CK939868

Overview
NameCK939868
Unique NameCK939868
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10718 contig Csv1_Contig10718:42..886. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939868 vs. ExPASy Swiss-Prot
Match: RPT2_ARATH (Root phototropism protein 2 OS=Arabidopsis thaliana GN=RPT2 PE=1 SV=2)

HSP 1 Score: 357.451 bits (916), Expect = 5.548e-98
Identity = 176/258 (68.22%), Postives = 207/258 (80.23%), Query Frame = 3
Query:   75 PLNKR-FSSAKERTGQWVFSQEIPTDIVVAVGEANFPLHKFMLVAKSNYIRKLIIESKEADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNLVGRTEDFXXXXXXXXXXXXXXXXKSCEALLPLAEDLLIVQRCIDVATAKACYEANFPCRTPPNWWTEELSIIDIEFFSRIIAAMKKRGAKALTIASALITYTERSLRDLVRDHSAGNGTKSSDAQSTNSQVRYQQRELLES 845
            P+N    SS+  RTGQWVFSQ+IPTD+VV VGEANF LHKFMLVAKSNYIRKLI+ESK++D+TRINLS+IPGGPE+FEKAAKFCYGVNFEITV NVAAL CAAEFLQMTDKYC+NNL GRT+DF                KSCE LLP++ DL IV+RC+DV  AKAC EA FPCRTPPNWWTEEL I+D++FFS ++++MK+RG K  ++ASA+ITYTE+SLRDLVRDHS G G K SD     S  R QQR+L++S
Sbjct:    8 PINMNSMSSSLARTGQWVFSQDIPTDVVVEVGEANFSLHKFMLVAKSNYIRKLIMESKDSDVTRINLSDIPGGPEIFEKAAKFCYGVNFEITVQNVAALHCAAEFLQMTDKYCDNNLAGRTQDFLSQVALSSLSGAIVVLKSCEILLPISRDLGIVRRCVDVVGAKACNEAMFPCRTPPNWWTEELCILDVDFFSDVVSSMKQRGVKPSSLASAIITYTEKSLRDLVRDHS-GRGVKYSDPGDNESDERSQQRDLVQS 264          
BLAST of CK939868 vs. ExPASy Swiss-Prot
Match: Y5880_ARATH (BTB/POZ domain-containing protein At5g48800 OS=Arabidopsis thaliana GN=At5g48800 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.172e-45
Identity = 90/236 (38.14%), Postives = 144/236 (61.02%), Query Frame = 3
Query:   96 SAKERTGQWVFSQEIPTDIVVAVGEANFPLHKFMLVAKSNYIRKLIIESKEADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNLVGRTEDFXXXXXXXXXXXXXXXXKSCEALLPLAEDLLIVQRCIDVATAKACYE---ANF------------------PCRTPPNWWTEELSIIDIEFFSRIIAAMKKRGAKALTIASALITYTERSL 740
            S+++   +W+F +++P+DI + V   NF LHKF LV++S  IR+++ E +++D++++ L N+PGG E FE AAKFCYG+NFEIT  NVA L C +++L+MT++Y ++NL  RTE++                K  E LLPLA++L I+ RCID   +KAC E   ++F                        +WW E+LS++ I+ + R++ AMK RG +  +I ++L++Y ER L
Sbjct:   28 SSRQSCSEWIF-RDVPSDITIEVNGGNFALHKFPLVSRSGRIRRIVAEHRDSDISKVELLNLPGGAETFELAAKFCYGINFEITSSNVAQLFCVSDYLEMTEEYSKDNLASRTEEYLESIVCKNLEMCVQVLKQSEILLPLADELNIIGRCIDAIASKACAEQIASSFSRLEYSSSGRLHMSRQVKSSGDGGDWWIEDLSVLRIDLYQRVMNAMKCRGVRPESIGASLVSYAEREL 262          
BLAST of CK939868 vs. ExPASy Swiss-Prot
Match: RPT3_ARATH (Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.217e-38
Identity = 87/258 (33.72%), Postives = 138/258 (53.49%), Query Frame = 3
Query:  108 RTGQWVFSQEIPTDIVVAVGEANFPLHKFMLVAKSNYIRKLIIESKEADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNLVGRTEDFXXXXXXXXXXXXXXXXKSCEALLPLAEDLLIVQRCIDVATAKAC--------------------------------YEANFPCR---------TPPNWWTEELSIIDIEFFSRIIAAMKKRGAKALTIASALITYTERSLRDLVRD 758
            R   W  + +IP+D++V +G+ NF LHK+ L+++S  + +LI ES++ D T + L ++PGGPE FE A+KFCYGV  ++T  N++ LRCAAE+L+MT+   E NL+ +TE F                KSCE L P AE+L IV+RC +    KAC                                 +++F C           PP+WW E++SI+ I+ F R+I A+K +G +   + + ++ Y  + L  L+++
Sbjct:   41 RGQSWFVATDIPSDLLVKIGDMNFHLHKYPLLSRSGKMNRLIYESRDPDPTILILDDLPGGPEAFELASKFCYGVPVDLTATNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSILVLKSCEKLSPWAENLQIVRRCSESIAWKACSNPKGIRWAYTGKAPSPSTTNFAGSSPRWNESKDSSFYCSPSRNTNSQPVPPDWWFEDVSILRIDHFVRVITAIKVKGMRFELLGAVIMHYAGKWLPGLIKE 298          
BLAST of CK939868 vs. ExPASy Swiss-Prot
Match: Y1044_ARATH (BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 2.711e-36
Identity = 98/284 (34.51%), Postives = 141/284 (49.65%), Query Frame = 3
Query:   93 SSAKERTGQ-WVFSQEIPTDIVVAVGEANFPLHKFMLVAKSNYIRKLIIE-SKEAD-LTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNLVGRTEDFXXXXXXXXXXXXXXXXKSCEALLPLAEDLLIVQRCIDVATAKACYEANF-----------------------------PCRTPPNWWTEELSIIDIEFFSRIIAAMKKRGAKALTIASALITYTERSLRDLVRDHSA--GNGTKSSDAQSTNSQVRYQQRELLE 842
            S A +R GQ W  +  +P+DIVV VGE +F LHKF L+++S  + + I E SKE D    I +S++PGG + FE  AKFCYGV  E+T  NV  LRCAAE L+MT+++ E NL+ +TE F                 SC+ +L  A++L I ++CI+    +A  + N                              P  T  +WW E+ S++    F R+I  M+ RG +   IA +L  YT + L  L R       +G  S+   S N     +Q+ LLE
Sbjct:   10 SDAFQRQGQAWFCTTGLPSDIVVEVGEMSFHLHKFPLLSRSGVMERRIAEASKEGDDKCLIEISDLPGGDKTFELVAKFCYGVKLELTASNVVYLRCAAEHLEMTEEHGEGNLISQTETFFNQVVLKSWKDSIKALHSCDEVLEYADELNITKKCIESLAMRASTDPNLFGWPVVEHGGPMQSPGGSVLWNGISTGARPKHTSSDWWYEDASMLSFPLFKRLITVMESRGIREDIIAGSLTYYTRKHLPGLKRRRGGPESSGRFSTPLGSGNVLSEEEQKNLLE 293          
BLAST of CK939868 vs. ExPASy Swiss-Prot
Match: NPH3_ORYSJ (Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.923e-27
Identity = 62/165 (37.58%), Postives = 96/165 (58.18%), Query Frame = 3
Query:  108 RTGQWVFSQEIPTDIVVAVGEANFPLHKFMLVAKSNYIRKLIIESKEAD---------LTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNLVGRTEDFXXXXXXXXXXXXXXXXKSCEALLPLAEDLLIVQRCIDVATAKAC 575
            R   W  + +IP+D++V VG+ NF LHK+ ++++S  + + + ES  AD         +  + + ++PGG   FE AA+F YG+  ++T  N++ LRCAAE+L+MT++  E NL+ +TE F                KSCEAL P AE+L IV+RC +    KAC
Sbjct:   39 RDRSWYVNSDIPSDLLVKVGDVNFYLHKYPMISRSGRMSRAVYESSAADEAEADAAAAVAVVEMGDLPGGAGSFELAARFSYGMAVDLTAANISGLRCAAEYLEMTEEMEEGNLIFKTEAFLSYVVLSSWRDSIAVLKSCEALSPWAENLQIVRRCSESIAWKAC 203          
The following BLAST results are available for this feature:
BLAST of CK939868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RPT2_ARATH5.548e-9868.22Root phototropism protein 2 OS=Arabidopsis thalian... [more]
Y5880_ARATH4.172e-4538.14BTB/POZ domain-containing protein At5g48800 OS=Ara... [more]
RPT3_ARATH2.217e-3833.72Root phototropism protein 3 OS=Arabidopsis thalian... [more]
Y1044_ARATH2.711e-3634.51BTB/POZ domain-containing protein At1g30440 OS=Ara... [more]
NPH3_ORYSJ3.923e-2737.58Coleoptile phototropism protein 1 OS=Oryza sativa ... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004744_E07 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IVF_E07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939868 ID=CK939868; Name=CK939868; organism=Citrus sinensis; type=EST; length=845bp
GGGGATCCGGGGACATATGATCTCTTGATTCTCTCATCATATCAGATTCG
CCAAACCAGACAGCCATGGCTACCCCTCTAAACAAAAGGTTCTCTAGTGC
CAAAGAAAGAACTGGGCAATGGGTTTTTTCTCAGGAAATTCCAACTGATA
TCGTGGTTGCAGTTGGTGAAGCAAATTTCCCTCTTCATAAGTTCATGTTA
GTAGCAAAGAGCAATTACATAAGGAAACTGATAATTGAATCAAAAGAAGC
AGACTTGACAAGAATCAATCTATCTAACATTCCCGGAGGCCCTGAGATGT
TCGAAAAGGCAGCGAAATTCTGTTATGGAGTGAACTTTGAAATCACAGTC
CACAACGTTGCAGCTCTGCGTTGTGCAGCTGAGTTTCTCCAAATGACTGA
CAAGTATTGCGAGAACAACCTAGTTGGTCGCACTGAAGACTTCCTCTCTC
AAGTCGCTTTGTCAAGTCTCTCTGGTGCCGTTGTTGTTCTTAAATCTTGC
GAAGCTCTTCTTCCCCTCGCCGAGGACCTCTTAATTGTTCAACGATGCAT
CGATGTTGCCACTGCTAAGGCTTGTTACGAAGCGAACTTCCCTTGTCGCA
CGCCACCAAACTGGTGGACGGAGGAGCTATCGATCATTGACATTGAATTC
TTCAGCAGAATCATTGCTGCCATGAAAAAACGAGGAGCAAAAGCCCTAAC
CATAGCAAGTGCTTTGATAACATACACAGAGAGATCACTTAGAGATCTTG
TTAGAGACCATTCTGCAGGCAATGGAACTAAGTCTTCGGATGCTCAATCT
ACCAATTCCCAGGTGAGATACCAGCAACGTGAGCTTCTCGAATCC
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