CK939865

Overview
NameCK939865
Unique NameCK939865
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10793 contig Csv1_Contig10793:1..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK939865 vs. ExPASy Swiss-Prot
Match: GLNA_VIGAC (Glutamine synthetase nodule isozyme OS=Vigna aconitifolia PE=2 SV=1)

HSP 1 Score: 320.087 bits (819), Expect = 7.290e-87
Identity = 148/188 (78.72%), Postives = 161/188 (85.64%), Query Frame = 1 
Query:  139 KKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPK*NYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGP 702
            +K+IAEY+WIGGSG+DLRSKARTLP P +DP+KLPK NYDGSST QAPG+DSEVI+YPQ +FKDPFRRGNNILVMCDAYTPAGEPIPTNKR NAAK+F HPDVVAEEPWYGIEQEYTLLQKD+NWPL                   ADKA GRDIV++HYKACLYAGINISGINGEVMPGQWEFQVGP
Sbjct:   17 EKIIAEYIWIGGSGLDLRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVIIYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHNAAKIFSHPDVVAEEPWYGIEQEYTLLQKDVNWPLGWPVGGFPGPQGPYYCGAGADKAFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGP 204
[Close]
BLAST of CK939865 vs. ExPASy Swiss-Prot
Match: GLNA1_MEDSA (Glutamine synthetase cytosolic isozyme OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 1.375e-85
Identity = 148/188 (78.72%), Postives = 159/188 (84.57%), Query Frame = 1 
Query:  139 KKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPK*NYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGP 702
            +K+IAEY+WIGGSG+DLRSKARTLP P TDP++LPK NYDGSST QAPG+DSEVI+YPQ +FKDPFRRGNNILVMCDAYTPAGEPIPTNKR  AAK+F HPDVVAE PWYGIEQEYTLLQKDINWPL                   ADKA GRDIV+SHYKACLYAGINISGINGEVMPGQWEFQVGP
Sbjct:   17 EKIIAEYIWIGGSGLDLRSKARTLPGPVTDPSQLPKWNYDGSSTGQAPGEDSEVIIYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHPDVVAEVPWYGIEQEYTLLQKDINWPLGWPVGGFPGPQGPYYCGAGADKAFGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP 204
[Close]
BLAST of CK939865 vs. ExPASy Swiss-Prot
Match: GLNA2_PHAVU (Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 5.224e-85
Identity = 144/188 (76.60%), Postives = 159/188 (84.57%), Query Frame = 1 
Query:  139 KKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPK*NYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGP 702
            +K+IAEY+W+GGSGMDLRSKARTLP P  DP KLPK NYDGSST+QAPGDDSEVILYPQ +FKDPFRRGNNILV+CD YTPAGEP+PTNKR++AAK+F HPDVVAE PWYGIEQEYTLLQKD+NWPL                   ADKA GRDIV++HYKAC+YAGINISGINGEVMPGQWEFQVGP
Sbjct:   17 EKIIAEYIWVGGSGMDLRSKARTLPGPVDDPAKLPKWNYDGSSTDQAPGDDSEVILYPQAIFKDPFRRGNNILVICDVYTPAGEPLPTNKRYDAAKIFSHPDVVAEVPWYGIEQEYTLLQKDVNWPLGWPLGGYPGPQGPYYCGVGADKAYGRDIVDAHYKACVYAGINISGINGEVMPGQWEFQVGP 204
[Close]
BLAST of CK939865 vs. ExPASy Swiss-Prot
Match: GLNA3_PEA (Glutamine synthetase root isozyme A OS=Pisum sativum GN=GS3A PE=2 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 1.985e-84
Identity = 143/188 (76.06%), Postives = 158/188 (84.04%), Query Frame = 1 
Query:  139 KKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPK*NYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGP 702
            +K+IAEY+W+GGSG+D+RSKARTLP P +DP KLPK NYDGSSTNQAPG DSEVILYPQ +FKDPFRRGNNILV+CD YTPAGEP+PTNKR+NAAK+F HPDV AE PWYGIEQEYTLLQKDINWPL                   ADKA GRDIV++HYKACL+AGINISGINGEVMPGQWEFQVGP
Sbjct:   17 EKIIAEYIWVGGSGIDIRSKARTLPGPVSDPAKLPKWNYDGSSTNQAPGKDSEVILYPQAIFKDPFRRGNNILVICDVYTPAGEPLPTNKRYNAAKIFSHPDVAAEVPWYGIEQEYTLLQKDINWPLGWPIGGYPGKQGPYYCGIGADKAYGRDIVDAHYKACLFAGINISGINGEVMPGQWEFQVGP 204
[Close]
BLAST of CK939865 vs. ExPASy Swiss-Prot
Match: GLNA3_MEDSA (Glutamine synthetase nodule isozyme OS=Medicago sativa GN=GS1 PE=2 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 3.386e-84
Identity = 144/188 (76.60%), Postives = 156/188 (82.98%), Query Frame = 1 
Query:  139 KKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPK*NYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGP 702
            +K+IAEY+W+GGSGMDLRSKARTLP P +DP KLPK NYDGSSTNQAPG DSEVILYPQ +FKDPFR+GNNILV+CD YTPAGEP+PTNKR NAAK+F HPDV AE PWYGIEQEYTLLQKD NWPL                   ADKA GRDIV++HYKACLYAGINISGINGEVMPGQWEFQVGP
Sbjct:   17 EKIIAEYIWVGGSGMDLRSKARTLPGPVSDPAKLPKWNYDGSSTNQAPGQDSEVILYPQAIFKDPFRQGNNILVICDVYTPAGEPLPTNKRHNAAKIFSHPDVAAEVPWYGIEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCGIGADKAYGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGP 204
[Close]
BLAST of CK939865 vs. ExPASy Swiss-Prot
Match: GLNA4_MAIZE (Glutamine synthetase root isozyme 4 OS=Zea mays GN=GLN5 PE=2 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 4.423e-84
Identity = 144/188 (76.60%), Postives = 158/188 (84.04%), Query Frame = 1 
Query:  139 KKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPK*NYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGP 702
            +K+IAEY+WIGGSGMDLRSKARTLP P TDP+KLPK NYDGSST QAPG+DSEVILYPQ +FKDPFRRGNNILVMCD YTPAGEPIPTNKR++AAK+F  P+V AEEPWYGIEQEYTLLQKD NWPL                   A+K+ GRDIV++HYKACLYAGINISGINGEVMPGQWEFQVGP
Sbjct:   17 EKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDCYTPAGEPIPTNKRYSAAKIFSSPEVAAEEPWYGIEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCGIGAEKSFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGP 204
[Close]
BLAST of CK939865 vs. ExPASy Swiss-Prot
Match: GLNA_NICPL (Glutamine synthetase OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 5.776e-84
Identity = 148/188 (78.72%), Postives = 157/188 (83.51%), Query Frame = 1 
Query:  139 KKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPK*NYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGP 702
            +K+IAEY+WIGGSGMDLRSKARTL  P TDP KLPK NYDGSST QAPG+DSEVILYPQ +FKDPFRRGNNILVMCDAYTPAGEPIPTNKR  AAK+F +PDVVAEEPWYGIEQEYTLLQ+DINWPL                   ADKA GRDIV+SHYKA LYAGINISGINGEVMPGQWEFQVGP
Sbjct:   17 EKIIAEYIWIGGSGMDLRSKARTLSGPVTDPAKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSNPDVVAEEPWYGIEQEYTLLQRDINWPLGWPIGGFPGPQGPYYCGTGADKAFGRDIVDSHYKAYLYAGINISGINGEVMPGQWEFQVGP 204
[Close]
BLAST of CK939865 vs. ExPASy Swiss-Prot
Match: GLN13_ARATH (Glutamine synthetase cytosolic isozyme 1-3 OS=Arabidopsis thaliana GN=GLN1-3 PE=1 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 5.776e-84
Identity = 142/187 (75.94%), Postives = 157/187 (83.96%), Query Frame = 1 
Query:  142 KVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPK*NYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGP 702
            K+IAEY+WIGGSGMD+RSKARTLP P TDP+KLPK NYDGSST QA G+DSEVILYPQ +FKDPFR+GNNILVMCDAYTPAG+PIPTNKR NAAK+F HPDV  EEPWYGIEQEYTL+QKD+NWP+                   ADKA+GRDIV++HYKACLYAGI ISGINGEVMPGQWEFQVGP
Sbjct:   18 KIIAEYIWIGGSGMDIRSKARTLPGPVTDPSKLPKWNYDGSSTGQAAGEDSEVILYPQAIFKDPFRKGNNILVMCDAYTPAGDPIPTNKRHNAAKIFSHPDVAKEEPWYGIEQEYTLMQKDVNWPIGWPVGGYPGPQGPYYCGVGADKAIGRDIVDAHYKACLYAGIGISGINGEVMPGQWEFQVGP 204
[Close]
BLAST of CK939865 vs. ExPASy Swiss-Prot
Match: GLN11_ORYSJ (Glutamine synthetase cytosolic isozyme 1-1 OS=Oryza sativa subsp. japonica GN=GLN1-1 PE=1 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 5.776e-84
Identity = 145/188 (77.13%), Postives = 157/188 (83.51%), Query Frame = 1 
Query:  139 KKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPK*NYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGP 702
            +K+IAEY+WIGGSGMDLRSKARTL  P TDP+KLPK NYDGSST QAPG+DSEVILYPQ +FKDPFR+GNNILVMCD YTPAGEPIPTNKR NAAK+F  P+V +EEPWYGIEQEYTLLQKDINWPL                   ADK+ GRDIV+SHYKACLYAGINISGINGEVMPGQWEFQVGP
Sbjct:   17 EKIIAEYIWIGGSGMDLRSKARTLSGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRKGNNILVMCDCYTPAGEPIPTNKRHNAAKIFSSPEVASEEPWYGIEQEYTLLQKDINWPLGWPVGGFPGPQGPYYCGIGADKSFGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP 204
[Close]
BLAST of CK939865 vs. ExPASy Swiss-Prot
Match: GLNA4_PEA (Glutamine synthetase root isozyme B OS=Pisum sativum GN=GS3B PE=3 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 7.544e-84
Identity = 142/188 (75.53%), Postives = 158/188 (84.04%), Query Frame = 1 
Query:  139 KKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPK*NYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGP 702
            +K+IAEY+W+GGSG+D+RSKARTLP P +DP KLPK NYDGSST+QAPG DSEVILYPQ +FKDPFRRGNNILV+CD YTPAGEP+PTNKR+NAAK+F HPDV AE PWYGIEQEYTLLQKDINWPL                   ADKA GRDIV++HYKACL+AGINISGINGEVMPGQWEFQVGP
Sbjct:   17 EKIIAEYIWVGGSGIDIRSKARTLPGPVSDPAKLPKWNYDGSSTDQAPGKDSEVILYPQAIFKDPFRRGNNILVICDVYTPAGEPLPTNKRYNAAKIFSHPDVAAEVPWYGIEQEYTLLQKDINWPLGWPIGGYPGKQGPYYCGIGADKAYGRDIVDAHYKACLFAGINISGINGEVMPGQWEFQVGP 204
The following BLAST results are available for this feature:
BLAST of CK939865 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GLNA_VIGAC7.290e-8778.72Glutamine synthetase nodule isozyme OS=Vigna aconi... [more]
GLNA1_MEDSA1.375e-8578.72Glutamine synthetase cytosolic isozyme OS=Medicago... [more]
GLNA2_PHAVU5.224e-8576.60Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE... [more]
GLNA3_PEA1.985e-8476.06Glutamine synthetase root isozyme A OS=Pisum sativ... [more]
GLNA3_MEDSA3.386e-8476.60Glutamine synthetase nodule isozyme OS=Medicago sa... [more]
GLNA4_MAIZE4.423e-8476.60Glutamine synthetase root isozyme 4 OS=Zea mays GN... [more]
GLNA_NICPL5.776e-8478.72Glutamine synthetase OS=Nicotiana plumbaginifolia ... [more]
GLN13_ARATH5.776e-8475.94Glutamine synthetase cytosolic isozyme 1-3 OS=Arab... [more]
GLN11_ORYSJ5.776e-8477.13Glutamine synthetase cytosolic isozyme 1-1 OS=Oryz... [more]
GLNA4_PEA7.544e-8475.53Glutamine synthetase root isozyme B OS=Pisum sativ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004744_E04 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IVF_E04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939865 ID=CK939865; Name=CK939865; organism=Citrus sinensis; type=EST; length=704bp
GGGGGTCACTCCTCCCACCTTTCTCGCTCATTTTTTATTTTCATTTTCGT
TTTCGTTTCAAAACAAACAAAGCTGCAAGCTGGGCAGCCATGTCTCTTCT
CAACGATCTCCTCAAGCTTAATCTCTCTGAATCCACCGAAGAAAGTCATC
GCCGAATACGTATGGATAGGCGGATCTGGTATGGATTTGAGAAGCAAAGC
CAGAACTTTGCCAGCTCCAACAACGGACCCTACCAAGCTACCGAAATGAA
ATTACGATGGCTCCAGCACTAACCAAGCCCCTGGTGATGACAGTGAAGTT
ATTTTGTACCCGCAAACGGTGTTTAAGGATCCTTTCAGAAGAGGGAACAA
TATCCTGGTAATGTGCGATGCGTACACTCCAGCCGGCGAGCCCATCCCAA
CAAACAAAAGATTCAATGCCGCCAAAGTTTTCGGTCACCCCGATGTTGTC
GCCGAAGAGCCATGGTATGGCATTGAGCAGGAGTACACTCTTCTTCAAAA
AGACATAAACTGGCCCTTGGGGTGGCCAGTTGGCGGCTATCCTGGCCCTC
AGGGACCTTACTACTGCGGTGTTGGCGCTGATAAGGCTTTAGGCCGAGAC
ATTGTGAATTCTCACTACAAAGCTTGCCTTTACGCTGGAATTAACATCAG
TGGCATTAACGGTGAAGTTATGCCGGGTCAGTGGGAATTCCAAGTGGGTC
CCTG
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