EY666043

Overview
NameEY666043
Unique NameEY666043
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length870
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY666043 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 1.261e-76
Identity = 142/197 (72.08%), Postives = 157/197 (79.70%), Query Frame = 2
Query:  140 FVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIPRPEXXXXXXXXXXS*WEPVEGNRIGGKAAR*NE*PIDPSGSFEPLGLVEEPEGF 724
            F GKAV L+PS +E++  G+++MRKTASK+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+   +               VEG R+ G        P+ P GSF+PLGL E+PE F
Sbjct:   13 FAGKAVKLSPSSSEITGNGKVTMRKTASKAKTVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLV-HAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAF 208          
BLAST of EY666043 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.647e-76
Identity = 141/197 (71.57%), Postives = 158/197 (80.20%), Query Frame = 2
Query:  140 FVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIPRPEXXXXXXXXXXS*WEPVEGNRIGGKAAR*NE*PIDPSGSFEPLGLVEEPEGF 724
            F GKAV L+PS +E++  G+++MRKTA+K+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+   +               VEG R+ G+       P+ P GSF+PLGL E+PE F
Sbjct:   12 FAGKAVKLSPSSSEVTGNGKVTMRKTANKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLV-HAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAF 207          
BLAST of EY666043 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.647e-76
Identity = 142/197 (72.08%), Postives = 157/197 (79.70%), Query Frame = 2
Query:  140 FVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIPRPEXXXXXXXXXXS*WEPVEGNRIGGKAAR*NE*PIDPSGSFEPLGLVEEPEGF 724
            F GKAV L+PS +E++  G+++MRKTASK+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+   +               VEG R+ G        P+ P GSF+PLGL E+PE F
Sbjct:   12 FAGKAVKLSPSSSEVTGNGKVTMRKTASKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLV-HAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAF 207          
BLAST of EY666043 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 6.258e-76
Identity = 141/197 (71.57%), Postives = 156/197 (79.19%), Query Frame = 2
Query:  140 FVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIPRPEXXXXXXXXXXS*WEPVEGNRIGGKAAR*NE*PIDPSGSFEPLGLVEEPEGF 724
            F GKAV L+PS +E++  GR++MRKTA+K+   SSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+   +               VEG RI G        P+ P GSF+PLGL ++PE F
Sbjct:   13 FAGKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLV-HAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAF 208          
BLAST of EY666043 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 6.258e-76
Identity = 139/195 (71.28%), Postives = 153/195 (78.46%), Query Frame = 2
Query:  140 FVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIPRPEXXXXXXXXXXS*WEPVEGNRIGGKAAR*NE*PIDPSGSFEPLGLVEEPEGF 724
            F G+AV L+PS  E++  GR+SMRKT +K V+S SPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+   +               VEG R+ G        P+ P GSF+PLGL E+PE F
Sbjct:   13 FAGQAVKLSPSAPEITGNGRVSMRKTVAKPVASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLV-HAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAF 206          
BLAST of EY666043 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 8.174e-76
Identity = 140/195 (71.79%), Postives = 152/195 (77.95%), Query Frame = 2
Query:  140 FVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIPRPEXXXXXXXXXXS*WEPVEGNRIGGKAAR*NE*PIDPSGSFEPLGLVEEPEGF 724
            F G+AV L+PS +E+S  GRI+MRK  +KS  S SPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+   +               VEG RI G        P+ P GSF+PLGL E+PE F
Sbjct:   13 FAGQAVKLSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLV-HAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAF 206          
BLAST of EY666043 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 1.821e-75
Identity = 139/197 (70.56%), Postives = 156/197 (79.19%), Query Frame = 2
Query:  140 FVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIPRPEXXXXXXXXXXS*WEPVEGNRIGGKAAR*NE*PIDPSGSFEPLGLVEEPEGF 724
            F GKAV L+PS +E++  G+++MRKT +K+  +SSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+   +               VEG R+ G        P+ P GSF+PLGL E+PE F
Sbjct:   13 FAGKAVKLSPSSSEITGNGKVTMRKTVTKAKPLSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLV-HAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAF 208          
BLAST of EY666043 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 5.298e-75
Identity = 139/193 (72.02%), Postives = 152/193 (78.76%), Query Frame = 2
Query:  146 GKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIPRPEXXXXXXXXXXS*WEPVEGNRIGGKAAR*NE*PIDPSGSFEPLGLVEEPEGF 724
            G+AV L+P+  E+    + +MRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+   +               VEG RI G        PI P GSF+PLGL ++PE F
Sbjct:    5 GQAVKLSPNAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLV-HAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAF 196          
BLAST of EY666043 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 6.920e-75
Identity = 138/197 (70.05%), Postives = 156/197 (79.19%), Query Frame = 2
Query:  140 FVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIPRPEXXXXXXXXXXS*WEPVEGNRIGGKAAR*NE*PIDPSGSFEPLGLVEEPEGF 724
            F GKAV L+PS +E++  G+++MRKTASK+  VSS SPWYGP+RVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFK G+QIFS+GGLDYLGNPSL+   +               VEG R+ G+       P+ P GSF+PLGL E+PE F
Sbjct:   13 FAGKAVKLSPSSSEITGNGKVTMRKTASKAKPVSSSSPWYGPNRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLV-HAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAF 208          
BLAST of EY666043 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.542e-74
Identity = 142/193 (73.58%), Postives = 151/193 (78.24%), Query Frame = 2
Query:  146 GKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIPRPEXXXXXXXXXXS*WEPVEGNRIGGKAAR*NE*PIDPSGSFEPLGLVEEPEGF 724
            GKAV L PS  E+   GR+SMRKT +K VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLI   +               VEG RI G        PI P GSF+PLGL ++PE F
Sbjct:   16 GKAVKLGPSAPEV---GRVSMRKTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLI-HAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAF 204          
The following BLAST results are available for this feature:
BLAST of EY666043 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CB24_TOBAC1.261e-7672.08Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB25_NICPL1.647e-7671.57Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB21_TOBAC1.647e-7672.08Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB2G_SOLLC6.258e-7671.57Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB22_TOBAC6.258e-7671.28Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB2B_SOLLC8.174e-7671.79Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB25_TOBAC1.821e-7570.56Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB21_CUCSA5.298e-7572.02Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_NICPL6.920e-7570.05Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB23_SOYBN1.542e-7473.58Chlorophyll a-b binding protein 3, chloroplastic O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-102-013-B12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666043 ID=EY666043; Name=EY666043; organism=Citrus sinensis; type=EST; length=870bp
GAACCTGCGGTACGGTCGGATTCCGGGTCGACCCACGCGTCCGGCTTCTC
TTGCTTACACAGCTTCTCTTGCTTACCCAGCTTCTGCTTCTCAATTAAAT
TCCTCAATGGCAACCTCAACAATGGCTCTCTCCTCATCATTCGTCGGCAA
GGCCGTGAACCTCGCCCCTTCAGGCAATGAGCTAAGCAATGGTGGCCGCA
TCTCCATGCGTAAAACCGCGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGG
TACGGCCCAGACAGAGTCAAGTACTTGGGCCCATTCTCTGGCGAGCCCCC
AAGCTACTTGACCGGTGAGTTCCCTGGCGACTACGGTTGGGACACAGCCG
GGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAAGTC
ATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGA
GCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCGTGTGGTTCAAGG
CGGGAGCCCAGATCTTCAGCGAGGGCGGGCTAGACTACTTGGGAAACCCA
AGCTTGATCCCACGCCCAGAGCATCTTGGCCATCTGGGCTTGCCAGGTGG
GTCTTGATGGGAACCCGTTGAGGGTAACAGAATTGGTGGGAAGGCCGCTC
GGTGAAATGAATGACCCATTGACCCAAGTGGCAGCTTTGAACCATTGGGT
TTGGTTGAAGAACCCGAAGGTTTTTGGTGAACTCCAAGGTAAAGGAAATC
AAAAAAGGAAAGGTGGCTAAGTTCCCCCCATGTGTTGGGTTTCTTCTCTT
CAGGCCCATGGCCACCCGCACAGGGAACCGTTAAAAAAAATTTGGCCACA
ACAACTCGGCCCCGAACCCG
back to top