CK939854

Overview
NameCK939854
Unique NameCK939854
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1683 contig Csv1_Contig1683:1..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939854 vs. ExPASy Swiss-Prot
Match: AGL8_SOLTU (Agamous-like MADS-box protein AGL8 homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.565e-63
Identity = 125/184 (67.93%), Postives = 147/184 (79.89%), Query Frame = 3
Query:  150 MGRGRVQLKRIDNKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSELKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISXXXXXXXXXXXXXXXXA*KVKXXEKLLSQEAQ 701
            MGRGRVQLKRI+NKINRQVTFSKRRSGLLKKAHEISVLCDAEV LIVFSTKGKLFEY+ DSCMER+LERYERY +AERQL   +    G+WTLE+++LKAR+EVLQRNQKH++GEDL  L++KELQ++E Q+DS LK IRSRKNQLM +SIS                + KVK  EK ++Q+ Q
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERLLERYERYSFAERQLVPTDHTSPGSWTLEHAKLKARLEVLQRNQKHYVGEDLESLNMKELQNLEHQLDSALKHIRSRKNQLMHESISVLQKQDRALQEQNNQLSKKVKEREKEVAQQNQ 184          
BLAST of CK939854 vs. ExPASy Swiss-Prot
Match: AP1_SINAL (Floral homeotic protein APETALA 1 OS=Sinapis alba GN=AP1 PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 6.317e-62
Identity = 120/184 (65.22%), Postives = 147/184 (79.89%), Query Frame = 3
Query:  150 MGRGRVQLKRIDNKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSELKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISXXXXXXXXXXXXXXXXA*KVKXXEKLLSQEAQ 701
            MGRGRVQLKRI+NKINRQVTFSKRR+GLLKKAHEISVLCDAEVAL+VFS KGKLFEYSTDSCME+ILERYERY YAERQL A E + N NW++EY+ LKA++E+L+RNQ+H++GEDL  +S KELQ++EQQ+D+ LK IRSRKNQLM  SI+                + ++K  EK+L  + +
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERYERYSYAERQLIAPESDVNTNWSMEYNRLKAKIELLERNQRHYLGEDLQAMSSKELQNLEQQLDTALKHIRSRKNQLMHDSINELQRKEKAIQEQNSMLSKQIKEREKILRAQQE 184          
BLAST of CK939854 vs. ExPASy Swiss-Prot
Match: AP1_ARATH (Floral homeotic protein APETALA 1 OS=Arabidopsis thaliana GN=AP1 PE=1 SV=2)

HSP 1 Score: 237.269 bits (604), Expect = 6.317e-62
Identity = 119/184 (64.67%), Postives = 148/184 (80.43%), Query Frame = 3
Query:  150 MGRGRVQLKRIDNKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSELKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISXXXXXXXXXXXXXXXXA*KVKXXEKLLSQEAQ 701
            MGRGRVQLKRI+NKINRQVTFSKRR+GLLKKAHEISVLCDAEVAL+VFS KGKLFEYSTDSCME+ILERYERY YAERQL A E + N NW++EY+ LKA++E+L+RNQ+H++GEDL  +S KELQ++EQQ+D+ LK IR+RKNQLM +SI+                + ++K  EK+L  + +
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERYERYSYAERQLIAPESDVNTNWSMEYNRLKAKIELLERNQRHYLGEDLQAMSPKELQNLEQQLDTALKHIRTRKNQLMYESINELQKKEKAIQEQNSMLSKQIKEREKILRAQQE 184          
BLAST of CK939854 vs. ExPASy Swiss-Prot
Match: AGL8_SOLLC (Agamous-like MADS-box protein AGL8 homolog OS=Solanum lycopersicum GN=TDR4 PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.838e-61
Identity = 124/181 (68.51%), Postives = 141/181 (77.90%), Query Frame = 3
Query:  150 MGRGRVQLKRIDNKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSELKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISXXXXXXXXXXXXXXXXA*KVKXXEKLLSQ 692
            MGRGRVQLKRI+NKINRQVTFSKRRSGLLKKAHEISVLCDAEV LIVFSTKGKLFEY+ DSCMERILERYERY +AE+QL   +     +WTLE+ +LKAR+EVLQRNQKH++GEDL  LS+KELQ++E Q+DS LK IRSRKNQLM +SIS                + KVK  EK   Q
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERILERYERYSFAEKQLVPTDHTSPVSWTLEHRKLKARLEVLQRNQKHYVGEDLESLSMKELQNLEHQLDSALKHIRSRKNQLMHESISVLQKKDRALQEQNNQLSKKVKEREKSAQQ 181          
BLAST of CK939854 vs. ExPASy Swiss-Prot
Match: AGL8_ARATH (Agamous-like MADS-box protein AGL8 OS=Arabidopsis thaliana GN=AGL8 PE=1 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.838e-61
Identity = 119/182 (65.38%), Postives = 144/182 (79.12%), Query Frame = 3
Query:  150 MGRGRVQLKRIDNKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSELKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISXXXXXXXXXXXXXXXXA*KVKXXEKLLSQE 695
            MGRGRVQLKRI+NKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFS+KGKLFEYSTDSCMERILERY+RY Y+++QL   ++  + NW LE+++LKAR+EVL++N+++FMGEDL  LSLKELQS+E Q+D+ +K IRSRKNQ M +SIS                  K+K  EK   Q+
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSSKGKLFEYSTDSCMERILERYDRYLYSDKQLVGRDVSQSENWVLEHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLDAAIKSIRSRKNQAMFESISALQKKDKALQDHNNSLLKKIKEREKKTGQQ 182          
BLAST of CK939854 vs. ExPASy Swiss-Prot
Match: AGL8_SOLCO (Agamous-like MADS-box protein AGL8 homolog OS=Solanum commersonii GN=SCM1 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.032e-60
Identity = 122/184 (66.30%), Postives = 144/184 (78.26%), Query Frame = 3
Query:  150 MGRGRVQLKRIDNKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSELKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISXXXXXXXXXXXXXXXXA*KVKXXEKLLSQEAQ 701
            MGRGRVQLKRI+NKINRQVTFSKRRSGLLKKAHEISVLCDAEV LIVFSTKGKLFEY+TDSCMER+LERYERY +AE+QL   +    G+WTLE ++LKAR+EVLQRN+K ++GEDL  L++KELQ++E Q+ S LK IRSRKNQLM +SIS                + KVK  EK + Q+ Q
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYATDSCMERLLERYERYSFAEKQLVPTDHTSPGSWTLENAKLKARLEVLQRNEKLYVGEDLESLNMKELQNLEHQLASALKHIRSRKNQLMHESISVLQKQDRALQEQNNQLSKKVKEREKEVEQQNQ 184          
BLAST of CK939854 vs. ExPASy Swiss-Prot
Match: AGL8_SINAL (Agamous-like MADS-box protein AGL8 homolog OS=Sinapis alba GN=AGL8 PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.913e-60
Identity = 118/185 (63.78%), Postives = 145/185 (78.38%), Query Frame = 3
Query:  150 MGRGRVQLKRIDNKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSELKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISXXXXXXXXXXXXXXXXA*KVKXXEK-LLSQEAQ 701
            MGRGRVQLKRI+NKINRQVTFSKRRSGLLKKAHEISVLCDAEVAL++FS+KGKLFEYSTDSCME+ILERY+RY Y+++QL   +I  + NW LE+++LKAR+EVL++N+++FMGEDL  LSLKELQS+E Q+ + +K IRSRKNQ M +SIS                  K+K  EK  + QE Q
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALVIFSSKGKLFEYSTDSCMEKILERYDRYLYSDKQLVGRDISQSENWVLEHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLHAAIKSIRSRKNQAMFESISALQKKDKVLQDHNNALLKKIKEREKNTVHQEVQ 185          
BLAST of CK939854 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSJ (MADS-box transcription factor 14 OS=Oryza sativa subsp. japonica GN=MADS14 PE=1 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 7.228e-58
Identity = 110/152 (72.37%), Postives = 134/152 (88.16%), Query Frame = 3
Query:  150 MGRGRVQLKRIDNKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSELKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 605
            MGRG+VQLKRI+NKINRQVTFSKRRSGLLKKA+EISVLCDAEVALI+FSTKGKL+EY+TDSCM++ILERYERY YAE+ L + E +  GNW  EY +LKA++E +Q+ QKH MGEDL  L+LKELQ +EQQ+++ LK IRSRK+QLML+SI+
Sbjct:    1 MGRGKVQLKRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYEYATDSCMDKILERYERYSYAEKVLISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESIN 152          
BLAST of CK939854 vs. ExPASy Swiss-Prot
Match: CAL_ARATH (Transcription factor CAULIFLOWER OS=Arabidopsis thaliana GN=CAL PE=1 SV=3)

HSP 1 Score: 222.631 bits (566), Expect = 1.610e-57
Identity = 113/190 (59.47%), Postives = 149/190 (78.42%), Query Frame = 3
Query:  150 MGRGRVQLKRIDNKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNG--NWTLEYSELKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISXXXXXXXXXXXXXXXXA*KVKXXEKLL-SQEAQCRE 710
            MGRGRV+LKRI+NKINRQVTFSKRR+GLLKKA EISVLCDAEV+LIVFS KGKLFEYS++SCME++LERYERY YAERQL A +   N   NW++EYS LKA++E+L+RNQ+H++GE+L  +SLK+LQ++EQQ+++ LK IRSRKNQLM +S++                  ++K  E +L +++ QC +
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRTGLLKKAQEISVLCDAEVSLIVFSHKGKLFEYSSESCMEKVLERYERYSYAERQLIAPDSHVNAQTNWSMEYSRLKAKIELLERNQRHYLGEELEPMSLKDLQNLEQQLETALKHIRSRKNQLMNESLNHLQRKEKEIQEENSMLTKQIKERENILRTKQTQCEQ 190          
BLAST of CK939854 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSI (MADS-box transcription factor 14 OS=Oryza sativa subsp. indica GN=MADS14 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.044e-56
Identity = 108/152 (71.05%), Postives = 133/152 (87.50%), Query Frame = 3
Query:  150 MGRGRVQLKRIDNKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSELKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 605
            MGRG+VQLKRI+N INRQVTFSKRRSGLLKKA+EISVLCDAEVALI+FSTKGKL++Y+TDSCM++ILERYERY YAE+ L + E +  GNW  EY +LKA++E +Q+ QKH MGEDL  L+LKELQ +EQQ+++ LK IRSRK+QLML+SI+
Sbjct:    1 MGRGKVQLKRIENTINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYKYATDSCMDKILERYERYSYAEKVLISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESIN 152          
The following BLAST results are available for this feature:
BLAST of CK939854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
AGL8_SOLTU2.565e-6367.93Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AP1_SINAL6.317e-6265.22Floral homeotic protein APETALA 1 OS=Sinapis alba ... [more]
AP1_ARATH6.317e-6264.67Floral homeotic protein APETALA 1 OS=Arabidopsis t... [more]
AGL8_SOLLC1.838e-6168.51Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL8_ARATH1.838e-6165.38Agamous-like MADS-box protein AGL8 OS=Arabidopsis ... [more]
AGL8_SOLCO2.032e-6066.30Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL8_SINAL5.913e-6063.78Agamous-like MADS-box protein AGL8 homolog OS=Sina... [more]
MAD14_ORYSJ7.228e-5872.37MADS-box transcription factor 14 OS=Oryza sativa s... [more]
CAL_ARATH1.610e-5759.47Transcription factor CAULIFLOWER OS=Arabidopsis th... [more]
MAD14_ORYSI1.044e-5671.05MADS-box transcription factor 14 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004744_G08 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IVF_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939854 ID=CK939854; Name=CK939854; organism=Citrus sinensis; type=EST; length=710bp
GGGGACTACCTGCTCTAATCTCTTTTTCTATAAAAGTACAGAGATTAGAG
AGATACCCAGAAGAAGCCTGCAAGTTTCTTTATAGCTAATTAAGGGTGTT
CTAACTAGAGTGGAGAATTGCTGGTGATAATTATTAATAGATAGTTAATA
TGGGGAGAGGAAGGGTGCAGCTGAAGAGGATAGACAACAAGATCAATAGA
CAAGTGACTTTCTCTAAGAGAAGGTCTGGTTTATTGAAAAAAGCCCATGA
GATCTCTGTGCTTTGTGACGCTGAAGTTGCTTTGATCGTCTTCTCCACTA
AAGGCAAGCTCTTTGAATACTCTACTGATTCATGCATGGAAAGAATCCTT
GAACGATATGAGAGGTATTGTTATGCGGAGAGGCAGCTTCAAGCAAATGA
GATTGAACCAAATGGAAACTGGACATTGGAATATTCCGAGCTTAAAGCTA
GGATGGAGGTTTTACAAAGAAATCAAAAGCATTTCATGGGAGAGGATCTT
GCAGACTTAAGTCTCAAAGAGCTTCAAAGTGTAGAGCAGCAGATTGATTC
TGGTCTTAAACTCATTCGATCAAGAAAGAACCAACTCATGCTTCAATCCA
TTTCAGAGCTTCAGAAAAAGGACAAGTTATTGAAAGAGCAAAACAACTTG
CTTGCATAGAAGGTAAAAGANNNGGAGAAGCTACTGAGCCAAGAGGCGCA
GTGCAGGGAA
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