAATGATAGACTTAATTACCACAATCGA
AGGAGAGAAAGATCTATCGAAGTACTCATTGCCACTTCATCGTCGCATTG
TTCAGTACAAAACTGCTTACTATTCATTTTACCTTCCAGTTGCTTGTGCA
TTACTTATGGCAGGTGAGAATCTTGACAAACATGTTGAGGTCAAGGACAT
CT
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